Wall clock time and date at job start Tue Mar 31 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48502 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47268 * 300.00229 * 3 2 1 6 6 H 1.48505 * 109.46835 * 60.00244 * 3 2 1 7 7 C 1.38815 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99700 * 163.06886 * 7 2 1 9 9 N 1.36932 * 120.00341 * 343.06390 * 7 2 1 10 10 C 1.46935 * 120.62815 * 331.85307 * 9 7 2 11 11 C 1.53188 * 108.77698 * 233.58335 * 10 9 7 12 12 C 1.53042 * 109.31055 * 305.36849 * 11 10 9 13 13 C 1.53004 * 109.45718 * 181.38294 * 12 11 10 14 14 N 1.46495 * 109.47145 * 174.97134 * 13 12 11 15 15 C 1.34779 * 120.00015 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00093 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00057 * 180.02562 * 15 14 13 18 18 C 1.50699 * 109.47039 * 180.02562 * 17 15 14 19 19 N 1.33247 * 125.52320 * 90.00002 * 18 17 15 20 20 C 1.30833 * 109.82500 * 179.97438 * 19 18 17 21 21 N 1.34430 * 108.08154 * 0.02562 * 20 19 18 22 22 H 0.96992 * 126.82721 * 179.73876 * 21 20 19 23 23 N 1.30709 * 125.53024 * 269.99812 * 18 17 15 24 24 C 1.53039 * 109.52878 * 61.37600 * 12 11 10 25 25 C 1.46919 * 120.63138 * 151.83093 * 9 7 2 26 26 H 0.97003 * 120.00424 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.57976 * 113.79854 * 10 9 7 28 28 H 1.09000 * 109.70432 * 353.45042 * 10 9 7 29 29 H 1.08997 * 109.49574 * 185.41468 * 11 10 9 30 30 H 1.09000 * 109.49275 * 65.31780 * 11 10 9 31 31 H 1.08994 * 109.45966 * 301.35396 * 12 11 10 32 32 H 1.08996 * 109.47057 * 54.96922 * 13 12 11 33 33 H 1.09007 * 109.47413 * 294.97377 * 13 12 11 34 34 H 0.97002 * 120.00268 * 0.02562 * 14 13 12 35 35 H 1.08990 * 109.47006 * 60.00381 * 17 15 14 36 36 H 1.09003 * 109.46677 * 300.00382 * 17 15 14 37 37 H 1.08000 * 125.96311 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.50317 * 58.57243 * 24 12 11 39 39 H 1.08998 * 109.49803 * 178.67572 * 24 12 11 40 40 H 1.09004 * 109.58486 * 246.19868 * 25 9 7 41 41 H 1.08994 * 109.59033 * 6.48425 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3444 10 6 0.2260 -2.3408 1.2662 11 6 0.4974 -3.3207 2.4120 12 6 0.8119 -4.7020 1.8329 13 6 1.0496 -5.6915 2.9753 14 7 1.2319 -7.0372 2.4258 15 6 1.4572 -8.0778 3.2522 16 8 1.5087 -7.9002 4.4508 17 6 1.6453 -9.4621 2.6869 18 6 1.8793 -10.4367 3.8121 19 7 0.9315 -11.1116 4.4615 20 6 1.4758 -11.8698 5.3784 21 7 2.8072 -11.6901 5.3321 22 1 3.4714 -12.1168 5.8954 23 7 3.0449 -10.7572 4.3095 24 6 2.0674 -4.6177 0.9619 25 6 1.8138 -3.6527 -0.2006 26 1 -0.4851 0.8400 0.0004 27 1 -0.6771 -2.6410 0.7347 28 1 0.0966 -1.3357 1.6677 29 1 -0.3832 -3.3860 3.0510 30 1 1.3471 -2.9695 2.9974 31 1 -0.0282 -5.0416 1.2272 32 1 0.1900 -5.6861 3.6455 33 1 1.9430 -5.4007 3.5281 34 1 1.1911 -7.1793 1.4671 35 1 2.5048 -9.4671 2.0168 36 1 0.7520 -9.7532 2.1342 37 1 0.9475 -12.5251 6.0551 38 1 2.9023 -4.2542 1.5611 39 1 2.3045 -5.6063 0.5687 40 1 1.0400 -4.0599 -0.8515 41 1 2.7330 -3.5126 -0.7691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225132121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:22 Heat of formation + Delta-G solvation = 34.528463 kcal Electronic energy + Delta-G solvation = -22888.900058 eV Core-core repulsion = 19418.682294 eV Total energy + Delta-G solvation = -3470.217765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.05628 -40.76429 -39.30538 -36.39937 -34.52870 -34.23817 -32.77184 -32.44939 -31.41034 -30.22019 -28.12519 -25.70485 -23.89860 -23.71444 -22.83637 -22.07841 -21.08447 -20.56895 -19.26881 -18.72109 -18.11056 -17.07921 -16.82190 -16.59786 -16.19169 -15.93120 -15.64463 -15.28427 -15.04487 -14.75569 -14.72601 -14.37077 -13.94036 -13.80915 -13.53738 -13.13441 -13.03140 -12.95138 -12.75067 -12.57674 -12.22517 -11.98216 -11.82277 -11.59453 -11.32542 -11.17034 -11.08173 -11.06722 -10.94982 -10.60664 -10.51767 -10.06204 -8.64899 -7.86111 -5.30768 0.66198 1.45539 1.47903 1.57930 1.63813 1.72918 1.86971 2.40654 2.52043 3.19357 3.28312 3.69342 3.73826 3.85014 3.91786 3.98891 4.11666 4.20461 4.48230 4.54342 4.57117 4.60124 4.73163 4.76063 4.84466 4.96497 5.05247 5.17578 5.25287 5.31782 5.32934 5.36702 5.41447 5.48573 5.57957 5.67997 5.81407 6.27674 6.41638 6.57715 7.11056 7.17363 7.26167 7.90190 8.40540 9.20067 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.049148 B = 0.002473 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.574931 B =11321.169384 C =11403.025020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.053 4.053 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.123 4.123 12 C -0.077 4.077 13 C 0.138 3.862 14 N -0.710 5.710 15 C 0.519 3.481 16 O -0.587 6.587 17 C -0.046 4.046 18 C 0.232 3.768 19 N -0.576 5.576 20 C 0.274 3.726 21 N -0.476 5.476 22 H 0.457 0.543 23 N -0.342 5.342 24 C -0.115 4.115 25 C 0.139 3.861 26 H 0.249 0.751 27 H 0.000 1.000 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.418 0.582 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.272 0.728 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.021 0.979 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -25.816 7.512 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.337 5.337 10 C 0.052 3.948 11 C -0.163 4.163 12 C -0.096 4.096 13 C 0.014 3.986 14 N -0.362 5.362 15 C 0.305 3.695 16 O -0.467 6.467 17 C -0.088 4.088 18 C -0.052 4.052 19 N -0.305 5.305 20 C -0.024 4.024 21 N -0.196 5.196 22 H 0.306 0.694 23 N -0.173 5.173 24 C -0.153 4.153 25 C 0.014 3.986 26 H 0.058 0.942 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.256 0.744 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.288 0.712 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.038 0.962 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.288 -25.225 7.984 26.662 hybrid contribution 0.474 0.957 0.173 1.082 sum 3.761 -24.268 8.157 25.877 Atomic orbital electron populations 1.70179 1.06580 1.25683 1.55671 1.25774 0.96056 1.01422 1.01547 0.85261 0.78639 0.80130 0.76753 1.19211 1.21867 1.21810 1.19530 0.92756 0.86203 1.40476 0.91796 1.44349 1.35976 1.02528 1.50825 1.20560 0.87885 0.97423 0.88972 1.21983 1.00743 0.95279 0.98257 1.21145 0.98947 0.93800 0.95713 1.21233 1.00738 0.80887 0.95757 1.45829 1.72382 1.06842 1.11192 1.20704 0.75386 0.87046 0.86322 1.90707 1.52352 1.86152 1.17480 1.20023 1.08410 0.86490 0.93841 1.23715 0.86230 0.97255 0.97952 1.70352 1.34776 1.13542 1.11808 1.27017 0.82345 0.96627 0.96458 1.48021 1.09301 1.33719 1.28528 0.69414 1.77866 1.23571 1.10224 1.05590 1.21940 0.96691 0.99605 0.97106 1.21091 0.97329 0.85892 0.94290 0.94173 0.98203 0.93208 0.91410 0.93379 0.90091 0.92253 0.92980 0.74376 0.83795 0.83341 0.71238 0.93369 0.89230 0.96151 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 11.19 21.65 0.24 -55.41 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 3 Si 0.96 45.35 29.59 68.60 2.03 47.38 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.26 -14.32 9.58 84.04 0.81 -13.52 16 8 H 0.06 3.46 7.88 -2.91 -0.02 3.44 16 9 N -0.61 -30.46 2.99 -699.08 -2.09 -32.55 16 10 C 0.18 8.47 5.30 86.36 0.46 8.93 16 11 C -0.12 -4.50 5.36 30.67 0.16 -4.34 16 12 C -0.08 -2.24 2.19 -10.77 -0.02 -2.27 16 13 C 0.14 3.67 5.06 86.38 0.44 4.10 16 14 N -0.71 -14.93 5.27 -463.05 -2.44 -17.37 16 15 C 0.52 12.85 7.82 87.66 0.69 13.53 16 16 O -0.59 -20.63 16.03 -3.03 -0.05 -20.68 16 17 C -0.05 -0.80 6.33 29.10 0.18 -0.61 16 18 C 0.23 5.36 6.63 138.63 0.92 6.28 16 19 N -0.58 -12.61 11.19 -191.80 -2.15 -14.76 16 20 C 0.27 3.52 13.13 180.36 2.37 5.89 16 21 N -0.48 -6.66 7.45 -60.49 -0.45 -7.12 16 22 H 0.46 2.66 8.96 -213.11 -1.91 0.75 16 23 N -0.34 -7.93 12.80 -51.33 -0.66 -8.59 16 24 C -0.11 -3.42 5.25 30.67 0.16 -3.26 16 25 C 0.14 5.44 6.52 86.37 0.56 6.00 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.00 -0.01 8.14 -2.38 -0.02 -0.02 16 28 H 0.05 2.74 6.07 -2.39 -0.01 2.72 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.42 6.03 7.65 -92.71 -0.71 5.32 16 35 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.27 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 1.96 7.15 -2.39 -0.02 1.95 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 Total: -1.00 -83.17 339.35 0.02 -83.16 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -1.56 Total: 7.74 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 7.14 Total: 18.18 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -7.54 Total: -135.79 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -83.17 0.02 -83.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225132121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.686 kcal (2) G-P(sol) polarization free energy of solvation -83.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds