Wall clock time and date at job start Tue Mar 31 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46739 * 151.28591 * 3 2 1 5 5 C 1.34778 * 119.99935 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99885 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00118 * 180.02562 * 5 4 3 8 8 C 1.50698 * 109.46986 * 179.97438 * 7 5 4 9 9 O 1.21280 * 120.00212 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99621 * 180.02562 * 8 7 5 11 11 C 1.47023 * 125.64921 * 359.97377 * 10 8 7 12 12 C 1.54330 * 107.40030 * 178.90587 * 11 10 8 13 13 C 1.55396 * 102.82822 * 337.97271 * 12 11 10 14 14 H 1.08998 * 110.89437 * 277.27507 * 13 12 11 15 15 N 1.46500 * 111.07323 * 153.48816 * 13 12 11 16 16 C 1.46503 * 119.99982 * 307.66851 * 15 13 12 17 17 C 1.36937 * 119.99732 * 127.66183 * 15 13 12 18 18 H 1.07997 * 120.00038 * 23.27026 * 17 15 13 19 19 C 1.38817 * 119.99543 * 203.26418 * 17 15 13 20 20 N 1.31618 * 120.00088 * 13.83186 * 19 17 15 21 21 Si 1.86806 * 119.99667 * 193.82713 * 19 17 15 22 22 H 1.48498 * 109.47137 * 60.00419 * 21 19 17 23 23 H 1.48502 * 109.46795 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47068 * 300.00502 * 21 19 17 25 25 C 1.47425 * 125.64511 * 180.02562 * 10 8 7 26 26 H 4.40640 * 5.51398 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47206 * 31.28868 * 3 2 1 28 28 H 1.08991 * 109.47040 * 271.28700 * 3 2 1 29 29 H 0.97001 * 120.00266 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.46964 * 60.00134 * 7 5 4 31 31 H 1.09000 * 109.47334 * 300.00547 * 7 5 4 32 32 H 1.09006 * 109.88342 * 298.39153 * 11 10 8 33 33 H 1.08989 * 109.88419 * 59.40683 * 11 10 8 34 34 H 1.08999 * 110.71931 * 96.24644 * 12 11 10 35 35 H 1.09005 * 110.71659 * 219.52068 * 12 11 10 36 36 H 1.08999 * 109.46749 * 95.15548 * 16 15 13 37 37 H 1.08999 * 109.46855 * 215.15700 * 16 15 13 38 38 H 1.08997 * 109.47120 * 335.15774 * 16 15 13 39 39 H 0.96999 * 119.99802 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.36519 * 322.92009 * 25 10 8 41 41 H 1.08997 * 110.37298 * 85.25018 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2123 -0.6636 5 6 4.4588 1.4292 -0.7815 6 8 5.2473 0.6211 -0.3386 7 6 4.9605 2.6758 -1.4636 8 6 6.4675 2.6771 -1.4626 9 8 7.0743 1.7561 -0.9582 10 7 7.1408 3.7017 -2.0224 11 6 6.5340 4.8760 -2.6661 12 6 7.6846 5.7921 -3.1336 13 6 8.8669 5.3514 -2.2266 14 1 8.8164 5.8439 -1.2555 15 7 10.1541 5.6091 -2.8767 16 6 10.4032 5.1107 -4.2317 17 6 11.1245 6.3159 -2.2180 18 1 11.1207 6.3617 -1.1390 19 6 12.1130 6.9736 -2.9372 20 7 11.9752 7.1517 -4.2340 21 14 13.6388 7.6059 -2.0645 22 1 14.3531 6.4690 -1.4300 23 1 14.5339 8.2663 -3.0484 24 1 13.2422 8.5855 -1.0212 25 6 8.6078 3.8299 -2.0915 26 1 -1.0502 -0.0002 0.0003 27 1 3.0098 -0.8774 -0.5337 28 1 3.0094 -0.0223 1.0273 29 1 2.5031 1.8588 -1.0175 30 1 4.5964 3.5537 -0.9298 31 1 4.5974 2.6990 -2.4911 32 1 5.9382 4.5623 -3.5234 33 1 5.9046 5.4065 -1.9517 34 1 7.9172 5.6137 -4.1835 35 1 7.4359 6.8399 -2.9652 36 1 10.1788 5.8953 -4.9543 37 1 11.4493 4.8191 -4.3250 38 1 9.7667 4.2470 -4.4239 39 1 12.6658 7.6116 -4.7365 40 1 9.0655 3.4467 -1.1795 41 1 8.9944 3.3006 -2.9624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189760317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:15 Heat of formation + Delta-G solvation = -2.154556 kcal Electronic energy + Delta-G solvation = -22902.960357 eV Core-core repulsion = 19398.859146 eV Total energy + Delta-G solvation = -3504.101211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.44980 -40.26463 -38.65342 -36.58592 -36.32233 -33.76148 -33.42888 -31.98127 -30.96223 -29.29505 -28.05729 -27.67306 -25.18857 -23.75398 -21.94307 -20.93238 -20.39560 -19.34128 -18.94023 -18.46065 -17.57692 -17.35856 -16.98284 -16.81830 -16.29930 -15.92590 -15.57847 -15.09365 -14.91773 -14.59034 -14.54071 -14.37586 -14.20945 -14.12457 -13.61391 -13.39355 -12.92168 -12.88918 -12.79121 -12.46673 -12.39807 -12.13984 -12.09832 -11.83671 -11.78317 -11.44876 -11.39501 -11.14513 -10.64740 -10.49681 -10.11644 -9.58207 -8.77743 -7.83993 -5.32950 1.35886 1.46799 1.49821 1.55776 1.60211 1.72213 1.85123 1.96333 2.50393 2.62894 3.27389 3.37115 3.42713 3.59440 3.82886 3.96811 4.14635 4.23659 4.35578 4.39938 4.42091 4.50009 4.51931 4.59054 4.75707 4.82823 4.94237 5.01720 5.05819 5.24415 5.28431 5.32479 5.33706 5.46926 5.64246 5.70929 6.31827 6.50150 6.58771 6.64129 7.13479 7.18804 7.34304 7.84543 8.28319 9.18439 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044803 B = 0.002562 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.801765 B =10926.507081 C =11173.356657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.247 4.247 3 C 0.231 3.769 4 N -0.715 5.715 5 C 0.511 3.489 6 O -0.553 6.553 7 C -0.143 4.143 8 C 0.515 3.485 9 O -0.565 6.565 10 N -0.615 5.615 11 C 0.107 3.893 12 C -0.142 4.142 13 C 0.165 3.835 14 H 0.072 0.928 15 N -0.602 5.602 16 C 0.177 3.823 17 C -0.269 4.269 18 H 0.068 0.932 19 C -0.047 4.047 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.273 1.273 25 C 0.098 3.902 26 H 0.255 0.745 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.420 0.580 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.015 0.985 37 H 0.009 0.991 38 H 0.028 0.972 39 H 0.249 0.751 40 H 0.045 0.955 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.472 -6.413 3.260 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.247 4.247 3 C 0.109 3.891 4 N -0.371 5.371 5 C 0.297 3.703 6 O -0.429 6.429 7 C -0.185 4.185 8 C 0.304 3.696 9 O -0.443 6.443 10 N -0.351 5.351 11 C -0.015 4.015 12 C -0.181 4.181 13 C 0.056 3.944 14 H 0.091 0.909 15 N -0.324 5.324 16 C 0.033 3.967 17 C -0.399 4.399 18 H 0.086 0.914 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.199 1.199 25 C -0.028 4.028 26 H 0.271 0.729 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.257 0.743 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.476 -7.471 3.760 26.814 hybrid contribution 1.145 0.495 0.076 1.250 sum -24.331 -6.976 3.836 25.600 Atomic orbital electron populations 1.25853 0.96630 0.95917 0.97853 1.22903 0.94297 1.04298 1.03249 1.17901 0.84045 0.88539 0.98662 1.45787 1.06382 1.24292 1.60595 1.20536 0.82157 0.87993 0.79631 1.90883 1.55987 1.47711 1.48352 1.21591 0.90801 0.98991 1.07100 1.20504 0.90784 0.80605 0.77699 1.90841 1.71009 1.36241 1.46175 1.48552 1.06889 1.21999 1.57613 1.22273 0.95722 0.84892 0.98601 1.23089 0.94755 1.00144 1.00159 1.21597 0.85414 0.91307 0.96089 0.90944 1.43962 1.11754 1.61773 1.14887 1.20503 0.96528 0.94172 0.85520 1.19466 1.05038 1.24529 0.90899 0.91416 1.25735 1.02712 0.99234 0.96641 1.70195 1.34413 1.45850 1.07345 0.85356 0.79632 0.78001 0.77524 1.21066 1.21882 1.19858 1.22576 0.80838 0.99414 0.99988 0.72927 0.89999 0.90009 0.74262 0.81809 0.81846 0.88349 0.88001 0.91672 0.89555 0.96648 0.97198 0.95327 0.94142 0.93681 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 19.25 74.32 1.43 0.23 16 2 C -0.25 -3.15 13.46 31.13 0.42 -2.73 16 3 C 0.23 3.67 6.15 84.57 0.52 4.19 16 4 N -0.72 -10.11 5.54 -472.12 -2.61 -12.72 16 5 C 0.51 11.36 7.82 87.66 0.69 12.05 16 6 O -0.55 -19.75 14.18 20.41 0.29 -19.46 16 7 C -0.14 -2.25 5.38 29.10 0.16 -2.09 16 8 C 0.52 15.40 7.84 87.66 0.69 16.08 16 9 O -0.57 -24.18 14.43 20.41 0.29 -23.88 16 10 N -0.62 -17.62 3.33 -811.76 -2.70 -20.32 16 11 C 0.11 2.10 6.48 86.73 0.56 2.67 16 12 C -0.14 -4.12 6.53 31.87 0.21 -3.91 16 13 C 0.16 6.38 3.53 46.47 0.16 6.54 16 14 H 0.07 2.85 7.96 -2.39 -0.02 2.83 16 15 N -0.60 -29.58 2.96 -694.52 -2.05 -31.64 16 16 C 0.18 8.64 7.58 127.77 0.97 9.60 16 17 C -0.27 -14.70 9.60 84.03 0.81 -13.89 16 18 H 0.07 3.62 7.87 -2.91 -0.02 3.60 16 19 C -0.05 -2.64 5.08 84.86 0.43 -2.21 16 20 N -0.93 -54.21 10.77 21.65 0.23 -53.98 16 21 Si 0.97 45.06 29.58 68.60 2.03 47.09 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.10 3.65 6.47 86.86 0.56 4.21 16 26 H 0.25 0.03 7.80 -4.41 -0.03 0.00 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.42 2.81 8.45 -92.71 -0.78 2.03 16 30 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 2.07 7.01 -2.39 -0.02 2.05 16 35 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.02 0.80 7.33 -2.39 -0.02 0.78 16 37 H 0.01 0.50 7.38 -2.39 -0.02 0.49 16 38 H 0.03 1.20 6.39 -2.39 -0.02 1.19 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.04 1.90 8.04 -2.39 -0.02 1.88 16 41 H 0.05 2.07 6.42 -2.39 -0.02 2.05 16 Total: -1.00 -83.95 347.22 3.33 -80.61 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 0.25 Total: 3.56 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: 7.60 Total: 30.73 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -7.14 Total: -118.65 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: 0.58 Total: -43.35 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -83.95 3.33 -80.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189760317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.459 kcal (2) G-P(sol) polarization free energy of solvation -83.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds