Wall clock time and date at job start Tue Mar 31 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99914 * 2 1 4 4 H 1.48502 * 109.47438 * 272.94491 * 3 2 1 5 5 H 1.48498 * 109.47244 * 32.94818 * 3 2 1 6 6 H 1.48499 * 109.47138 * 152.94623 * 3 2 1 7 7 C 1.38815 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99806 * 339.33917 * 7 2 1 9 9 N 1.36936 * 120.00177 * 159.34159 * 7 2 1 10 10 C 1.46924 * 120.63261 * 332.62802 * 9 7 2 11 11 C 1.53190 * 108.77826 * 233.58782 * 10 9 7 12 12 C 1.53035 * 109.31376 * 305.36804 * 11 10 9 13 13 C 1.53001 * 109.46265 * 181.38595 * 12 11 10 14 14 N 1.46496 * 109.46989 * 174.97126 * 13 12 11 15 15 C 1.34784 * 119.99687 * 180.02562 * 14 13 12 16 16 O 1.21275 * 119.99794 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99872 * 180.02562 * 15 14 13 18 18 N 1.46495 * 109.46955 * 179.97438 * 17 15 14 19 19 C 1.34423 * 126.82420 * 124.99598 * 18 17 15 20 20 N 1.30835 * 108.07763 * 179.97438 * 19 18 17 21 21 C 1.33238 * 109.82957 * 0.02562 * 20 19 18 22 22 N 1.30708 * 108.94611 * 0.26517 * 21 20 19 23 23 C 1.53039 * 109.53065 * 61.36529 * 12 11 10 24 24 C 1.46922 * 120.62714 * 152.60860 * 9 7 2 25 25 H 0.96995 * 120.00204 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.58562 * 113.79770 * 10 9 7 27 27 H 1.09008 * 109.70242 * 353.44704 * 10 9 7 28 28 H 1.08995 * 109.49724 * 185.41474 * 11 10 9 29 29 H 1.09002 * 109.52038 * 65.33006 * 11 10 9 30 30 H 1.09006 * 109.45962 * 301.36102 * 12 11 10 31 31 H 1.08997 * 109.46966 * 54.97067 * 13 12 11 32 32 H 1.08993 * 109.46611 * 294.97061 * 13 12 11 33 33 H 0.97001 * 120.00383 * 359.97438 * 14 13 12 34 34 H 1.08999 * 109.47133 * 59.99392 * 17 15 14 35 35 H 1.09001 * 109.46650 * 299.99395 * 17 15 14 36 36 H 1.07995 * 125.96315 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.52835 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.49405 * 58.58178 * 23 12 11 39 39 H 1.09001 * 109.50278 * 178.67482 * 23 12 11 40 40 H 1.09003 * 109.59073 * 246.19521 * 24 9 7 41 41 H 1.09001 * 109.59044 * 6.48472 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0825 -1.3982 5 1 1.4802 2.6339 0.7615 6 1 3.5775 1.4230 0.6368 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3291 9 7 3.3137 -1.2400 -0.4189 10 6 3.8173 -0.2583 -1.3891 11 6 4.4622 -1.0077 -2.5593 12 6 5.5289 -1.9642 -2.0216 13 6 6.1992 -2.6892 -3.1903 14 7 7.3000 -3.5142 -2.6864 15 6 8.0390 -4.2476 -3.5424 16 8 7.7924 -4.2249 -4.7296 17 6 9.1710 -5.0967 -3.0240 18 7 9.8129 -5.7908 -4.1430 19 6 11.1168 -5.7606 -4.4686 20 7 11.2881 -6.5090 -5.5280 21 6 10.1220 -7.0308 -5.9062 22 7 9.1873 -6.6153 -5.0925 23 6 4.8750 -2.9898 -1.0928 24 6 4.2351 -2.2629 0.0942 25 1 -0.4850 0.8400 0.0004 26 1 4.5597 0.3805 -0.9107 27 1 2.9922 0.3521 -1.7563 28 1 4.9246 -0.2920 -3.2390 29 1 3.6998 -1.5756 -3.0925 30 1 6.2780 -1.3984 -1.4676 31 1 6.5884 -1.9566 -3.8973 32 1 5.4686 -3.3246 -3.6907 33 1 7.4975 -3.5320 -1.7369 34 1 8.7814 -5.8297 -2.3175 35 1 9.9015 -4.4616 -2.5228 36 1 11.8882 -5.2139 -3.9468 37 1 9.9724 -7.6867 -6.7511 38 1 4.1084 -3.5390 -1.6396 39 1 5.6313 -3.6852 -0.7286 40 1 5.0117 -1.7877 0.6936 41 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225356627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:13 Heat of formation + Delta-G solvation = 82.137773 kcal Electronic energy + Delta-G solvation = -23065.938168 eV Core-core repulsion = 19597.784898 eV Total energy + Delta-G solvation = -3468.153270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.33353 -39.96485 -38.20233 -35.30466 -34.33382 -32.99260 -31.46183 -31.21068 -30.43923 -28.86887 -26.71398 -23.96756 -23.02862 -22.37777 -22.25771 -21.35083 -20.72830 -19.48492 -17.81387 -17.66638 -16.80596 -16.26131 -15.91082 -15.44779 -15.21379 -14.95360 -14.53654 -14.25777 -14.12525 -13.85880 -13.70731 -13.33202 -13.11058 -12.92104 -12.42613 -12.16369 -12.05111 -11.84951 -11.47620 -10.89950 -10.72178 -10.61185 -10.56403 -10.29495 -10.19641 -10.04165 -9.95212 -9.87201 -9.68635 -9.47469 -9.26090 -8.66494 -7.02829 -5.98735 -3.34893 1.32904 1.85434 2.25393 2.72754 2.87441 3.27949 3.44275 3.46606 4.00291 4.04901 4.29114 4.48764 4.51224 4.58166 4.83204 4.88959 4.95977 5.00998 5.13478 5.37213 5.59762 5.67169 5.78956 5.82640 5.90315 5.97937 6.09024 6.12131 6.16439 6.28101 6.31572 6.40672 6.41817 6.55849 6.59069 6.63668 6.89497 7.18028 7.79576 7.89391 7.92141 8.28990 8.89998 9.68020 10.05386 11.17270 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048090 B = 0.002634 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.104444 B =10625.980345 C =10702.282630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.126 3.874 11 C -0.126 4.126 12 C -0.091 4.091 13 C 0.125 3.875 14 N -0.722 5.722 15 C 0.496 3.504 16 O -0.513 6.513 17 C 0.110 3.890 18 N -0.370 5.370 19 C 0.253 3.747 20 N -0.545 5.545 21 C 0.191 3.809 22 N -0.288 5.288 23 C -0.129 4.129 24 C 0.148 3.852 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.219 0.781 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.219 -9.148 -4.001 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.330 5.330 10 C 0.001 3.999 11 C -0.166 4.166 12 C -0.110 4.110 13 C 0.002 3.998 14 N -0.375 5.375 15 C 0.279 3.721 16 O -0.387 6.387 17 C -0.016 4.016 18 N -0.161 5.161 19 C -0.043 4.043 20 N -0.272 5.272 21 C -0.112 4.112 22 N -0.114 5.114 23 C -0.168 4.168 24 C 0.022 3.978 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.235 0.765 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.360 -9.264 -5.023 23.818 hybrid contribution 0.548 1.229 0.661 1.500 sum 21.909 -8.034 -4.361 23.739 Atomic orbital electron populations 1.69837 1.05744 1.26589 1.52893 1.25291 0.95232 0.97618 0.99495 0.86939 0.79958 0.84684 0.76991 1.21618 1.23164 1.19645 1.18919 0.85020 0.94745 1.40247 0.89742 1.44347 1.08650 1.33370 1.46599 1.21322 0.97259 0.92009 0.89338 1.21997 0.97462 0.98128 0.99039 1.21311 0.97512 0.96920 0.95230 1.21575 0.87740 0.93562 0.96887 1.45983 1.33831 1.46918 1.10747 1.20386 0.83707 0.80764 0.87212 1.90814 1.68734 1.63424 1.15701 1.21604 0.96669 0.96655 0.86712 1.49992 1.06691 1.36470 1.22993 1.26076 0.86496 0.97700 0.94071 1.70526 1.27970 1.15445 1.13282 1.26042 0.85527 0.99699 0.99907 1.78228 1.20987 1.09809 1.02381 1.22087 0.99327 0.97082 0.98352 1.20909 0.92422 0.91376 0.93049 0.92736 0.95789 0.90829 0.92559 0.91307 0.91100 0.91614 0.91196 0.76348 0.86196 0.85136 0.76459 0.76696 0.91616 0.93026 0.96141 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.56 13.97 55.49 0.78 -26.78 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 21.95 24.34 -169.99 -4.14 17.81 16 4 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.56 6.63 56.52 0.37 -6.19 16 7 C -0.26 -7.13 10.03 -15.06 -0.15 -7.28 16 8 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 9 N -0.61 -13.73 2.77 -172.32 -0.48 -14.21 16 10 C 0.13 2.61 4.20 -3.71 -0.02 2.60 16 11 C -0.13 -2.06 5.36 -26.62 -0.14 -2.20 16 12 C -0.09 -1.19 2.19 -90.58 -0.20 -1.39 16 13 C 0.13 1.49 5.06 -4.04 -0.02 1.47 16 14 N -0.72 -6.51 5.27 -60.30 -0.32 -6.83 16 15 C 0.50 5.18 7.87 -10.98 -0.09 5.09 16 16 O -0.51 -8.11 15.73 5.56 0.09 -8.02 16 17 C 0.11 0.67 7.03 -5.19 -0.04 0.63 16 18 N -0.37 -3.51 3.41 -63.82 -0.22 -3.73 16 19 C 0.25 2.02 12.63 -90.66 -1.14 0.88 16 20 N -0.55 -5.83 11.19 -15.84 -0.18 -6.01 16 21 C 0.19 2.07 13.03 -91.82 -1.20 0.88 16 22 N -0.29 -3.65 11.80 29.29 0.35 -3.30 16 23 C -0.13 -1.81 5.25 -26.61 -0.14 -1.95 16 24 C 0.15 2.66 6.52 -3.71 -0.02 2.63 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 27 H 0.07 1.70 4.50 -51.92 -0.23 1.47 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.40 2.41 7.65 -40.82 -0.31 2.10 16 34 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.13 0.19 8.09 -51.93 -0.42 -0.23 16 36 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.22 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.55 7.15 -51.93 -0.37 0.18 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -37.71 333.25 -8.30 -46.01 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.96 Total: -1.88 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.25 Total: 1.92 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.07 Total: -60.86 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.71 -8.30 -46.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225356627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.145 kcal (2) G-P(sol) polarization free energy of solvation -37.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds