Wall clock time and date at job start Tue Mar 31 2020 03:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00299 * 2 1 4 4 H 1.48504 * 109.47534 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47219 * 299.99676 * 3 2 1 6 6 H 1.48506 * 109.47383 * 59.99894 * 3 2 1 7 7 C 1.38814 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00258 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47518 * 179.97438 * 10 9 7 12 12 C 1.53038 * 109.46280 * 175.00004 * 11 10 9 13 13 C 1.53191 * 109.31261 * 181.38700 * 12 11 10 14 14 N 1.46926 * 108.77451 * 305.36750 * 13 12 11 15 15 C 1.34780 * 120.62707 * 233.58792 * 14 13 12 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.34437 * 126.82221 * 124.70742 * 18 17 15 20 20 N 1.30830 * 108.07519 * 179.89564 * 19 18 17 21 21 C 1.33241 * 109.83101 * 0.38104 * 20 19 18 22 22 N 1.30712 * 108.94654 * 359.76279 * 21 20 19 23 23 C 1.46921 * 118.74177 * 53.86188 * 14 13 12 24 24 C 1.53041 * 109.45914 * 295.07366 * 11 10 9 25 25 H 0.97004 * 119.99676 * 359.97438 * 1 2 3 26 26 H 0.96991 * 120.00225 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46603 * 59.99831 * 10 9 7 28 28 H 1.09000 * 109.47092 * 300.00376 * 10 9 7 29 29 H 1.08999 * 109.45604 * 55.02711 * 11 10 9 30 30 H 1.09002 * 109.49670 * 61.43645 * 12 11 10 31 31 H 1.09002 * 109.52529 * 301.35851 * 12 11 10 32 32 H 1.09003 * 109.58572 * 185.57865 * 13 12 11 33 33 H 1.08992 * 109.70469 * 65.22435 * 13 12 11 34 34 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 36 36 H 1.07999 * 125.95792 * 0.04437 * 19 18 17 37 37 H 1.07999 * 125.52410 * 179.72897 * 21 20 19 38 38 H 1.08998 * 109.58542 * 65.92391 * 23 14 13 39 39 H 1.08999 * 109.58977 * 186.35239 * 23 14 13 40 40 H 1.08999 * 109.49703 * 298.55892 * 24 11 10 41 41 H 1.08993 * 109.50252 * 58.62386 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8198 0.0012 12 6 1.8248 -6.1415 -0.1246 13 6 0.8243 -7.3011 -0.1585 14 7 -0.0414 -7.2135 1.0255 15 6 -0.1829 -8.2685 1.8522 16 8 0.4068 -9.3029 1.6218 17 6 -1.0750 -8.1632 3.0622 18 7 -1.0600 -9.4335 3.7919 19 6 -0.7527 -9.6145 5.0881 20 7 -0.8591 -10.8906 5.3561 21 6 -1.2224 -11.5541 4.2592 22 7 -1.3578 -10.7049 3.2748 23 6 -0.7545 -5.9560 1.2878 24 6 0.2680 -4.8096 1.3085 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.6845 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8894 29 1 0.3796 -4.7131 -0.8407 30 1 2.4908 -6.2605 0.7301 31 1 2.4100 -6.1388 -1.0442 32 1 1.3628 -8.2487 -0.1481 33 1 0.2167 -7.2359 -1.0610 34 1 -0.7133 -7.3663 3.7120 35 1 -2.0933 -7.9391 2.7446 36 1 -0.4700 -8.8411 5.7868 37 1 -1.3790 -12.6207 4.1940 38 1 -1.4880 -5.7809 0.5007 39 1 -1.2580 -6.0158 2.2526 40 1 0.9487 -4.9412 2.1496 41 1 -0.2547 -3.8585 1.4089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206916248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:55 Heat of formation + Delta-G solvation = 48.757968 kcal Electronic energy + Delta-G solvation = -23170.347441 eV Core-core repulsion = 19700.746713 eV Total energy + Delta-G solvation = -3469.600727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.00410 -41.23597 -38.95552 -36.57079 -35.11788 -34.44865 -32.53083 -32.14455 -31.87817 -29.40008 -27.88051 -25.51885 -24.33356 -23.72462 -22.90120 -22.76799 -21.48160 -20.11280 -19.16524 -18.54056 -18.15122 -16.87483 -16.81984 -16.68251 -16.11947 -15.76329 -15.58752 -15.38383 -15.31367 -15.04288 -14.82963 -14.50247 -14.05472 -13.95755 -13.69617 -13.48912 -13.11951 -12.92934 -12.78358 -12.75847 -12.20888 -12.11584 -11.95663 -11.66971 -11.55124 -11.32403 -11.25830 -11.01164 -10.91945 -10.76372 -10.49236 -9.71941 -8.96497 -7.94476 -5.21603 0.68241 1.28695 1.45216 1.48297 1.49240 1.58499 1.94211 2.05569 2.56857 3.23221 3.39560 3.54362 3.64141 3.76337 3.80953 3.90303 4.05991 4.08387 4.11489 4.28827 4.38542 4.39709 4.43758 4.59708 4.74071 4.79240 4.84452 4.96003 5.05672 5.07828 5.18998 5.24254 5.29931 5.47907 5.49454 5.55579 5.56645 5.86788 6.29035 6.30008 7.01255 7.13456 7.36300 8.12352 8.36859 9.28898 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032328 B = 0.002742 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.915575 B =10210.793472 C =10658.222503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.156 3.844 11 C -0.085 4.085 12 C -0.114 4.114 13 C 0.117 3.883 14 N -0.602 5.602 15 C 0.499 3.501 16 O -0.570 6.570 17 C 0.109 3.891 18 N -0.377 5.377 19 C 0.263 3.737 20 N -0.576 5.576 21 C 0.185 3.815 22 N -0.337 5.337 23 C 0.108 3.892 24 C -0.120 4.120 25 H 0.251 0.749 26 H 0.377 0.623 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.177 0.823 35 H 0.144 0.856 36 H 0.265 0.735 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 -16.872 7.757 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.030 3.970 11 C -0.104 4.104 12 C -0.153 4.153 13 C -0.005 4.005 14 N -0.336 5.336 15 C 0.286 3.714 16 O -0.448 6.448 17 C -0.016 4.016 18 N -0.168 5.168 19 C -0.033 4.033 20 N -0.304 5.304 21 C -0.118 4.118 22 N -0.164 5.164 23 C -0.013 4.013 24 C -0.159 4.159 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.194 0.806 35 H 0.161 0.839 36 H 0.281 0.719 37 H 0.252 0.748 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.845 -17.601 7.169 19.390 hybrid contribution 0.341 1.353 -0.339 1.436 sum -3.504 -16.248 6.830 17.970 Atomic orbital electron populations 1.69785 1.06320 1.25953 1.59540 1.25463 0.96396 1.00737 1.03811 0.85156 0.78169 0.80226 0.76701 1.19471 1.22170 1.21898 1.19620 0.91356 0.85571 1.41038 0.91196 1.42538 1.05721 1.00896 1.89262 1.20816 0.93945 0.85096 0.97161 1.21195 0.97057 0.93465 0.98706 1.21792 0.97570 0.92887 1.03009 1.21551 0.92533 0.99027 0.87421 1.48202 1.46518 1.13119 1.25728 1.21011 0.82399 0.83027 0.84932 1.90764 1.49100 1.30393 1.74561 1.22040 1.03290 0.82733 0.93532 1.50165 1.50991 1.06580 1.09044 1.27007 0.94460 0.96178 0.85640 1.70538 1.25106 1.04438 1.30313 1.26508 0.97701 1.02122 0.85483 1.78096 1.24947 0.89687 1.23637 1.22129 0.93927 0.80985 1.04307 1.21911 0.98251 0.98517 0.97198 0.93970 0.78981 0.96625 0.96880 0.91334 0.91968 0.89973 0.90460 0.90348 0.80622 0.83864 0.71949 0.74802 0.89767 0.86231 0.91556 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.30 13.06 21.65 0.28 -56.01 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 44.72 29.55 68.60 2.03 46.74 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.74 -35.13 5.32 -343.43 -1.83 -36.96 16 10 C 0.16 5.74 5.65 86.38 0.49 6.23 16 11 C -0.09 -2.29 2.19 -10.77 -0.02 -2.31 16 12 C -0.11 -2.55 5.36 30.67 0.16 -2.38 16 13 C 0.12 2.47 6.43 86.36 0.56 3.03 16 14 N -0.60 -11.39 2.97 -818.07 -2.43 -13.81 16 15 C 0.50 10.60 7.74 87.66 0.68 11.28 16 16 O -0.57 -17.99 15.15 -3.03 -0.05 -18.04 16 17 C 0.11 1.33 5.38 85.63 0.46 1.79 16 18 N -0.38 -7.08 3.41 -355.80 -1.21 -8.30 16 19 C 0.26 4.08 12.63 180.36 2.28 6.36 16 20 N -0.58 -12.36 11.19 -204.00 -2.28 -14.65 16 21 C 0.18 4.06 13.03 180.77 2.36 6.42 16 22 N -0.34 -8.59 11.81 -61.25 -0.72 -9.31 16 23 C 0.11 1.62 6.37 86.51 0.55 2.17 16 24 C -0.12 -2.73 5.26 30.82 0.16 -2.57 16 25 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 26 H 0.38 18.59 6.84 -92.71 -0.63 17.95 16 27 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.87 7.01 -2.39 -0.02 1.86 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.18 0.53 7.65 -2.39 -0.02 0.51 16 35 H 0.14 1.09 7.93 -2.39 -0.02 1.07 16 36 H 0.27 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.24 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 0.86 5.93 -2.39 -0.01 0.85 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.93 7.15 -2.39 -0.02 1.91 16 Total: -1.00 -79.93 339.20 3.17 -76.76 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.41 Total: 19.34 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 8.98 Total: 14.23 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -8.19 Total: -139.04 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -79.93 3.17 -76.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206916248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.517 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds