Wall clock time and date at job start Tue Mar 31 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47047 * 269.99623 * 3 2 1 5 5 H 1.48499 * 109.47200 * 29.99504 * 3 2 1 6 6 H 1.48507 * 109.46930 * 149.99998 * 3 2 1 7 7 C 1.38811 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00152 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00133 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.88481 * 37.42878 * 10 9 7 12 12 C 1.55162 * 111.00614 * 273.54876 * 10 9 7 13 13 C 1.54327 * 102.94028 * 206.38555 * 12 10 9 14 14 N 1.47025 * 107.27046 * 22.19447 * 13 12 10 15 15 C 1.34777 * 125.64375 * 181.02591 * 14 13 12 16 16 O 1.21278 * 119.99854 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 0.02562 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 15 20 20 N 1.46500 * 109.47299 * 179.97438 * 19 18 17 21 21 C 1.34430 * 126.82414 * 124.99303 * 20 19 18 22 22 N 1.30833 * 108.07734 * 179.97438 * 21 20 19 23 23 C 1.33247 * 109.82759 * 0.02562 * 22 21 20 24 24 N 1.30710 * 108.94746 * 359.74681 * 23 22 21 25 25 C 1.47423 * 108.70465 * 1.28114 * 14 13 12 26 26 H 0.97006 * 119.99360 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00008 * 0.02562 * 9 7 2 28 28 H 1.08993 * 110.71824 * 88.02094 * 12 10 9 29 29 H 1.09003 * 110.71518 * 324.74459 * 12 10 9 30 30 H 1.08997 * 109.87929 * 262.77365 * 13 12 10 31 31 H 1.09002 * 110.00836 * 141.68088 * 13 12 10 32 32 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 33 33 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 34 34 H 1.09001 * 109.47194 * 299.99742 * 18 17 15 35 35 H 1.08992 * 109.47399 * 59.99914 * 18 17 15 36 36 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 37 37 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 38 38 H 1.08001 * 125.96153 * 0.02562 * 21 20 19 39 39 H 1.08001 * 125.52747 * 180.02562 * 23 22 21 40 40 H 1.09001 * 110.35984 * 94.48851 * 25 14 13 41 41 H 1.08995 * 110.36572 * 216.80694 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9526 -3.5890 0.6195 12 6 2.4136 -4.0937 -1.4452 13 6 2.5180 -5.6288 -1.3265 14 7 1.7459 -6.0285 -0.1409 15 6 1.6058 -7.2883 0.3172 16 8 0.9419 -7.5025 1.3092 17 6 2.2742 -8.4308 -0.4033 18 6 1.9574 -9.7430 0.3169 19 6 2.6365 -10.9028 -0.4142 20 7 2.3337 -12.1592 0.2757 21 6 1.7859 -13.2624 -0.2629 22 7 1.6793 -14.1640 0.6791 23 6 2.1460 -13.6753 1.8275 24 7 2.5628 -12.4523 1.6300 25 6 1.1451 -4.8239 0.4602 26 1 -0.4849 0.8401 -0.0004 27 1 0.3554 -2.3880 -0.0002 28 1 3.3669 -3.6650 -1.7540 29 1 1.6207 -3.8136 -2.1387 30 1 3.5611 -5.9211 -1.2055 31 1 2.1018 -6.1009 -2.2165 32 1 3.3527 -8.2727 -0.4135 33 1 1.9046 -8.4803 -1.4275 34 1 2.3268 -9.6936 1.3412 35 1 0.8790 -9.9008 0.3267 36 1 2.2675 -10.9524 -1.4387 37 1 3.7150 -10.7447 -0.4237 38 1 1.4867 -13.3835 -1.2936 39 1 2.1791 -14.2054 2.7678 40 1 0.1293 -4.6822 0.0911 41 1 1.1473 -4.9011 1.5474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186842207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:42 Heat of formation + Delta-G solvation = 66.898482 kcal Electronic energy + Delta-G solvation = -22359.187324 eV Core-core repulsion = 18890.373228 eV Total energy + Delta-G solvation = -3468.814096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.33100 -39.94947 -37.53647 -35.80559 -34.20001 -32.53299 -31.52480 -31.46169 -29.62027 -28.46328 -26.98994 -24.12348 -23.19903 -22.55369 -22.28952 -21.37725 -20.15586 -19.11888 -17.72866 -17.37356 -16.89780 -16.56683 -15.98663 -15.46181 -15.34576 -14.86424 -14.57140 -14.27837 -14.02956 -13.65467 -13.28632 -13.13959 -12.93385 -12.60168 -12.57236 -12.14812 -11.99368 -11.89800 -11.66494 -11.24288 -11.18059 -10.90328 -10.73507 -10.37978 -10.32195 -10.11489 -10.10285 -10.01875 -9.84630 -9.73878 -9.01221 -8.49706 -7.10420 -5.87185 -3.18126 1.32930 1.96443 2.67022 2.67771 3.04832 3.37333 3.42986 3.44764 3.99763 4.01440 4.30362 4.46799 4.50100 4.63511 4.74651 4.80700 4.91895 4.97013 5.01722 5.18396 5.24046 5.30181 5.50817 5.53423 5.64642 5.69451 5.90284 5.91146 5.93478 6.07998 6.12751 6.17046 6.30441 6.46469 6.47695 6.54085 6.84586 7.60409 7.64511 7.77063 8.21778 8.30194 9.41755 9.95394 10.30187 11.34946 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.055278 B = 0.002179 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.409673 B =12849.437826 C =13023.588450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.614 5.614 15 C 0.524 3.476 16 O -0.545 6.545 17 C -0.133 4.133 18 C -0.116 4.116 19 C 0.128 3.872 20 N -0.377 5.377 21 C 0.251 3.749 22 N -0.550 5.550 23 C 0.195 3.805 24 N -0.313 5.313 25 C 0.098 3.902 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.218 0.782 39 H 0.216 0.784 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -23.423 -5.631 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.197 4.197 13 C -0.022 4.022 14 N -0.348 5.348 15 C 0.313 3.687 16 O -0.422 6.422 17 C -0.173 4.173 18 C -0.154 4.154 19 C 0.007 3.993 20 N -0.168 5.168 21 C -0.045 4.045 22 N -0.277 5.277 23 C -0.108 4.108 24 N -0.141 5.141 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.540 -23.240 -4.572 24.572 hybrid contribution 0.123 1.083 -0.464 1.185 sum 6.663 -22.157 -5.036 23.679 Atomic orbital electron populations 1.69663 1.05168 1.25936 1.56941 1.24786 0.95552 0.97867 1.02480 0.86160 0.78672 0.83595 0.77539 1.21620 1.21692 1.20667 1.19199 0.91043 0.83756 1.43624 0.90967 1.42261 1.05837 0.99340 1.88130 1.21341 0.94173 0.85647 0.92858 0.91887 1.23424 1.02887 0.91252 1.02139 1.22114 0.95175 0.97678 0.87253 1.48493 1.50813 1.06317 1.29167 1.20120 0.81294 0.82633 0.84688 1.90726 1.41372 1.83732 1.26420 1.21531 1.02388 0.92843 1.00569 1.21585 1.02027 0.90918 1.00917 1.21915 1.02112 0.80045 0.95272 1.50583 1.45761 1.13169 1.07251 1.26089 0.94933 0.82892 1.00628 1.70539 1.25684 1.31844 0.99681 1.26036 0.96250 0.90275 0.98253 1.78096 1.25030 1.17625 0.93323 1.22580 0.97474 0.83568 0.98843 0.93316 0.77927 0.90670 0.90509 0.91847 0.92010 0.88529 0.88670 0.89439 0.90448 0.87843 0.89025 0.76535 0.76730 0.91312 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.50 9.98 -15.06 -0.15 -6.65 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.04 5.28 -51.23 -0.27 -17.31 16 10 C 0.17 3.19 3.70 -65.66 -0.24 2.95 16 11 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 12 C -0.16 -2.36 6.64 -24.89 -0.17 -2.52 16 13 C 0.10 1.17 6.48 -3.06 -0.02 1.15 16 14 N -0.61 -8.72 3.32 -170.38 -0.57 -9.29 16 15 C 0.52 7.29 7.85 -10.98 -0.09 7.20 16 16 O -0.54 -9.92 16.24 5.56 0.09 -9.83 16 17 C -0.13 -1.09 4.89 -27.88 -0.14 -1.22 16 18 C -0.12 -1.01 4.72 -26.73 -0.13 -1.14 16 19 C 0.13 0.72 6.55 -4.04 -0.03 0.70 16 20 N -0.38 -3.22 3.69 -62.63 -0.23 -3.45 16 21 C 0.25 1.88 12.63 -90.65 -1.14 0.73 16 22 N -0.55 -5.54 11.19 -15.83 -0.18 -5.71 16 23 C 0.19 1.91 13.03 -91.81 -1.20 0.71 16 24 N -0.31 -3.49 12.57 29.29 0.37 -3.13 16 25 C 0.10 1.69 6.53 -2.41 -0.02 1.68 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.39 9.86 7.71 -40.82 -0.31 9.54 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.10 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 41 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -35.33 350.15 -9.40 -44.73 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.18 Total: 5.42 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -3.41 Total: 3.21 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.15 Total: -65.45 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.33 -9.40 -44.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186842207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.626 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds