Wall clock time and date at job start Tue Mar 31 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00441 * 2 1 4 4 H 1.48503 * 109.47055 * 270.00554 * 3 2 1 5 5 H 1.48502 * 109.46537 * 29.99914 * 3 2 1 6 6 H 1.48495 * 109.47354 * 149.99856 * 3 2 1 7 7 C 1.38814 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00258 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47518 * 179.97438 * 10 9 7 12 12 C 1.53038 * 109.46280 * 175.00004 * 11 10 9 13 13 C 1.53191 * 109.31261 * 181.38700 * 12 11 10 14 14 N 1.46926 * 108.77451 * 305.36750 * 13 12 11 15 15 C 1.34780 * 120.62707 * 233.58792 * 14 13 12 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 N 1.33240 * 125.52504 * 269.69334 * 18 17 15 20 20 C 1.30832 * 109.83048 * 179.85638 * 19 18 17 21 21 N 1.34432 * 108.07417 * 0.40200 * 20 19 18 22 22 H 0.97002 * 126.82470 * 179.79097 * 21 20 19 23 23 N 1.30707 * 125.52568 * 89.99820 * 18 17 15 24 24 C 1.46921 * 118.74177 * 53.86188 * 14 13 12 25 25 C 1.53041 * 109.45914 * 295.07366 * 11 10 9 26 26 H 0.96996 * 120.00297 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00651 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.46603 * 59.99831 * 10 9 7 29 29 H 1.09000 * 109.47092 * 300.00376 * 10 9 7 30 30 H 1.08999 * 109.45604 * 55.02711 * 11 10 9 31 31 H 1.09002 * 109.49670 * 61.43645 * 12 11 10 32 32 H 1.09002 * 109.52529 * 301.35851 * 12 11 10 33 33 H 1.09003 * 109.58572 * 185.57865 * 13 12 11 34 34 H 1.08992 * 109.70469 * 65.22435 * 13 12 11 35 35 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 36 36 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 37 37 H 1.07994 * 125.96850 * 180.19331 * 20 19 18 38 38 H 1.08998 * 109.58542 * 65.92391 * 24 14 13 39 39 H 1.08999 * 109.58977 * 186.35239 * 24 14 13 40 40 H 1.08999 * 109.49703 * 298.55892 * 25 11 10 41 41 H 1.08993 * 109.50252 * 58.62386 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3802 -3.5115 0.1258 13 6 7.8847 -3.2250 0.1603 14 7 8.2422 -2.4313 -1.0233 15 6 9.2270 -2.8361 -1.8497 16 8 9.8278 -3.8641 -1.6193 17 6 9.5823 -2.0106 -3.0595 18 6 10.7065 -2.6772 -3.8098 19 7 12.0060 -2.4617 -3.6093 20 6 12.7100 -3.2031 -4.4256 21 7 11.8573 -3.9139 -5.1839 22 1 12.0887 -4.5481 -5.8804 23 7 10.5647 -3.5563 -4.7666 24 6 7.5099 -1.1848 -1.2856 25 6 6.0059 -1.4971 -1.3070 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3622 0.0004 28 1 3.8490 -3.0423 -0.8903 29 1 3.8483 -3.0427 0.8897 30 1 5.8656 -1.5459 0.8422 31 1 6.1506 -4.1476 -0.7291 32 1 6.0849 -4.0172 1.0451 33 1 8.4361 -4.1652 0.1499 34 1 8.1318 -2.6664 1.0630 35 1 8.7116 -1.9252 -3.7095 36 1 9.8973 -1.0167 -2.7415 37 1 13.7879 -3.2359 -4.4829 38 1 7.7247 -0.4623 -0.4984 39 1 7.8139 -0.7785 -2.2503 40 1 5.7798 -2.1521 -2.1484 41 1 5.4437 -0.5687 -1.4075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206858186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:09 Heat of formation + Delta-G solvation = 62.235839 kcal Electronic energy + Delta-G solvation = -23160.634999 eV Core-core repulsion = 19691.618716 eV Total energy + Delta-G solvation = -3469.016283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.40497 -40.23370 -37.81999 -35.09866 -33.71779 -32.88579 -32.02653 -31.28313 -30.67140 -29.25313 -26.84838 -23.80800 -23.36758 -23.08954 -21.86312 -20.96879 -20.18108 -19.06277 -18.54749 -17.74569 -17.22374 -16.10541 -15.90618 -15.41374 -15.09750 -14.68999 -14.44632 -14.15775 -13.98718 -13.80580 -13.44923 -13.17853 -12.93587 -12.54002 -12.42770 -12.39528 -12.21131 -11.91196 -11.38899 -11.22435 -10.91767 -10.55963 -10.49721 -10.43406 -10.35552 -10.23921 -10.14755 -10.08532 -9.72847 -9.57985 -8.89498 -8.70269 -7.22354 -5.76486 -3.11794 1.30569 2.31707 2.46921 2.51274 3.00548 3.35906 3.37410 3.44375 3.75234 4.29728 4.38904 4.58529 4.58660 4.75374 4.89260 4.96023 5.06111 5.10335 5.18237 5.27069 5.37169 5.48059 5.56654 5.72215 5.73170 5.84973 5.87769 5.91318 6.04078 6.08892 6.13566 6.30048 6.35866 6.49435 6.69942 6.70262 6.81308 7.26901 7.76135 8.00392 8.03680 8.42654 9.21957 9.94104 10.14225 11.42173 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.002966 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.956705 B = 9438.175858 C = 9850.456896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.162 3.838 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.114 3.886 14 N -0.607 5.607 15 C 0.526 3.474 16 O -0.538 6.538 17 C -0.050 4.050 18 C 0.250 3.750 19 N -0.535 5.535 20 C 0.262 3.738 21 N -0.484 5.484 22 H 0.442 0.558 23 N -0.303 5.303 24 C 0.102 3.898 25 C -0.128 4.128 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.223 0.777 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.475 -4.819 -8.139 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.164 4.164 13 C -0.008 4.008 14 N -0.341 5.341 15 C 0.312 3.688 16 O -0.415 6.415 17 C -0.093 4.093 18 C -0.033 4.033 19 N -0.264 5.264 20 C -0.037 4.037 21 N -0.202 5.202 22 H 0.287 0.713 23 N -0.132 5.132 24 C -0.020 4.020 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.239 0.761 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.978 -5.435 -7.996 27.719 hybrid contribution 0.857 0.833 -0.484 1.290 sum 26.836 -4.602 -8.481 28.517 Atomic orbital electron populations 1.69698 1.05130 1.25793 1.57713 1.24684 0.95246 0.97214 1.02173 0.86545 0.79235 0.84999 0.77751 1.21038 1.21776 1.20306 1.19073 0.80723 0.94710 1.42773 0.89302 1.42725 1.03990 1.02239 1.91171 1.20651 0.88002 0.89212 0.98627 1.21361 0.96538 0.96243 0.97567 1.21900 0.93629 0.97874 1.02991 1.21624 0.95929 0.96622 0.86631 1.48084 1.35122 1.24637 1.26279 1.20112 0.79504 0.85649 0.83541 1.90706 1.51845 1.25036 1.73873 1.19959 0.95078 0.99473 0.94745 1.23313 0.92104 0.94268 0.93636 1.70351 1.02981 1.27034 1.25985 1.26063 0.99052 0.89709 0.88905 1.48086 1.04337 1.35928 1.31855 0.71290 1.78006 0.99153 1.18266 1.17745 1.22017 0.92699 0.85341 1.01977 1.22035 0.93659 1.02274 0.98661 0.93080 0.80703 0.95530 0.95525 0.90972 0.91366 0.90436 0.89203 0.91419 0.86244 0.85948 0.76089 0.90815 0.89765 0.91158 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.36 13.97 55.49 0.78 -28.58 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 21.67 27.74 -169.99 -4.71 16.95 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 7 C -0.24 -6.84 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 9 N -0.76 -17.45 5.12 -59.90 -0.31 -17.76 16 10 C 0.16 3.02 5.65 -4.04 -0.02 3.00 16 11 C -0.10 -1.38 2.19 -90.58 -0.20 -1.58 16 12 C -0.13 -1.52 5.36 -26.61 -0.14 -1.67 16 13 C 0.11 1.33 6.43 -3.71 -0.02 1.31 16 14 N -0.61 -7.07 2.97 -172.51 -0.51 -7.58 16 15 C 0.53 6.86 7.69 -10.98 -0.08 6.77 16 16 O -0.54 -9.06 15.45 5.56 0.09 -8.98 16 17 C -0.05 -0.52 4.67 -29.03 -0.14 -0.65 16 18 C 0.25 3.08 6.63 -156.86 -1.04 2.04 16 19 N -0.54 -6.21 11.19 -11.98 -0.13 -6.35 16 20 C 0.26 1.95 13.13 -90.65 -1.19 0.76 16 21 N -0.48 -3.78 7.45 29.53 0.22 -3.56 16 22 H 0.44 1.67 8.96 -182.33 -1.63 0.03 16 23 N -0.30 -3.70 12.80 32.42 0.41 -3.29 16 24 C 0.10 1.02 6.37 -3.49 -0.02 1.00 16 25 C -0.13 -1.63 5.26 -26.38 -0.14 -1.77 16 26 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 27 H 0.36 7.98 4.71 -40.82 -0.19 7.79 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.12 1.01 7.70 -51.93 -0.40 0.61 16 36 H 0.12 0.98 7.93 -51.93 -0.41 0.57 16 37 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -38.40 335.71 -9.44 -47.84 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.08 Total: 4.05 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.25 Total: 2.18 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.46 Total: -67.11 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.40 -9.44 -47.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206858186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.079 kcal (2) G-P(sol) polarization free energy of solvation -38.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds