Wall clock time and date at job start Tue Mar 31 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00299 * 2 1 4 4 H 1.48504 * 109.47534 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47219 * 299.99676 * 3 2 1 6 6 H 1.48506 * 109.47383 * 59.99894 * 3 2 1 7 7 C 1.38814 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00258 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47518 * 179.97438 * 10 9 7 12 12 C 1.53038 * 109.46280 * 175.00004 * 11 10 9 13 13 C 1.53191 * 109.31261 * 181.38700 * 12 11 10 14 14 N 1.46926 * 108.77451 * 305.36750 * 13 12 11 15 15 C 1.34780 * 120.62707 * 233.58792 * 14 13 12 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.34437 * 126.82221 * 124.70742 * 18 17 15 20 20 N 1.30830 * 108.07519 * 179.89564 * 19 18 17 21 21 C 1.33241 * 109.83101 * 0.38104 * 20 19 18 22 22 N 1.30712 * 108.94654 * 359.76279 * 21 20 19 23 23 C 1.46921 * 118.74177 * 53.86188 * 14 13 12 24 24 C 1.53041 * 109.45914 * 295.07366 * 11 10 9 25 25 H 0.97004 * 119.99676 * 359.97438 * 1 2 3 26 26 H 0.96991 * 120.00225 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46603 * 59.99831 * 10 9 7 28 28 H 1.09000 * 109.47092 * 300.00376 * 10 9 7 29 29 H 1.08999 * 109.45604 * 55.02711 * 11 10 9 30 30 H 1.09002 * 109.49670 * 61.43645 * 12 11 10 31 31 H 1.09002 * 109.52529 * 301.35851 * 12 11 10 32 32 H 1.09003 * 109.58572 * 185.57865 * 13 12 11 33 33 H 1.08992 * 109.70469 * 65.22435 * 13 12 11 34 34 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 36 36 H 1.07999 * 125.95792 * 0.04437 * 19 18 17 37 37 H 1.07999 * 125.52410 * 179.72897 * 21 20 19 38 38 H 1.08998 * 109.58542 * 65.92391 * 23 14 13 39 39 H 1.08999 * 109.58977 * 186.35239 * 23 14 13 40 40 H 1.08999 * 109.49703 * 298.55892 * 24 11 10 41 41 H 1.08993 * 109.50252 * 58.62386 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8198 0.0012 12 6 1.8248 -6.1415 -0.1246 13 6 0.8243 -7.3011 -0.1585 14 7 -0.0414 -7.2135 1.0255 15 6 -0.1829 -8.2685 1.8522 16 8 0.4068 -9.3029 1.6218 17 6 -1.0750 -8.1632 3.0622 18 7 -1.0600 -9.4335 3.7919 19 6 -0.7527 -9.6145 5.0881 20 7 -0.8591 -10.8906 5.3561 21 6 -1.2224 -11.5541 4.2592 22 7 -1.3578 -10.7049 3.2748 23 6 -0.7545 -5.9560 1.2878 24 6 0.2680 -4.8096 1.3085 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.6845 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8894 29 1 0.3796 -4.7131 -0.8407 30 1 2.4908 -6.2605 0.7301 31 1 2.4100 -6.1388 -1.0442 32 1 1.3628 -8.2487 -0.1481 33 1 0.2167 -7.2359 -1.0610 34 1 -0.7133 -7.3663 3.7120 35 1 -2.0933 -7.9391 2.7446 36 1 -0.4700 -8.8411 5.7868 37 1 -1.3790 -12.6207 4.1940 38 1 -1.4880 -5.7809 0.5007 39 1 -1.2580 -6.0158 2.2526 40 1 0.9487 -4.9412 2.1496 41 1 -0.2547 -3.8585 1.4089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206916248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:56 Heat of formation + Delta-G solvation = 71.920362 kcal Electronic energy + Delta-G solvation = -23169.343044 eV Core-core repulsion = 19700.746713 eV Total energy + Delta-G solvation = -3468.596331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.27692 -40.33469 -37.87516 -35.06362 -34.35155 -32.96683 -31.42184 -31.30452 -30.41285 -28.54182 -26.55398 -23.94905 -23.40263 -22.61207 -22.19203 -21.64715 -20.39250 -19.17559 -17.87958 -17.41841 -17.07454 -16.06052 -15.98008 -15.31915 -15.01224 -14.81001 -14.41114 -14.28644 -14.10881 -13.86480 -13.67702 -13.51191 -12.96915 -12.78612 -12.52580 -12.37246 -12.04673 -11.91296 -11.29211 -11.07537 -10.90952 -10.55192 -10.49845 -10.41703 -10.35212 -10.23560 -10.03948 -9.96573 -9.72491 -9.68746 -8.94195 -8.80277 -6.98449 -5.83739 -3.11861 1.39029 1.91515 2.28386 2.73852 2.80476 3.38480 3.44863 3.46561 3.95514 4.09477 4.19998 4.52775 4.55787 4.61312 4.69872 4.90304 4.93500 5.01187 5.05728 5.23152 5.30559 5.46759 5.54273 5.67324 5.82554 5.83869 5.95360 5.98643 6.08200 6.17262 6.20790 6.28769 6.34562 6.48800 6.51689 6.71772 6.82570 7.12418 7.64949 7.83702 7.88655 8.35762 9.47222 10.04442 10.39111 11.39289 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032328 B = 0.002742 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.915575 B =10210.793472 C =10658.222503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.115 3.885 14 N -0.605 5.605 15 C 0.503 3.497 16 O -0.519 6.519 17 C 0.110 3.890 18 N -0.369 5.369 19 C 0.255 3.745 20 N -0.546 5.546 21 C 0.190 3.810 22 N -0.291 5.291 23 C 0.102 3.898 24 C -0.125 4.125 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.220 0.780 37 H 0.216 0.784 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 -17.115 6.659 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.007 4.007 14 N -0.340 5.340 15 C 0.288 3.712 16 O -0.394 6.394 17 C -0.016 4.016 18 N -0.161 5.161 19 C -0.041 4.041 20 N -0.273 5.273 21 C -0.112 4.112 22 N -0.117 5.117 23 C -0.021 4.021 24 C -0.164 4.164 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.137 0.863 36 H 0.236 0.764 37 H 0.232 0.768 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.655 -17.845 6.076 19.202 hybrid contribution 0.211 1.437 0.018 1.453 sum -3.445 -16.408 6.095 17.839 Atomic orbital electron populations 1.69655 1.05089 1.25566 1.58003 1.24726 0.95542 0.97689 1.03055 0.86126 0.78815 0.84100 0.77210 1.20581 1.21855 1.21858 1.19276 0.91077 0.84190 1.42409 0.91205 1.42376 1.05793 0.99989 1.89497 1.20669 0.93148 0.85333 0.97827 1.21309 0.97907 0.94458 0.97649 1.21915 0.97693 0.93961 1.02861 1.21647 0.92421 1.00177 0.86466 1.48143 1.46893 1.12719 1.26227 1.20336 0.82757 0.83877 0.84250 1.90779 1.46873 1.28488 1.73224 1.21686 1.02789 0.82646 0.94455 1.50032 1.50922 1.06661 1.08436 1.26102 0.96585 0.95893 0.85568 1.70528 1.23818 1.03096 1.29835 1.26016 0.98415 1.01105 0.85711 1.78183 1.23221 0.88181 1.22136 1.22055 0.95060 0.83238 1.01698 1.22014 0.97844 0.98097 0.98397 0.93563 0.78297 0.96416 0.96317 0.90858 0.91576 0.90484 0.89243 0.91251 0.84999 0.86255 0.76406 0.76763 0.90488 0.90244 0.91641 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -17.36 5.32 -59.90 -0.32 -17.68 16 10 C 0.16 2.93 5.65 -4.04 -0.02 2.91 16 11 C -0.09 -1.31 2.19 -90.58 -0.20 -1.51 16 12 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 13 C 0.11 1.28 6.43 -3.71 -0.02 1.26 16 14 N -0.61 -6.41 2.97 -172.51 -0.51 -6.92 16 15 C 0.50 5.86 7.74 -10.98 -0.08 5.77 16 16 O -0.52 -8.32 15.15 5.56 0.08 -8.24 16 17 C 0.11 0.87 5.38 -5.19 -0.03 0.84 16 18 N -0.37 -3.89 3.41 -63.81 -0.22 -4.11 16 19 C 0.26 2.32 12.63 -90.65 -1.14 1.17 16 20 N -0.55 -6.23 11.19 -15.83 -0.18 -6.40 16 21 C 0.19 2.15 13.03 -91.81 -1.20 0.95 16 22 N -0.29 -3.81 11.81 29.29 0.35 -3.46 16 23 C 0.10 0.92 6.37 -3.49 -0.02 0.90 16 24 C -0.13 -1.54 5.26 -26.38 -0.14 -1.68 16 25 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.38 9.38 6.84 -40.82 -0.28 9.10 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.10 7.01 -51.93 -0.36 0.74 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.13 0.56 7.65 -51.93 -0.40 0.16 16 35 H 0.12 0.71 7.93 -51.93 -0.41 0.30 16 36 H 0.22 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.22 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.31 7.15 -51.93 -0.37 0.94 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -36.09 339.20 -9.14 -45.23 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.91 Total: 4.18 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.25 Total: 1.92 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.15 Total: -65.00 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.09 -9.14 -45.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206916248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.149 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds