Wall clock time and date at job start Tue Mar 31 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46739 * 151.28591 * 3 2 1 5 5 C 1.34778 * 119.99935 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99885 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00118 * 180.02562 * 5 4 3 8 8 C 1.50698 * 109.46986 * 179.97438 * 7 5 4 9 9 O 1.21280 * 120.00212 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99621 * 180.02562 * 8 7 5 11 11 C 1.47023 * 125.64921 * 359.97377 * 10 8 7 12 12 C 1.54330 * 107.40030 * 178.90587 * 11 10 8 13 13 C 1.55396 * 102.82822 * 337.97271 * 12 11 10 14 14 H 1.08998 * 110.89437 * 277.27507 * 13 12 11 15 15 N 1.46500 * 111.07323 * 153.48816 * 13 12 11 16 16 C 1.46503 * 119.99982 * 307.66851 * 15 13 12 17 17 C 1.36937 * 119.99732 * 127.66183 * 15 13 12 18 18 H 1.07997 * 120.00038 * 23.27026 * 17 15 13 19 19 C 1.38817 * 119.99543 * 203.26418 * 17 15 13 20 20 N 1.31618 * 120.00088 * 13.83186 * 19 17 15 21 21 Si 1.86806 * 119.99667 * 193.82713 * 19 17 15 22 22 H 1.48498 * 109.47137 * 60.00419 * 21 19 17 23 23 H 1.48502 * 109.46795 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47068 * 300.00502 * 21 19 17 25 25 C 1.47425 * 125.64511 * 180.02562 * 10 8 7 26 26 H 4.40640 * 5.51398 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47206 * 31.28868 * 3 2 1 28 28 H 1.08991 * 109.47040 * 271.28700 * 3 2 1 29 29 H 0.97001 * 120.00266 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.46964 * 60.00134 * 7 5 4 31 31 H 1.09000 * 109.47334 * 300.00547 * 7 5 4 32 32 H 1.09006 * 109.88342 * 298.39153 * 11 10 8 33 33 H 1.08989 * 109.88419 * 59.40683 * 11 10 8 34 34 H 1.08999 * 110.71931 * 96.24644 * 12 11 10 35 35 H 1.09005 * 110.71659 * 219.52068 * 12 11 10 36 36 H 1.08999 * 109.46749 * 95.15548 * 16 15 13 37 37 H 1.08999 * 109.46855 * 215.15700 * 16 15 13 38 38 H 1.08997 * 109.47120 * 335.15774 * 16 15 13 39 39 H 0.96999 * 119.99802 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.36519 * 322.92009 * 25 10 8 41 41 H 1.08997 * 110.37298 * 85.25018 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2123 -0.6636 5 6 4.4588 1.4292 -0.7815 6 8 5.2473 0.6211 -0.3386 7 6 4.9605 2.6758 -1.4636 8 6 6.4675 2.6771 -1.4626 9 8 7.0743 1.7561 -0.9582 10 7 7.1408 3.7017 -2.0224 11 6 6.5340 4.8760 -2.6661 12 6 7.6846 5.7921 -3.1336 13 6 8.8669 5.3514 -2.2266 14 1 8.8164 5.8439 -1.2555 15 7 10.1541 5.6091 -2.8767 16 6 10.4032 5.1107 -4.2317 17 6 11.1245 6.3159 -2.2180 18 1 11.1207 6.3617 -1.1390 19 6 12.1130 6.9736 -2.9372 20 7 11.9752 7.1517 -4.2340 21 14 13.6388 7.6059 -2.0645 22 1 14.3531 6.4690 -1.4300 23 1 14.5339 8.2663 -3.0484 24 1 13.2422 8.5855 -1.0212 25 6 8.6078 3.8299 -2.0915 26 1 -1.0502 -0.0002 0.0003 27 1 3.0098 -0.8774 -0.5337 28 1 3.0094 -0.0223 1.0273 29 1 2.5031 1.8588 -1.0175 30 1 4.5964 3.5537 -0.9298 31 1 4.5974 2.6990 -2.4911 32 1 5.9382 4.5623 -3.5234 33 1 5.9046 5.4065 -1.9517 34 1 7.9172 5.6137 -4.1835 35 1 7.4359 6.8399 -2.9652 36 1 10.1788 5.8953 -4.9543 37 1 11.4493 4.8191 -4.3250 38 1 9.7667 4.2470 -4.4239 39 1 12.6658 7.6116 -4.7365 40 1 9.0655 3.4467 -1.1795 41 1 8.9944 3.3006 -2.9624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189760317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:16 Heat of formation + Delta-G solvation = 22.836661 kcal Electronic energy + Delta-G solvation = -22901.876657 eV Core-core repulsion = 19398.859146 eV Total energy + Delta-G solvation = -3503.017511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.37005 -39.12392 -37.25110 -35.63605 -34.76589 -33.01625 -31.85402 -30.77172 -29.65671 -27.97219 -26.86543 -26.03895 -23.59392 -22.29978 -21.03170 -19.54045 -19.27766 -18.58440 -17.46286 -17.06104 -16.55893 -16.27403 -15.88594 -15.65333 -14.89497 -14.71435 -14.23664 -13.97451 -13.64474 -13.49280 -13.32958 -13.22077 -12.64997 -12.49204 -12.39129 -12.05533 -11.80562 -11.34883 -11.23693 -10.94570 -10.89979 -10.78614 -10.50100 -10.49166 -10.27143 -10.12792 -9.89208 -9.86462 -9.36100 -9.30095 -8.59452 -8.29142 -6.80861 -5.77093 -3.24525 1.95427 2.30743 2.49048 2.88062 2.93700 3.38092 3.43449 3.43817 3.47587 3.82390 4.37267 4.46715 4.66704 4.98579 5.01042 5.04991 5.16517 5.21707 5.29283 5.36362 5.40388 5.50809 5.60731 5.77854 5.90895 6.01713 6.03394 6.32662 6.38976 6.55527 6.64856 6.76584 6.87892 7.03868 7.17531 7.32863 7.67871 7.77574 7.80679 8.03413 8.34490 8.46077 9.18144 9.80603 10.29223 11.27378 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044803 B = 0.002562 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.801765 B =10926.507081 C =11173.356657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.207 4.207 3 C 0.231 3.769 4 N -0.737 5.737 5 C 0.515 3.485 6 O -0.487 6.487 7 C -0.159 4.159 8 C 0.524 3.476 9 O -0.503 6.503 10 N -0.617 5.617 11 C 0.101 3.899 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.585 5.585 16 C 0.159 3.841 17 C -0.261 4.261 18 H 0.069 0.931 19 C 0.005 3.995 20 N -0.905 5.905 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.087 3.913 26 H 0.222 0.778 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.402 0.598 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.002 0.998 39 H 0.254 0.746 40 H 0.072 0.928 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.745 -7.386 3.258 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.207 4.207 3 C 0.109 3.891 4 N -0.393 5.393 5 C 0.299 3.701 6 O -0.358 6.358 7 C -0.202 4.202 8 C 0.309 3.691 9 O -0.377 6.377 10 N -0.353 5.353 11 C -0.022 4.022 12 C -0.191 4.191 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.014 3.986 17 C -0.390 4.390 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.736 3.264 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.037 4.037 26 H 0.238 0.762 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.236 0.764 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.638 -8.482 3.763 23.544 hybrid contribution 0.102 0.854 0.035 0.861 sum -21.536 -7.627 3.798 23.161 Atomic orbital electron populations 1.25036 0.95947 0.98145 1.00093 1.22972 0.94281 1.02246 1.01207 1.18041 0.82920 0.88845 0.99332 1.45985 1.07202 1.24166 1.61914 1.20101 0.81673 0.87968 0.80357 1.90891 1.54150 1.45425 1.45337 1.21550 0.95874 0.98603 1.04157 1.19458 0.88382 0.81917 0.79300 1.90853 1.69238 1.33923 1.43666 1.48488 1.08505 1.20814 1.57469 1.22062 0.96981 0.86770 0.96411 1.23245 0.95333 0.98636 1.01894 1.21462 0.85753 0.90819 0.95731 0.90403 1.43801 1.10056 1.61765 1.14881 1.20812 0.98024 0.94025 0.85705 1.19173 1.04089 1.25113 0.90658 0.91300 1.25029 1.00136 0.98304 0.95914 1.70055 1.33869 1.44731 1.06242 0.86309 0.82927 0.78616 0.78516 1.20966 1.21632 1.20875 1.23003 0.78070 1.00600 1.02034 0.76153 0.89006 0.88997 0.76413 0.86156 0.86207 0.92177 0.91944 0.90504 0.90487 0.94773 0.94011 0.97948 0.93614 0.90962 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 19.25 29.55 0.57 -0.44 16 2 C -0.21 -1.51 13.46 -37.12 -0.50 -2.01 16 3 C 0.23 1.90 6.15 -6.83 -0.04 1.85 16 4 N -0.74 -6.02 5.54 -63.16 -0.35 -6.37 16 5 C 0.51 6.15 7.82 -10.98 -0.09 6.07 16 6 O -0.49 -8.50 14.18 -18.96 -0.27 -8.77 16 7 C -0.16 -1.58 5.38 -29.03 -0.16 -1.74 16 8 C 0.52 8.27 7.84 -10.99 -0.09 8.19 16 9 O -0.50 -10.52 14.43 -18.96 -0.27 -10.79 16 10 N -0.62 -9.52 3.33 -170.51 -0.57 -10.09 16 11 C 0.10 1.24 6.48 -3.06 -0.02 1.22 16 12 C -0.15 -2.39 6.53 -24.76 -0.16 -2.55 16 13 C 0.17 3.38 3.53 -65.64 -0.23 3.15 16 14 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 15 N -0.58 -14.13 2.96 -170.87 -0.51 -14.63 16 16 C 0.16 3.77 7.58 59.85 0.45 4.22 16 17 C -0.26 -7.00 9.60 -15.06 -0.14 -7.15 16 18 H 0.07 1.81 7.87 -52.49 -0.41 1.40 16 19 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -25.74 10.77 55.49 0.60 -25.14 16 21 Si 0.91 21.60 29.58 -169.99 -5.03 16.58 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.09 1.62 6.47 -2.52 -0.02 1.61 16 26 H 0.22 0.50 7.80 -54.08 -0.42 0.08 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.40 2.10 8.45 -40.82 -0.34 1.76 16 30 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 8.14 -51.94 -0.42 0.19 16 34 H 0.08 1.30 7.01 -51.93 -0.36 0.94 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 37 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 38 H 0.00 0.04 6.39 -51.93 -0.33 -0.29 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 41 H 0.07 1.32 6.42 -51.93 -0.33 0.98 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -35.51 347.22 -7.57 -43.08 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.90 Total: -1.57 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -0.51 Total: 12.47 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.82 Total: -56.24 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.54 Total: -19.56 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.51 -7.57 -43.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189760317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.916 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds