Wall clock time and date at job start Tue Mar 31 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47119 * 273.12049 * 3 2 1 5 5 C 1.34774 * 120.00179 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99630 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00324 * 179.97438 * 5 4 3 8 8 C 1.50701 * 109.47503 * 180.02562 * 7 5 4 9 9 O 1.21277 * 119.99418 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99963 * 180.02562 * 8 7 5 11 11 C 1.47017 * 125.65366 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27266 * 181.02096 * 11 10 8 13 13 C 1.55152 * 102.93978 * 22.19733 * 12 11 10 14 14 H 1.09003 * 111.00579 * 82.57558 * 13 12 11 15 15 N 1.46502 * 111.00147 * 206.37794 * 13 12 11 16 16 C 1.46510 * 119.99701 * 58.55045 * 15 13 12 17 17 C 1.36939 * 120.00500 * 238.54767 * 15 13 12 18 18 H 1.07994 * 119.99504 * 23.29420 * 17 15 13 19 19 C 1.38810 * 120.00009 * 203.30205 * 17 15 13 20 20 N 1.31622 * 119.99963 * 13.96160 * 19 17 15 21 21 Si 1.86799 * 120.00048 * 193.96977 * 19 17 15 22 22 H 1.48502 * 109.46937 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47487 * 119.99607 * 21 19 17 24 24 H 1.48501 * 109.47204 * 239.99918 * 21 19 17 25 25 C 1.47427 * 125.64231 * 179.72006 * 10 8 7 26 26 H 4.40646 * 5.51481 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47263 * 33.12403 * 3 2 1 28 28 H 1.09001 * 109.46791 * 153.12251 * 3 2 1 29 29 H 0.96997 * 119.99701 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.47713 * 300.00842 * 7 5 4 31 31 H 1.09009 * 109.46748 * 60.00793 * 7 5 4 32 32 H 1.09001 * 109.88495 * 300.44904 * 11 10 8 33 33 H 1.09003 * 109.87668 * 61.44748 * 11 10 8 34 34 H 1.09005 * 110.71323 * 140.55645 * 12 11 10 35 35 H 1.09002 * 110.72304 * 263.65285 * 12 11 10 36 36 H 1.09004 * 109.47168 * 95.16460 * 16 15 13 37 37 H 1.08991 * 109.46813 * 215.16550 * 16 15 13 38 38 H 1.09003 * 109.46468 * 335.16296 * 16 15 13 39 39 H 0.97001 * 119.99716 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.36830 * 274.73838 * 25 10 8 41 41 H 1.08995 * 110.36968 * 37.07274 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0743 1.3792 5 6 4.4594 -0.0876 1.6251 6 8 5.2475 -0.0371 0.7046 7 6 4.9618 -0.1642 3.0438 8 6 6.4688 -0.1636 3.0438 9 8 7.0751 -0.1062 1.9951 10 7 7.1427 -0.2269 4.2093 11 6 6.5366 -0.3006 5.5467 12 6 7.6900 -0.3296 6.5715 13 6 8.8698 0.2998 5.7847 14 1 8.8200 1.3884 5.8102 15 7 10.1566 -0.1762 6.2981 16 6 10.4579 -1.6100 6.3040 17 6 11.0780 0.7189 6.7726 18 1 10.7577 1.6891 7.1224 19 6 12.4236 0.3792 6.8037 20 7 12.8527 -0.6712 6.1367 21 14 13.6252 1.4127 7.7923 22 1 12.8965 2.5298 8.4454 23 1 14.2684 0.5671 8.8298 24 1 14.6659 1.9632 6.8872 25 6 8.6098 -0.2401 4.3538 26 1 -1.0500 0.0002 0.0001 27 1 3.0097 -0.8598 -0.5615 28 1 3.0089 0.9175 -0.4646 29 1 2.5041 -0.1151 2.1153 30 1 4.5985 0.6968 3.6050 31 1 4.5985 -1.0807 3.5089 32 1 5.9098 0.5745 5.7184 33 1 5.9381 -1.2076 5.6329 34 1 7.4442 0.2734 7.4457 35 1 7.9206 -1.3540 6.8638 36 1 11.0192 -1.8670 5.4057 37 1 11.0513 -1.8529 7.1853 38 1 9.5269 -2.1766 6.3253 39 1 13.7929 -0.9088 6.1588 40 1 8.9917 -1.2562 4.2541 41 1 9.0699 0.4135 3.6128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189760316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:12 Heat of formation + Delta-G solvation = 23.134095 kcal Electronic energy + Delta-G solvation = -22929.516589 eV Core-core repulsion = 19426.511976 eV Total energy + Delta-G solvation = -3503.004613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.34425 -39.10339 -37.23801 -35.62007 -34.75740 -33.00418 -31.85028 -30.76362 -29.64225 -27.94602 -26.84778 -26.04793 -23.57699 -22.32195 -21.01364 -19.53203 -19.25908 -18.56721 -17.43969 -17.05603 -16.55003 -16.25470 -15.85975 -15.63936 -14.86450 -14.75203 -14.22446 -13.95964 -13.63892 -13.47620 -13.31535 -13.15626 -12.64997 -12.47339 -12.32713 -12.04894 -11.81572 -11.48557 -11.23227 -10.92408 -10.88926 -10.79936 -10.51320 -10.46512 -10.26066 -10.10371 -9.89233 -9.82486 -9.34429 -9.26754 -8.60149 -8.25406 -6.80444 -5.76693 -3.24642 1.96651 2.31759 2.51094 2.91836 2.95905 3.36379 3.43194 3.45617 3.48906 3.83516 4.38992 4.46425 4.68709 4.99730 4.99831 5.05707 5.17861 5.22943 5.29242 5.34214 5.41392 5.48120 5.63215 5.81403 5.89398 6.01542 6.05032 6.31989 6.39755 6.56832 6.65109 6.77680 6.88563 7.04782 7.19272 7.31544 7.69965 7.77889 7.84374 8.05630 8.34631 8.50029 9.17979 9.80541 10.29426 11.27621 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.002594 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.205764 B =10792.657263 C =11006.607066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.206 4.206 3 C 0.231 3.769 4 N -0.737 5.737 5 C 0.514 3.486 6 O -0.486 6.486 7 C -0.159 4.159 8 C 0.523 3.477 9 O -0.502 6.502 10 N -0.618 5.618 11 C 0.103 3.897 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.585 5.585 16 C 0.158 3.842 17 C -0.261 4.261 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.089 3.911 26 H 0.222 0.778 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.402 0.598 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.042 0.958 38 H 0.003 0.997 39 H 0.253 0.747 40 H 0.067 0.933 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.474 -0.369 -3.696 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.206 4.206 3 C 0.108 3.892 4 N -0.393 5.393 5 C 0.299 3.701 6 O -0.357 6.357 7 C -0.202 4.202 8 C 0.308 3.692 9 O -0.375 6.375 10 N -0.354 5.354 11 C -0.020 4.020 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.014 3.986 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.736 3.264 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.035 4.035 26 H 0.238 0.762 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.236 0.764 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.314 -0.372 -5.050 23.858 hybrid contribution 0.029 0.372 0.944 1.015 sum -23.285 0.000 -4.107 23.644 Atomic orbital electron populations 1.25026 0.95943 1.00950 0.97362 1.22975 0.94284 1.00739 1.02651 1.18044 0.82901 1.03779 0.84438 1.45982 1.07194 1.77913 1.08194 1.20107 0.81665 0.77168 0.91208 1.90897 1.54174 1.45246 1.45393 1.21554 0.95955 1.06444 0.96215 1.19472 0.88341 0.78323 0.83056 1.90859 1.69244 1.47580 1.29814 1.48540 1.08664 1.72992 1.05225 1.22026 0.96834 1.00418 0.82764 1.23205 0.95677 1.02980 0.97530 1.21510 0.86235 0.97176 0.88875 0.90372 1.43874 1.13151 1.03033 1.70422 1.20817 0.94363 0.82305 1.01136 1.19244 0.86726 0.97988 1.35089 0.91158 1.25076 0.96996 0.98196 0.99214 1.70084 1.14387 1.28081 1.42085 0.86162 0.81130 0.79552 0.79528 1.20248 1.21579 1.21680 1.23116 0.77675 1.01979 1.00721 0.76164 0.89002 0.88990 0.76444 0.86205 0.86262 0.91979 0.92211 0.90637 0.90520 0.94832 0.93967 0.97882 0.93643 0.91460 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 19.25 29.55 0.57 -0.45 16 2 C -0.21 -1.53 13.46 -37.12 -0.50 -2.03 16 3 C 0.23 1.94 6.15 -6.83 -0.04 1.90 16 4 N -0.74 -6.15 5.54 -63.16 -0.35 -6.50 16 5 C 0.51 6.28 7.82 -10.99 -0.09 6.20 16 6 O -0.49 -8.67 14.18 -18.97 -0.27 -8.94 16 7 C -0.16 -1.61 5.38 -29.04 -0.16 -1.77 16 8 C 0.52 8.48 7.84 -10.99 -0.09 8.39 16 9 O -0.50 -10.83 14.43 -18.96 -0.27 -11.10 16 10 N -0.62 -9.75 3.32 -170.39 -0.57 -10.32 16 11 C 0.10 1.24 6.48 -3.07 -0.02 1.22 16 12 C -0.15 -2.30 6.48 -24.90 -0.16 -2.46 16 13 C 0.17 3.37 3.55 -65.66 -0.23 3.14 16 14 H 0.08 1.55 7.95 -51.93 -0.41 1.13 16 15 N -0.58 -14.11 2.96 -170.89 -0.51 -14.61 16 16 C 0.16 3.76 7.60 59.85 0.46 4.22 16 17 C -0.26 -6.98 9.60 -15.06 -0.14 -7.13 16 18 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 19 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 20 N -0.90 -26.10 10.78 55.49 0.60 -25.50 16 21 Si 0.91 21.57 29.58 -169.99 -5.03 16.55 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.09 1.74 6.47 -2.41 -0.02 1.72 16 26 H 0.22 0.52 7.80 -54.09 -0.42 0.10 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.40 2.14 8.45 -40.82 -0.34 1.80 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.20 6.38 -51.93 -0.33 0.87 16 36 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 37 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 38 H 0.00 0.06 6.33 -51.93 -0.33 -0.27 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.07 1.41 7.06 -51.93 -0.37 1.04 16 41 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -36.02 347.18 -7.57 -43.59 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.89 Total: -1.36 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -0.51 Total: 12.97 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.82 Total: -56.94 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.54 Total: -20.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.02 -7.57 -43.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189760316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.723 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds