Wall clock time and date at job start Tue Mar 31 2020 03:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 119.99964 * 2 1 4 4 H 1.48501 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47293 * 299.99519 * 3 2 1 6 6 H 1.48497 * 109.47363 * 59.99961 * 3 2 1 7 7 C 1.38816 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99734 * 163.06979 * 7 2 1 9 9 N 1.36939 * 119.99772 * 343.07413 * 7 2 1 10 10 C 1.46923 * 120.63074 * 331.84744 * 9 7 2 11 11 C 1.53195 * 108.77555 * 233.58860 * 10 9 7 12 12 C 1.53045 * 109.31411 * 305.36576 * 11 10 9 13 13 C 1.52995 * 109.46268 * 181.38311 * 12 11 10 14 14 N 1.46500 * 109.47336 * 174.97114 * 13 12 11 15 15 C 1.34769 * 120.00216 * 180.02562 * 14 13 12 16 16 O 1.21277 * 120.00284 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99961 * 180.02562 * 15 14 13 18 18 N 1.46504 * 109.47076 * 179.97438 * 17 15 14 19 19 N 1.28605 * 124.61670 * 269.70136 * 18 17 15 20 20 C 1.31372 * 108.71540 * 180.26461 * 19 18 17 21 21 C 1.39681 * 105.90547 * 359.97438 * 20 19 18 22 22 N 1.28598 * 124.61852 * 89.99757 * 18 17 15 23 23 C 1.53040 * 109.52460 * 61.36675 * 12 11 10 24 24 C 1.46928 * 120.62725 * 151.82549 * 9 7 2 25 25 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.58794 * 113.80550 * 10 9 7 27 27 H 1.09000 * 109.70962 * 353.44418 * 10 9 7 28 28 H 1.08996 * 109.50283 * 185.41598 * 11 10 9 29 29 H 1.08998 * 109.52445 * 65.33111 * 11 10 9 30 30 H 1.09000 * 109.45761 * 301.36043 * 12 11 10 31 31 H 1.09003 * 109.46946 * 54.97277 * 13 12 11 32 32 H 1.09005 * 109.47361 * 294.97533 * 13 12 11 33 33 H 0.97000 * 119.99602 * 0.02562 * 14 13 12 34 34 H 1.08996 * 109.46950 * 60.00157 * 17 15 14 35 35 H 1.09001 * 109.46758 * 299.99840 * 17 15 14 36 36 H 1.08007 * 127.05247 * 179.97438 * 20 19 18 37 37 H 1.07990 * 127.05232 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.49860 * 58.58625 * 23 12 11 39 39 H 1.09000 * 109.50128 * 178.67510 * 23 12 11 40 40 H 1.09000 * 109.58346 * 246.19456 * 24 9 7 41 41 H 1.08991 * 109.58857 * 6.48375 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2718 9 7 1.3700 -2.3622 0.3463 10 6 0.2260 -2.3398 1.2680 11 6 0.4973 -3.3188 2.4146 12 6 0.8119 -4.7006 1.8367 13 6 1.0495 -5.6892 2.9799 14 7 1.2318 -7.0354 2.4315 15 6 1.4561 -8.0754 3.2587 16 8 1.5075 -7.8969 4.4572 17 6 1.6442 -9.4601 2.6944 18 7 1.8717 -10.4068 3.7891 19 7 3.0279 -10.7131 4.2618 20 6 2.8698 -11.5902 5.2269 21 6 1.4939 -11.8114 5.3217 22 7 0.9429 -11.0488 4.4047 23 6 2.0674 -4.6170 0.9656 24 6 1.8138 -3.6529 -0.1977 25 1 -0.4850 0.8400 -0.0004 26 1 -0.6771 -2.6405 0.7368 27 1 0.0966 -1.3345 1.6688 28 1 -0.3832 -3.3837 3.0537 29 1 1.3468 -2.9674 3.0003 30 1 -0.0282 -5.0407 1.2312 31 1 0.1898 -5.6832 3.6500 32 1 1.9429 -5.3979 3.5324 33 1 1.1911 -7.1781 1.4729 34 1 2.5044 -9.4659 2.0250 35 1 0.7513 -9.7514 2.1413 36 1 3.6449 -12.0467 5.8248 37 1 0.9871 -12.4736 6.0078 38 1 2.9022 -4.2530 1.5646 39 1 2.3045 -5.6058 0.5732 40 1 1.0401 -4.0606 -0.8483 41 1 2.7331 -3.5132 -0.7662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223320583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:40 Heat of formation + Delta-G solvation = 93.151931 kcal Electronic energy + Delta-G solvation = -23027.071434 eV Core-core repulsion = 19559.395774 eV Total energy + Delta-G solvation = -3467.675661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.73770 -39.94877 -37.91715 -35.13994 -34.02156 -32.94882 -32.60583 -30.92314 -29.85729 -28.84415 -26.62786 -24.10817 -23.09103 -22.55749 -22.08916 -21.11068 -20.68138 -19.20490 -18.01274 -17.77607 -16.77587 -16.02196 -15.98437 -15.74898 -15.08867 -14.85448 -14.55351 -14.15320 -13.94831 -13.67006 -13.54286 -13.27185 -12.80203 -12.42099 -12.38137 -11.92483 -11.84365 -11.39856 -11.03421 -10.99516 -10.76775 -10.57607 -10.51313 -10.51068 -10.29688 -10.23185 -9.96717 -9.63996 -9.57615 -9.41729 -9.20491 -8.50534 -6.70843 -5.82394 -3.25000 1.52535 1.91709 2.26057 2.31089 3.00023 3.34953 3.43234 3.45207 3.92071 4.31371 4.46941 4.51202 4.58231 4.84446 5.00595 5.13174 5.14444 5.29738 5.37126 5.53916 5.77079 5.77403 5.83349 5.95519 5.96617 6.04117 6.23726 6.26067 6.36989 6.39499 6.54360 6.62106 6.69690 6.75303 6.91995 7.21022 7.33157 7.61863 7.76874 7.89367 8.11798 8.41920 9.18148 9.81517 10.37844 11.26164 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.049467 B = 0.002514 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.892524 B =11132.828976 C =11219.165845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.124 3.876 14 N -0.716 5.716 15 C 0.498 3.502 16 O -0.524 6.524 17 C 0.121 3.879 18 N -0.144 5.144 19 N -0.281 5.281 20 C -0.026 4.026 21 C -0.026 4.026 22 N -0.282 5.282 23 C -0.128 4.128 24 C 0.145 3.855 25 H 0.253 0.747 26 H 0.018 0.982 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.198 0.802 37 H 0.198 0.802 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -21.564 5.404 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.109 4.109 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.281 3.719 16 O -0.400 6.400 17 C -0.003 4.003 18 N -0.044 5.044 19 N -0.121 5.121 20 C -0.209 4.209 21 C -0.209 4.209 22 N -0.122 5.122 23 C -0.167 4.167 24 C 0.019 3.981 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.239 0.761 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.215 0.785 37 H 0.215 0.785 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.875 -20.350 5.217 21.091 hybrid contribution 0.496 0.198 0.327 0.626 sum 2.371 -20.152 5.543 21.034 Atomic orbital electron populations 1.70035 1.05269 1.25431 1.54009 1.25054 0.95300 0.98456 1.00887 0.86236 0.79382 0.83942 0.77293 1.20259 1.21722 1.21533 1.19220 0.92553 0.84826 1.41574 0.91692 1.44059 1.35899 1.01538 1.50038 1.20761 0.88614 0.98178 0.87870 1.22185 1.00416 0.94542 1.00145 1.21326 0.98874 0.95381 0.95306 1.21659 1.01778 0.79515 0.96906 1.45964 1.72551 1.08019 1.10351 1.20412 0.77802 0.86176 0.87518 1.90794 1.49460 1.84864 1.14862 1.21719 1.07257 0.85497 0.85830 1.47309 1.00061 1.30417 1.26569 1.74056 1.10154 1.15249 1.12685 1.24794 0.97629 0.99449 0.99014 1.24789 0.93243 1.02471 1.00389 1.74045 1.21002 1.08207 1.08958 1.22089 0.96979 0.98739 0.98888 1.20887 0.97573 0.87036 0.92646 0.93663 0.96410 0.89367 0.93027 0.92357 0.91145 0.91554 0.91368 0.76145 0.84404 0.84443 0.78521 0.78526 0.92110 0.93472 0.96587 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.31 2.99 -172.32 -0.52 -14.82 16 10 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 11 C -0.13 -2.38 5.36 -26.61 -0.14 -2.52 16 12 C -0.09 -1.32 2.19 -90.58 -0.20 -1.52 16 13 C 0.12 1.65 5.06 -4.04 -0.02 1.63 16 14 N -0.72 -7.54 5.27 -60.29 -0.32 -7.86 16 15 C 0.50 6.01 7.90 -10.99 -0.09 5.93 16 16 O -0.52 -9.01 16.43 5.56 0.09 -8.92 16 17 C 0.12 1.04 7.02 -5.19 -0.04 1.00 16 18 N -0.14 -1.71 3.44 -11.66 -0.04 -1.75 16 19 N -0.28 -3.46 12.05 30.68 0.37 -3.10 16 20 C -0.03 -0.25 12.20 -17.21 -0.21 -0.46 16 21 C -0.03 -0.25 12.20 -17.21 -0.21 -0.46 16 22 N -0.28 -3.45 12.05 30.67 0.37 -3.08 16 23 C -0.13 -1.96 5.25 -26.61 -0.14 -2.09 16 24 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 25 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 2.30 6.07 -51.93 -0.31 1.98 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 3.04 7.65 -40.82 -0.31 2.73 16 34 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.20 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.57 7.15 -51.93 -0.37 0.20 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -35.65 340.35 -6.67 -42.32 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.03 Total: -0.39 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.25 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.49 Total: -55.82 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.65 -6.67 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223320583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.471 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds