Wall clock time and date at job start Tue Mar 31 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99648 * 2 1 4 4 H 1.48505 * 109.46765 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47307 * 299.99781 * 3 2 1 6 6 H 1.48500 * 109.47067 * 59.99916 * 3 2 1 7 7 C 1.38817 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99931 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46986 * 179.97438 * 10 9 7 12 12 C 1.53045 * 109.45941 * 175.00008 * 11 10 9 13 13 C 1.53191 * 109.31398 * 181.38842 * 12 11 10 14 14 N 1.46925 * 108.77409 * 305.36531 * 13 12 11 15 15 C 1.34776 * 120.63070 * 233.58253 * 14 13 12 16 16 O 1.21282 * 120.00017 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00219 * 180.02562 * 15 14 13 18 18 N 1.46501 * 109.47578 * 180.02562 * 17 15 14 19 19 N 1.28593 * 124.62039 * 270.04680 * 18 17 15 20 20 C 1.31382 * 108.71834 * 179.97438 * 19 18 17 21 21 C 1.39675 * 105.89780 * 359.97438 * 20 19 18 22 22 N 1.28602 * 124.61405 * 90.00024 * 18 17 15 23 23 C 1.46928 * 118.73954 * 53.86496 * 14 13 12 24 24 C 1.53035 * 109.46682 * 295.06868 * 11 10 9 25 25 H 0.96997 * 120.00371 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99845 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.46975 * 60.00107 * 10 9 7 28 28 H 1.08995 * 109.47158 * 300.00020 * 10 9 7 29 29 H 1.09000 * 109.45909 * 55.03342 * 11 10 9 30 30 H 1.09000 * 109.49455 * 61.43461 * 12 11 10 31 31 H 1.09005 * 109.52418 * 301.35774 * 12 11 10 32 32 H 1.09003 * 109.58468 * 185.57834 * 13 12 11 33 33 H 1.09004 * 109.70385 * 65.22116 * 13 12 11 34 34 H 1.09002 * 109.46966 * 60.00218 * 17 15 14 35 35 H 1.08999 * 109.47246 * 300.01050 * 17 15 14 36 36 H 1.08005 * 127.04646 * 180.26045 * 20 19 18 37 37 H 1.07994 * 127.04473 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.58749 * 65.91999 * 23 14 13 39 39 H 1.08994 * 109.58720 * 186.35505 * 23 14 13 40 40 H 1.08995 * 109.49604 * 298.57166 * 24 11 10 41 41 H 1.09000 * 109.49386 * 58.62722 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8252 -6.1414 -0.1246 13 6 0.8248 -7.3011 -0.1585 14 7 -0.0408 -7.2136 1.0254 15 6 -0.1824 -8.2686 1.8520 16 8 0.4081 -9.3027 1.6220 17 6 -1.0744 -8.1635 3.0621 18 7 -1.0586 -9.4334 3.7924 19 7 -1.8704 -10.4079 3.5810 20 6 -1.5776 -11.3873 4.4063 21 6 -0.4950 -10.9371 5.1654 22 7 -0.2303 -9.7255 4.7318 23 6 -0.7541 -5.9561 1.2877 24 6 0.2684 -4.8098 1.3084 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 2.6848 -3.7145 0.8906 28 1 2.6848 -3.7145 -0.8894 29 1 0.3800 -4.7131 -0.8408 30 1 2.4913 -6.2603 0.7300 31 1 2.4104 -6.1387 -1.0442 32 1 1.3635 -8.2487 -0.1482 33 1 0.2172 -7.2359 -1.0611 34 1 -2.0928 -7.9394 2.7444 35 1 -0.7130 -7.3665 3.7118 36 1 -2.0698 -12.3459 4.4793 37 1 0.0185 -11.4745 5.9489 38 1 -1.4875 -5.7810 0.5006 39 1 -1.2575 -6.0160 2.2525 40 1 0.9490 -4.9412 2.1495 41 1 -0.2545 -3.8586 1.4088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205392124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:28 Heat of formation + Delta-G solvation = 63.943609 kcal Electronic energy + Delta-G solvation = -23221.714523 eV Core-core repulsion = 19752.772295 eV Total energy + Delta-G solvation = -3468.942229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.48461 -41.36633 -39.02783 -36.61115 -34.96692 -34.41573 -33.38481 -32.52573 -31.91742 -29.59719 -27.98512 -25.57389 -24.38957 -23.81105 -23.73930 -22.63880 -21.48755 -20.27003 -19.23465 -18.75870 -18.39628 -17.16196 -16.88431 -16.70146 -16.43278 -15.82878 -15.65930 -15.48893 -15.33040 -15.21653 -14.88831 -14.61328 -14.07541 -13.98487 -13.66978 -13.37881 -13.13801 -12.93128 -12.78416 -12.56462 -12.23489 -12.12869 -11.96836 -11.79050 -11.69081 -11.62508 -11.34733 -11.33289 -11.26057 -10.92524 -10.24500 -9.80431 -8.97280 -7.95028 -5.22313 0.73716 1.22166 1.30005 1.47778 1.48352 1.57947 1.62912 1.94154 2.56272 3.16154 3.28935 3.38828 3.73689 3.76536 3.86474 3.92042 3.99886 4.07142 4.15842 4.26967 4.34865 4.40039 4.56913 4.58884 4.71302 4.75799 4.81659 4.93866 5.01875 5.06517 5.08154 5.16731 5.25118 5.35721 5.46657 5.51096 5.54412 5.67128 6.17636 6.28570 6.86099 7.35567 7.37194 8.11511 8.36132 9.28368 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032459 B = 0.002754 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.422075 B =10164.927019 C =10534.377292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.115 4.115 13 C 0.116 3.884 14 N -0.597 5.597 15 C 0.504 3.496 16 O -0.577 6.577 17 C 0.118 3.882 18 N -0.158 5.158 19 N -0.312 5.312 20 C -0.024 4.024 21 C -0.025 4.025 22 N -0.316 5.316 23 C 0.106 3.894 24 C -0.122 4.122 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.233 0.767 37 H 0.231 0.769 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 -20.807 7.375 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.103 4.103 12 C -0.154 4.154 13 C -0.006 4.006 14 N -0.330 5.330 15 C 0.290 3.710 16 O -0.457 6.457 17 C -0.005 4.005 18 N -0.058 5.058 19 N -0.153 5.153 20 C -0.207 4.207 21 C -0.208 4.208 22 N -0.156 5.156 23 C -0.016 4.016 24 C -0.160 4.160 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.184 0.816 35 H 0.177 0.823 36 H 0.249 0.751 37 H 0.248 0.752 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.329 -20.013 6.543 21.496 hybrid contribution 0.352 0.425 0.269 0.614 sum -3.976 -19.588 6.812 21.117 Atomic orbital electron populations 1.69786 1.06330 1.25973 1.59532 1.25478 0.96412 1.00773 1.03792 0.85144 0.78160 0.80172 0.76712 1.19458 1.22040 1.21965 1.19623 0.91366 0.85575 1.41066 0.91190 1.42537 1.05728 1.00899 1.89266 1.20812 0.93944 0.85094 0.97177 1.21195 0.97094 0.93511 0.98547 1.21810 0.97588 0.92859 1.03122 1.21636 0.92547 0.99178 0.87215 1.48169 1.46341 1.12850 1.25614 1.20868 0.82267 0.83332 0.84496 1.90736 1.49455 1.30744 1.74725 1.22056 1.04824 0.81381 0.92212 1.47565 1.19929 1.13693 1.24599 1.73997 1.18664 0.98387 1.24219 1.25476 0.99564 1.00735 0.94958 1.25469 0.99490 0.91599 1.04285 1.74029 1.16777 1.19452 1.05359 1.22181 0.94111 0.80923 1.04357 1.21915 0.98248 0.98522 0.97332 0.93960 0.78968 0.96866 0.96599 0.90866 0.92235 0.89517 0.90273 0.89598 0.81561 0.82261 0.75070 0.75235 0.88844 0.86814 0.92049 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.24 -13.36 9.99 84.04 0.84 -12.53 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -35.85 5.32 -343.46 -1.83 -37.68 16 10 C 0.16 5.90 5.65 86.38 0.49 6.39 16 11 C -0.08 -2.35 2.19 -10.77 -0.02 -2.38 16 12 C -0.12 -2.68 5.36 30.67 0.16 -2.52 16 13 C 0.12 2.53 6.43 86.36 0.56 3.09 16 14 N -0.60 -12.42 2.97 -818.07 -2.43 -14.85 16 15 C 0.50 12.14 7.77 87.66 0.68 12.82 16 16 O -0.58 -19.33 15.84 -3.04 -0.05 -19.37 16 17 C 0.12 2.11 5.36 85.63 0.46 2.57 16 18 N -0.16 -3.78 3.44 -190.81 -0.66 -4.44 16 19 N -0.31 -7.43 12.05 -56.86 -0.69 -8.12 16 20 C -0.02 -0.43 12.20 85.11 1.04 0.61 16 21 C -0.03 -0.46 12.20 85.11 1.04 0.58 16 22 N -0.32 -7.79 12.05 -56.87 -0.69 -8.48 16 23 C 0.11 1.80 6.37 86.51 0.55 2.35 16 24 C -0.12 -3.02 5.26 30.82 0.16 -2.86 16 25 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.38 18.94 6.84 -92.71 -0.63 18.31 16 27 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.08 1.95 7.01 -2.39 -0.02 1.93 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.17 1.85 7.93 -2.39 -0.02 1.83 16 35 H 0.16 2.06 7.70 -2.39 -0.02 2.05 16 36 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.21 5.93 -2.39 -0.01 1.19 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.11 7.15 -2.39 -0.02 2.09 16 Total: -1.00 -78.04 339.82 2.81 -75.24 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.41 Total: 22.54 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 6.42 Total: 4.55 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.00 Total: -130.34 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -78.04 2.81 -75.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205392124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.180 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds