Wall clock time and date at job start Tue Mar 31 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48502 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47268 * 300.00229 * 3 2 1 6 6 H 1.48505 * 109.46835 * 60.00244 * 3 2 1 7 7 C 1.38815 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99700 * 163.06886 * 7 2 1 9 9 N 1.36932 * 120.00341 * 343.06390 * 7 2 1 10 10 C 1.46935 * 120.62815 * 331.85307 * 9 7 2 11 11 C 1.53188 * 108.77698 * 233.58335 * 10 9 7 12 12 C 1.53042 * 109.31055 * 305.36849 * 11 10 9 13 13 C 1.53004 * 109.45718 * 181.38294 * 12 11 10 14 14 N 1.46495 * 109.47145 * 174.97134 * 13 12 11 15 15 C 1.34779 * 120.00015 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00093 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00057 * 180.02562 * 15 14 13 18 18 C 1.50699 * 109.47039 * 180.02562 * 17 15 14 19 19 N 1.33247 * 125.52320 * 90.00002 * 18 17 15 20 20 C 1.30833 * 109.82500 * 179.97438 * 19 18 17 21 21 N 1.34430 * 108.08154 * 0.02562 * 20 19 18 22 22 H 0.96992 * 126.82721 * 179.73876 * 21 20 19 23 23 N 1.30709 * 125.53024 * 269.99812 * 18 17 15 24 24 C 1.53039 * 109.52878 * 61.37600 * 12 11 10 25 25 C 1.46919 * 120.63138 * 151.83093 * 9 7 2 26 26 H 0.97003 * 120.00424 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.57976 * 113.79854 * 10 9 7 28 28 H 1.09000 * 109.70432 * 353.45042 * 10 9 7 29 29 H 1.08997 * 109.49574 * 185.41468 * 11 10 9 30 30 H 1.09000 * 109.49275 * 65.31780 * 11 10 9 31 31 H 1.08994 * 109.45966 * 301.35396 * 12 11 10 32 32 H 1.08996 * 109.47057 * 54.96922 * 13 12 11 33 33 H 1.09007 * 109.47413 * 294.97377 * 13 12 11 34 34 H 0.97002 * 120.00268 * 0.02562 * 14 13 12 35 35 H 1.08990 * 109.47006 * 60.00381 * 17 15 14 36 36 H 1.09003 * 109.46677 * 300.00382 * 17 15 14 37 37 H 1.08000 * 125.96311 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.50317 * 58.57243 * 24 12 11 39 39 H 1.08998 * 109.49803 * 178.67572 * 24 12 11 40 40 H 1.09004 * 109.58486 * 246.19868 * 25 9 7 41 41 H 1.08994 * 109.59033 * 6.48425 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3444 10 6 0.2260 -2.3408 1.2662 11 6 0.4974 -3.3207 2.4120 12 6 0.8119 -4.7020 1.8329 13 6 1.0496 -5.6915 2.9753 14 7 1.2319 -7.0372 2.4258 15 6 1.4572 -8.0778 3.2522 16 8 1.5087 -7.9002 4.4508 17 6 1.6453 -9.4621 2.6869 18 6 1.8793 -10.4367 3.8121 19 7 0.9315 -11.1116 4.4615 20 6 1.4758 -11.8698 5.3784 21 7 2.8072 -11.6901 5.3321 22 1 3.4714 -12.1168 5.8954 23 7 3.0449 -10.7572 4.3095 24 6 2.0674 -4.6177 0.9619 25 6 1.8138 -3.6527 -0.2006 26 1 -0.4851 0.8400 0.0004 27 1 -0.6771 -2.6410 0.7347 28 1 0.0966 -1.3357 1.6677 29 1 -0.3832 -3.3860 3.0510 30 1 1.3471 -2.9695 2.9974 31 1 -0.0282 -5.0416 1.2272 32 1 0.1900 -5.6861 3.6455 33 1 1.9430 -5.4007 3.5281 34 1 1.1911 -7.1793 1.4671 35 1 2.5048 -9.4671 2.0168 36 1 0.7520 -9.7532 2.1342 37 1 0.9475 -12.5251 6.0551 38 1 2.9023 -4.2542 1.5611 39 1 2.3045 -5.6063 0.5687 40 1 1.0400 -4.0599 -0.8515 41 1 2.7330 -3.5126 -0.7691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225132121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:22 Heat of formation + Delta-G solvation = 61.079610 kcal Electronic energy + Delta-G solvation = -22887.748714 eV Core-core repulsion = 19418.682294 eV Total energy + Delta-G solvation = -3469.066421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37280 -39.67239 -37.79350 -34.94987 -33.58106 -32.84196 -31.95378 -30.84426 -29.82929 -29.22676 -26.59943 -24.01379 -23.10590 -22.28444 -21.50785 -20.89159 -20.10088 -19.08231 -18.62643 -17.28704 -16.66056 -16.03165 -15.74577 -15.43927 -15.05526 -14.79901 -14.02817 -13.77895 -13.74502 -13.50779 -13.38981 -13.16601 -12.52412 -12.38961 -12.31258 -12.20670 -11.77445 -11.31640 -10.97856 -10.72348 -10.49105 -10.45963 -10.32966 -10.23111 -10.18293 -10.12832 -9.93569 -9.76453 -9.52862 -9.40189 -8.97034 -8.45808 -6.65287 -5.77653 -3.19967 1.32857 2.35371 2.53075 2.62777 3.30820 3.38122 3.46143 3.48308 3.81890 4.33088 4.51008 4.60340 4.80189 5.10073 5.15090 5.21420 5.26892 5.39917 5.43285 5.62314 5.89128 5.89906 5.96998 6.06422 6.08964 6.17165 6.34272 6.44620 6.49111 6.62267 6.71016 6.72206 6.78631 6.83411 6.99988 7.38498 7.51331 7.67820 7.78742 7.81360 8.21623 8.46868 9.23081 9.86704 10.43356 11.30853 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.049148 B = 0.002473 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.574931 B =11321.169384 C =11403.025020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.124 3.876 14 N -0.723 5.723 15 C 0.519 3.481 16 O -0.536 6.536 17 C -0.051 4.051 18 C 0.251 3.749 19 N -0.535 5.535 20 C 0.262 3.738 21 N -0.484 5.484 22 H 0.441 0.559 23 N -0.304 5.304 24 C -0.127 4.127 25 C 0.145 3.855 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.223 0.777 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -23.495 7.369 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.173 4.173 12 C -0.109 4.109 13 C 0.001 3.999 14 N -0.375 5.375 15 C 0.303 3.697 16 O -0.412 6.412 17 C -0.094 4.094 18 C -0.033 4.033 19 N -0.263 5.263 20 C -0.037 4.037 21 N -0.202 5.202 22 H 0.287 0.713 23 N -0.133 5.133 24 C -0.167 4.167 25 C 0.019 3.981 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.237 0.763 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.239 0.761 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.034 0.966 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.621 -22.854 7.864 24.311 hybrid contribution 0.671 0.321 0.195 0.768 sum 3.292 -22.533 8.059 24.156 Atomic orbital electron populations 1.70037 1.05253 1.25367 1.54112 1.25046 0.95291 0.98414 1.00997 0.86243 0.79381 0.84013 0.77260 1.20280 1.21761 1.21560 1.19221 0.92539 0.84840 1.41430 0.91727 1.44059 1.35914 1.01550 1.50038 1.20762 0.88604 0.98146 0.87916 1.22177 1.00353 0.94673 1.00071 1.21313 0.98790 0.95357 0.95423 1.21583 1.01515 0.80061 0.96704 1.46007 1.73077 1.08026 1.10353 1.20131 0.76765 0.85819 0.87000 1.90729 1.50034 1.85305 1.15182 1.19918 1.06092 0.89311 0.94029 1.23309 0.86041 0.96680 0.97235 1.70362 1.33784 1.11977 1.10144 1.26070 0.82537 0.97729 0.97396 1.48075 1.08441 1.34518 1.29198 0.71320 1.77986 1.22767 1.08599 1.03975 1.22079 0.97012 0.98738 0.98822 1.20892 0.97517 0.87019 0.92706 0.93704 0.96432 0.89438 0.93063 0.92430 0.91210 0.91783 0.91665 0.76348 0.86363 0.85912 0.76092 0.92196 0.93389 0.96586 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.63 2.99 -172.31 -0.52 -15.14 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 12 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 13 C 0.12 1.77 5.06 -4.04 -0.02 1.75 16 14 N -0.72 -8.59 5.27 -60.29 -0.32 -8.91 16 15 C 0.52 6.91 7.82 -10.98 -0.09 6.82 16 16 O -0.54 -9.60 16.03 5.56 0.09 -9.52 16 17 C -0.05 -0.50 6.33 -29.03 -0.18 -0.69 16 18 C 0.25 3.09 6.63 -156.85 -1.04 2.05 16 19 N -0.53 -6.31 11.19 -11.98 -0.13 -6.44 16 20 C 0.26 2.00 13.13 -90.65 -1.19 0.81 16 21 N -0.48 -3.83 7.45 29.53 0.22 -3.61 16 22 H 0.44 1.70 8.96 -182.34 -1.63 0.06 16 23 N -0.30 -3.71 12.80 32.42 0.41 -3.29 16 24 C -0.13 -2.05 5.25 -26.61 -0.14 -2.19 16 25 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.68 7.65 -40.82 -0.31 3.37 16 35 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.22 0.48 8.06 -52.49 -0.42 0.05 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -36.97 339.35 -10.06 -47.03 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.24 Total: -0.57 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -3.27 Total: 4.19 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.29 Total: -62.93 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.97 -10.06 -47.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225132121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.111 kcal (2) G-P(sol) polarization free energy of solvation -36.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds