Wall clock time and date at job start Tue Mar 31 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00441 * 2 1 4 4 H 1.48503 * 109.47055 * 270.00554 * 3 2 1 5 5 H 1.48502 * 109.46537 * 29.99914 * 3 2 1 6 6 H 1.48495 * 109.47354 * 149.99856 * 3 2 1 7 7 C 1.38814 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00258 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99857 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47518 * 179.97438 * 10 9 7 12 12 C 1.53038 * 109.46280 * 175.00004 * 11 10 9 13 13 C 1.53191 * 109.31261 * 181.38700 * 12 11 10 14 14 N 1.46926 * 108.77451 * 305.36750 * 13 12 11 15 15 C 1.34780 * 120.62707 * 233.58792 * 14 13 12 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 N 1.33240 * 125.52504 * 269.69334 * 18 17 15 20 20 C 1.30832 * 109.83048 * 179.85638 * 19 18 17 21 21 N 1.34432 * 108.07417 * 0.40200 * 20 19 18 22 22 H 0.97002 * 126.82470 * 179.79097 * 21 20 19 23 23 N 1.30707 * 125.52568 * 89.99820 * 18 17 15 24 24 C 1.46921 * 118.74177 * 53.86188 * 14 13 12 25 25 C 1.53041 * 109.45914 * 295.07366 * 11 10 9 26 26 H 0.96996 * 120.00297 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00651 * 359.97438 * 9 7 2 28 28 H 1.09006 * 109.46603 * 59.99831 * 10 9 7 29 29 H 1.09000 * 109.47092 * 300.00376 * 10 9 7 30 30 H 1.08999 * 109.45604 * 55.02711 * 11 10 9 31 31 H 1.09002 * 109.49670 * 61.43645 * 12 11 10 32 32 H 1.09002 * 109.52529 * 301.35851 * 12 11 10 33 33 H 1.09003 * 109.58572 * 185.57865 * 13 12 11 34 34 H 1.08992 * 109.70469 * 65.22435 * 13 12 11 35 35 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 36 36 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 37 37 H 1.07994 * 125.96850 * 180.19331 * 20 19 18 38 38 H 1.08998 * 109.58542 * 65.92391 * 24 14 13 39 39 H 1.08999 * 109.58977 * 186.35239 * 24 14 13 40 40 H 1.08999 * 109.49703 * 298.55892 * 25 11 10 41 41 H 1.08993 * 109.50252 * 58.62386 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 6 6.3802 -3.5115 0.1258 13 6 7.8847 -3.2250 0.1603 14 7 8.2422 -2.4313 -1.0233 15 6 9.2270 -2.8361 -1.8497 16 8 9.8278 -3.8641 -1.6193 17 6 9.5823 -2.0106 -3.0595 18 6 10.7065 -2.6772 -3.8098 19 7 12.0060 -2.4617 -3.6093 20 6 12.7100 -3.2031 -4.4256 21 7 11.8573 -3.9139 -5.1839 22 1 12.0887 -4.5481 -5.8804 23 7 10.5647 -3.5563 -4.7666 24 6 7.5099 -1.1848 -1.2856 25 6 6.0059 -1.4971 -1.3070 26 1 -0.4850 0.8400 0.0004 27 1 3.8646 -0.3622 0.0004 28 1 3.8490 -3.0423 -0.8903 29 1 3.8483 -3.0427 0.8897 30 1 5.8656 -1.5459 0.8422 31 1 6.1506 -4.1476 -0.7291 32 1 6.0849 -4.0172 1.0451 33 1 8.4361 -4.1652 0.1499 34 1 8.1318 -2.6664 1.0630 35 1 8.7116 -1.9252 -3.7095 36 1 9.8973 -1.0167 -2.7415 37 1 13.7879 -3.2359 -4.4829 38 1 7.7247 -0.4623 -0.4984 39 1 7.8139 -0.7785 -2.2503 40 1 5.7798 -2.1521 -2.1484 41 1 5.4437 -0.5687 -1.4075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206858186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:08 Heat of formation + Delta-G solvation = 34.410582 kcal Electronic energy + Delta-G solvation = -23161.841593 eV Core-core repulsion = 19691.618716 eV Total energy + Delta-G solvation = -3470.222877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.08375 -41.19763 -38.96108 -36.66240 -34.65169 -34.25689 -32.96623 -32.56801 -31.97237 -30.10475 -28.25685 -25.31285 -24.32898 -23.82712 -23.25460 -22.07087 -21.20904 -20.01379 -19.58517 -19.20370 -18.28453 -17.00557 -16.74343 -16.57845 -16.16545 -15.97925 -15.72841 -15.51883 -15.10988 -14.77328 -14.71569 -14.37352 -14.10767 -13.99321 -13.64194 -13.27873 -13.15454 -13.03284 -12.99275 -12.75615 -12.16674 -12.15098 -11.85827 -11.66462 -11.50626 -11.37066 -11.22953 -11.09193 -10.96343 -10.92249 -10.58292 -9.66237 -9.26845 -8.00271 -5.34146 0.64694 1.40548 1.46027 1.53424 1.55780 1.67114 1.85251 2.18838 2.52080 3.14429 3.31056 3.53008 3.59086 3.67294 3.83390 3.90397 4.08938 4.15756 4.18872 4.36857 4.42096 4.47086 4.52895 4.59294 4.75141 4.82886 4.87000 4.95100 5.06055 5.09871 5.16689 5.23254 5.28392 5.34180 5.52983 5.58563 5.77831 6.23479 6.26279 6.36267 7.08970 7.10003 7.11021 7.86387 8.08033 9.21596 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.002966 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.956705 B = 9438.175858 C = 9850.456896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.049 0.951 9 N -0.754 5.754 10 C 0.159 3.841 11 C -0.088 4.088 12 C -0.116 4.116 13 C 0.117 3.883 14 N -0.605 5.605 15 C 0.523 3.477 16 O -0.583 6.583 17 C -0.048 4.048 18 C 0.233 3.767 19 N -0.574 5.574 20 C 0.275 3.725 21 N -0.476 5.476 22 H 0.457 0.543 23 N -0.344 5.344 24 C 0.106 3.894 25 C -0.128 4.128 26 H 0.258 0.742 27 H 0.369 0.631 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.274 0.726 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.678 -3.254 -8.525 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.260 4.260 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.033 3.967 11 C -0.107 4.107 12 C -0.155 4.155 13 C -0.006 4.006 14 N -0.338 5.338 15 C 0.311 3.689 16 O -0.463 6.463 17 C -0.090 4.090 18 C -0.050 4.050 19 N -0.303 5.303 20 C -0.023 4.023 21 N -0.196 5.196 22 H 0.306 0.694 23 N -0.174 5.174 24 C -0.016 4.016 25 C -0.166 4.166 26 H 0.066 0.934 27 H 0.203 0.797 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.289 0.711 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 29.226 -3.900 -8.403 30.659 hybrid contribution -0.150 0.179 -0.390 0.455 sum 29.076 -3.721 -8.793 30.603 Atomic orbital electron populations 1.69905 1.07419 1.26785 1.59711 1.25613 0.96195 1.01688 1.02485 0.85342 0.78835 0.78833 0.78413 1.19868 1.22614 1.16799 1.19031 0.83006 0.93307 1.41476 0.93249 1.42662 1.02226 1.04220 1.90892 1.20798 0.90945 0.87287 0.97664 1.21256 0.92984 0.97510 0.98905 1.21805 0.93945 0.96731 1.03018 1.21582 0.94867 0.96614 0.87515 1.48167 1.34748 1.25001 1.25836 1.20586 0.79076 0.85206 0.84004 1.90680 1.53554 1.27081 1.75028 1.20068 0.95494 0.99820 0.93638 1.23649 0.92950 0.94526 0.93877 1.70339 1.03098 1.29001 1.27906 1.27033 1.00728 0.87614 0.86940 1.48028 1.03247 1.36106 1.32187 0.69403 1.77887 1.01692 1.19138 1.18689 1.22143 0.90230 0.84764 1.04431 1.22002 0.95776 1.01465 0.97348 0.93365 0.79705 0.96540 0.96214 0.90087 0.92435 0.89619 0.90463 0.89702 0.84605 0.83488 0.71116 0.88935 0.86876 0.91989 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.58 13.97 21.65 0.30 -63.27 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 44.02 27.74 68.60 1.90 45.92 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.24 -9.75 6.52 99.48 0.65 -9.11 16 7 C -0.24 -13.56 10.47 84.03 0.88 -12.68 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 N -0.75 -34.12 5.12 -343.43 -1.76 -35.87 16 10 C 0.16 5.85 5.65 86.38 0.49 6.34 16 11 C -0.09 -2.29 2.19 -10.77 -0.02 -2.32 16 12 C -0.12 -2.66 5.36 30.67 0.16 -2.50 16 13 C 0.12 2.51 6.43 86.36 0.56 3.06 16 14 N -0.60 -12.66 2.97 -818.07 -2.43 -15.09 16 15 C 0.52 12.86 7.69 87.66 0.67 13.54 16 16 O -0.58 -19.47 15.45 -3.03 -0.05 -19.51 16 17 C -0.05 -0.90 4.67 29.10 0.14 -0.76 16 18 C 0.23 5.45 6.63 138.63 0.92 6.37 16 19 N -0.57 -12.35 11.19 -191.81 -2.15 -14.49 16 20 C 0.27 3.42 13.13 180.36 2.37 5.79 16 21 N -0.48 -6.65 7.45 -60.49 -0.45 -7.10 16 22 H 0.46 2.66 8.96 -213.09 -1.91 0.75 16 23 N -0.34 -8.11 12.80 -51.34 -0.66 -8.77 16 24 C 0.11 1.74 6.37 86.51 0.55 2.29 16 25 C -0.13 -2.93 5.26 30.82 0.16 -2.77 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.37 15.37 4.71 -92.71 -0.44 14.93 16 28 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.90 7.01 -2.39 -0.02 1.89 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.14 1.99 7.70 -2.39 -0.02 1.97 16 36 H 0.15 1.90 7.93 -2.39 -0.02 1.88 16 37 H 0.27 -0.03 8.06 -2.91 -0.02 -0.05 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.24 5.93 -2.39 -0.01 1.23 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.87 7.15 -2.39 -0.02 1.85 16 Total: -1.00 -86.47 335.71 0.72 -85.75 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -1.34 Total: 19.66 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 7.34 Total: 12.79 kcal Atomic # 7 Polarization: -137.47 SS G_CDS: -7.14 Total: -144.61 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Total: -86.47 0.72 -85.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206858186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.158 kcal (2) G-P(sol) polarization free energy of solvation -86.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds