Wall clock time and date at job start Tue Mar 31 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47119 * 273.12049 * 3 2 1 5 5 C 1.34774 * 120.00179 * 179.97438 * 4 3 2 6 6 O 1.21288 * 119.99630 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00324 * 179.97438 * 5 4 3 8 8 C 1.50701 * 109.47503 * 180.02562 * 7 5 4 9 9 O 1.21277 * 119.99418 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99963 * 180.02562 * 8 7 5 11 11 C 1.47017 * 125.65366 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27266 * 181.02096 * 11 10 8 13 13 C 1.55152 * 102.93978 * 22.19733 * 12 11 10 14 14 H 1.09003 * 111.00579 * 82.57558 * 13 12 11 15 15 N 1.46502 * 111.00147 * 206.37794 * 13 12 11 16 16 C 1.46510 * 119.99701 * 58.55045 * 15 13 12 17 17 C 1.36939 * 120.00500 * 238.54767 * 15 13 12 18 18 H 1.07994 * 119.99504 * 23.29420 * 17 15 13 19 19 C 1.38810 * 120.00009 * 203.30205 * 17 15 13 20 20 N 1.31622 * 119.99963 * 13.96160 * 19 17 15 21 21 Si 1.86799 * 120.00048 * 193.96977 * 19 17 15 22 22 H 1.48502 * 109.46937 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47487 * 119.99607 * 21 19 17 24 24 H 1.48501 * 109.47204 * 239.99918 * 21 19 17 25 25 C 1.47427 * 125.64231 * 179.72006 * 10 8 7 26 26 H 4.40646 * 5.51481 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47263 * 33.12403 * 3 2 1 28 28 H 1.09001 * 109.46791 * 153.12251 * 3 2 1 29 29 H 0.96997 * 119.99701 * 0.02562 * 4 3 2 30 30 H 1.09001 * 109.47713 * 300.00842 * 7 5 4 31 31 H 1.09009 * 109.46748 * 60.00793 * 7 5 4 32 32 H 1.09001 * 109.88495 * 300.44904 * 11 10 8 33 33 H 1.09003 * 109.87668 * 61.44748 * 11 10 8 34 34 H 1.09005 * 110.71323 * 140.55645 * 12 11 10 35 35 H 1.09002 * 110.72304 * 263.65285 * 12 11 10 36 36 H 1.09004 * 109.47168 * 95.16460 * 16 15 13 37 37 H 1.08991 * 109.46813 * 215.16550 * 16 15 13 38 38 H 1.09003 * 109.46468 * 335.16296 * 16 15 13 39 39 H 0.97001 * 119.99716 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.36830 * 274.73838 * 25 10 8 41 41 H 1.08995 * 110.36968 * 37.07274 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0743 1.3792 5 6 4.4594 -0.0876 1.6251 6 8 5.2475 -0.0371 0.7046 7 6 4.9618 -0.1642 3.0438 8 6 6.4688 -0.1636 3.0438 9 8 7.0751 -0.1062 1.9951 10 7 7.1427 -0.2269 4.2093 11 6 6.5366 -0.3006 5.5467 12 6 7.6900 -0.3296 6.5715 13 6 8.8698 0.2998 5.7847 14 1 8.8200 1.3884 5.8102 15 7 10.1566 -0.1762 6.2981 16 6 10.4579 -1.6100 6.3040 17 6 11.0780 0.7189 6.7726 18 1 10.7577 1.6891 7.1224 19 6 12.4236 0.3792 6.8037 20 7 12.8527 -0.6712 6.1367 21 14 13.6252 1.4127 7.7923 22 1 12.8965 2.5298 8.4454 23 1 14.2684 0.5671 8.8298 24 1 14.6659 1.9632 6.8872 25 6 8.6098 -0.2401 4.3538 26 1 -1.0500 0.0002 0.0001 27 1 3.0097 -0.8598 -0.5615 28 1 3.0089 0.9175 -0.4646 29 1 2.5041 -0.1151 2.1153 30 1 4.5985 0.6968 3.6050 31 1 4.5985 -1.0807 3.5089 32 1 5.9098 0.5745 5.7184 33 1 5.9381 -1.2076 5.6329 34 1 7.4442 0.2734 7.4457 35 1 7.9206 -1.3540 6.8638 36 1 11.0192 -1.8670 5.4057 37 1 11.0513 -1.8529 7.1853 38 1 9.5269 -2.1766 6.3253 39 1 13.7929 -0.9088 6.1588 40 1 8.9917 -1.2562 4.2541 41 1 9.0699 0.4135 3.6128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189760316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:10 Heat of formation + Delta-G solvation = -2.839738 kcal Electronic energy + Delta-G solvation = -22930.642899 eV Core-core repulsion = 19426.511976 eV Total energy + Delta-G solvation = -3504.130923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45137 -40.26557 -38.65933 -36.58761 -36.32693 -33.76873 -33.43882 -31.98655 -30.94367 -29.28371 -28.06826 -27.67755 -25.19853 -23.75399 -21.94713 -20.93307 -20.39181 -19.34338 -18.94042 -18.45875 -17.57821 -17.35893 -16.98707 -16.82666 -16.32731 -15.92834 -15.56319 -15.08910 -14.89865 -14.58715 -14.54699 -14.36309 -14.20721 -14.08217 -13.61273 -13.37278 -13.08642 -12.89601 -12.79884 -12.45574 -12.40112 -12.14538 -12.01575 -11.80958 -11.78069 -11.45132 -11.36243 -11.14520 -10.65433 -10.50601 -10.12150 -9.57670 -8.78598 -7.83960 -5.34241 1.35730 1.46910 1.48041 1.58706 1.60006 1.72258 1.85036 1.96622 2.50365 2.62684 3.27683 3.36976 3.42104 3.60412 3.83443 3.98001 4.15510 4.23506 4.35615 4.39400 4.43931 4.50891 4.51918 4.58955 4.78530 4.81917 4.93706 5.01645 5.06830 5.22187 5.29574 5.32246 5.35996 5.47868 5.65482 5.70938 6.31664 6.50322 6.58665 6.65221 7.12787 7.19309 7.34753 7.84328 8.28401 9.18803 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.002594 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.205764 B =10792.657263 C =11006.607066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.247 4.247 3 C 0.231 3.769 4 N -0.714 5.714 5 C 0.510 3.490 6 O -0.555 6.555 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.568 6.568 10 N -0.616 5.616 11 C 0.105 3.895 12 C -0.140 4.140 13 C 0.164 3.836 14 H 0.073 0.927 15 N -0.602 5.602 16 C 0.177 3.823 17 C -0.264 4.264 18 H 0.077 0.923 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.290 1.290 24 H -0.297 1.297 25 C 0.098 3.902 26 H 0.255 0.745 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.420 0.580 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.071 0.929 36 H -0.003 1.003 37 H 0.017 0.983 38 H 0.038 0.962 39 H 0.248 0.752 40 H 0.045 0.955 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.910 0.163 -1.526 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.248 4.248 3 C 0.108 3.892 4 N -0.370 5.370 5 C 0.296 3.704 6 O -0.431 6.431 7 C -0.183 4.183 8 C 0.301 3.699 9 O -0.446 6.446 10 N -0.351 5.351 11 C -0.017 4.017 12 C -0.180 4.180 13 C 0.055 3.945 14 H 0.091 0.909 15 N -0.323 5.323 16 C 0.032 3.968 17 C -0.394 4.394 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.217 1.217 24 H -0.225 1.225 25 C -0.028 4.028 26 H 0.271 0.729 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.258 0.742 30 H 0.183 0.817 31 H 0.183 0.817 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.015 0.985 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -27.880 0.174 -2.815 28.022 hybrid contribution 1.261 0.225 0.215 1.299 sum -26.618 0.400 -2.600 26.748 Atomic orbital electron populations 1.25848 0.96614 0.98634 0.95068 1.22885 0.94268 1.02837 1.04772 1.17896 0.84095 1.02905 0.84284 1.45773 1.06336 1.75935 1.08943 1.20567 0.82171 0.76099 0.91581 1.90891 1.56073 1.48649 1.47441 1.21586 0.90559 1.10624 0.95503 1.20591 0.90892 0.76557 0.81850 1.90846 1.71131 1.50367 1.32262 1.48596 1.06766 1.72589 1.07163 1.22335 0.95906 1.04412 0.79032 1.23065 0.94105 1.02346 0.98467 1.21698 0.86025 0.97281 0.89477 0.90859 1.44080 1.14418 1.02766 1.71022 1.20494 0.95112 0.83026 0.98177 1.19630 0.87375 0.98386 1.34023 0.90545 1.25885 0.98854 0.99663 1.00710 1.70264 1.14212 1.30042 1.44028 0.85141 0.78717 0.78360 0.77833 1.18544 1.21673 1.22488 1.22652 0.80781 0.99649 0.99707 0.72884 0.90070 0.90066 0.74217 0.81659 0.81712 0.87854 0.88197 0.88499 0.91076 0.98499 0.96394 0.94338 0.94310 0.93645 0.94867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 19.25 74.32 1.43 0.22 16 2 C -0.25 -3.22 13.46 31.13 0.42 -2.80 16 3 C 0.23 3.78 6.15 84.57 0.52 4.30 16 4 N -0.71 -10.39 5.54 -472.12 -2.61 -13.00 16 5 C 0.51 11.70 7.82 87.66 0.69 12.39 16 6 O -0.55 -20.45 14.18 20.39 0.29 -20.16 16 7 C -0.14 -2.28 5.38 29.10 0.16 -2.12 16 8 C 0.51 15.96 7.84 87.66 0.69 16.65 16 9 O -0.57 -25.55 14.43 20.42 0.29 -25.26 16 10 N -0.62 -18.21 3.32 -811.38 -2.70 -20.90 16 11 C 0.10 1.95 6.48 86.73 0.56 2.51 16 12 C -0.14 -3.68 6.48 31.78 0.21 -3.48 16 13 C 0.16 6.31 3.55 46.46 0.17 6.48 16 14 H 0.07 2.86 7.95 -2.39 -0.02 2.84 16 15 N -0.60 -29.44 2.96 -694.58 -2.05 -31.49 16 16 C 0.18 8.64 7.60 127.77 0.97 9.61 16 17 C -0.26 -14.29 9.60 84.03 0.81 -13.48 16 18 H 0.08 3.96 7.86 -2.91 -0.02 3.93 16 19 C -0.06 -3.15 5.08 84.86 0.43 -2.72 16 20 N -0.94 -56.58 10.78 21.65 0.23 -56.35 16 21 Si 0.97 45.15 29.58 68.60 2.03 47.18 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 C 0.10 3.92 6.47 86.93 0.56 4.48 16 26 H 0.25 0.04 7.80 -4.42 -0.03 0.01 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.42 2.87 8.45 -92.71 -0.78 2.08 16 30 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.17 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.07 1.98 6.38 -2.39 -0.02 1.96 16 36 H 0.00 -0.19 7.33 -2.39 -0.02 -0.20 16 37 H 0.02 0.92 7.39 -2.39 -0.02 0.91 16 38 H 0.04 1.56 6.33 -2.39 -0.02 1.55 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.05 1.99 7.06 -2.39 -0.02 1.97 16 41 H 0.03 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -87.75 347.18 3.34 -84.41 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 0.25 Total: 3.54 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 7.60 Total: 32.03 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -7.13 Total: -121.75 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: 0.58 Total: -45.42 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -87.75 3.34 -84.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189760316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.574 kcal (2) G-P(sol) polarization free energy of solvation -87.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds