Wall clock time and date at job start Tue Mar 31 2020 03:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99914 * 2 1 4 4 H 1.48502 * 109.47438 * 272.94491 * 3 2 1 5 5 H 1.48498 * 109.47244 * 32.94818 * 3 2 1 6 6 H 1.48499 * 109.47138 * 152.94623 * 3 2 1 7 7 C 1.38815 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99806 * 339.33917 * 7 2 1 9 9 N 1.36936 * 120.00177 * 159.34159 * 7 2 1 10 10 C 1.46924 * 120.63261 * 332.62802 * 9 7 2 11 11 C 1.53190 * 108.77826 * 233.58782 * 10 9 7 12 12 C 1.53035 * 109.31376 * 305.36804 * 11 10 9 13 13 C 1.53001 * 109.46265 * 181.38595 * 12 11 10 14 14 N 1.46496 * 109.46989 * 174.97126 * 13 12 11 15 15 C 1.34784 * 119.99687 * 180.02562 * 14 13 12 16 16 O 1.21275 * 119.99794 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99872 * 180.02562 * 15 14 13 18 18 N 1.46495 * 109.46955 * 179.97438 * 17 15 14 19 19 C 1.34423 * 126.82420 * 124.99598 * 18 17 15 20 20 N 1.30835 * 108.07763 * 179.97438 * 19 18 17 21 21 C 1.33238 * 109.82957 * 0.02562 * 20 19 18 22 22 N 1.30708 * 108.94611 * 0.26517 * 21 20 19 23 23 C 1.53039 * 109.53065 * 61.36529 * 12 11 10 24 24 C 1.46922 * 120.62714 * 152.60860 * 9 7 2 25 25 H 0.96995 * 120.00204 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.58562 * 113.79770 * 10 9 7 27 27 H 1.09008 * 109.70242 * 353.44704 * 10 9 7 28 28 H 1.08995 * 109.49724 * 185.41474 * 11 10 9 29 29 H 1.09002 * 109.52038 * 65.33006 * 11 10 9 30 30 H 1.09006 * 109.45962 * 301.36102 * 12 11 10 31 31 H 1.08997 * 109.46966 * 54.97067 * 13 12 11 32 32 H 1.08993 * 109.46611 * 294.97061 * 13 12 11 33 33 H 0.97001 * 120.00383 * 359.97438 * 14 13 12 34 34 H 1.08999 * 109.47133 * 59.99392 * 17 15 14 35 35 H 1.09001 * 109.46650 * 299.99395 * 17 15 14 36 36 H 1.07995 * 125.96315 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.52835 * 179.97438 * 21 20 19 38 38 H 1.09006 * 109.49405 * 58.58178 * 23 12 11 39 39 H 1.09001 * 109.50278 * 178.67482 * 23 12 11 40 40 H 1.09003 * 109.59073 * 246.19521 * 24 9 7 41 41 H 1.09001 * 109.59044 * 6.48472 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0825 -1.3982 5 1 1.4802 2.6339 0.7615 6 1 3.5775 1.4230 0.6368 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3291 9 7 3.3137 -1.2400 -0.4189 10 6 3.8173 -0.2583 -1.3891 11 6 4.4622 -1.0077 -2.5593 12 6 5.5289 -1.9642 -2.0216 13 6 6.1992 -2.6892 -3.1903 14 7 7.3000 -3.5142 -2.6864 15 6 8.0390 -4.2476 -3.5424 16 8 7.7924 -4.2249 -4.7296 17 6 9.1710 -5.0967 -3.0240 18 7 9.8129 -5.7908 -4.1430 19 6 11.1168 -5.7606 -4.4686 20 7 11.2881 -6.5090 -5.5280 21 6 10.1220 -7.0308 -5.9062 22 7 9.1873 -6.6153 -5.0925 23 6 4.8750 -2.9898 -1.0928 24 6 4.2351 -2.2629 0.0942 25 1 -0.4850 0.8400 0.0004 26 1 4.5597 0.3805 -0.9107 27 1 2.9922 0.3521 -1.7563 28 1 4.9246 -0.2920 -3.2390 29 1 3.6998 -1.5756 -3.0925 30 1 6.2780 -1.3984 -1.4676 31 1 6.5884 -1.9566 -3.8973 32 1 5.4686 -3.3246 -3.6907 33 1 7.4975 -3.5320 -1.7369 34 1 8.7814 -5.8297 -2.3175 35 1 9.9015 -4.4616 -2.5228 36 1 11.8882 -5.2139 -3.9468 37 1 9.9724 -7.6867 -6.7511 38 1 4.1084 -3.5390 -1.6396 39 1 5.6313 -3.6852 -0.7286 40 1 5.0117 -1.7877 0.6936 41 1 3.6845 -2.9758 0.7081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225356627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:12 Heat of formation + Delta-G solvation = 54.727314 kcal Electronic energy + Delta-G solvation = -23067.126775 eV Core-core repulsion = 19597.784898 eV Total energy + Delta-G solvation = -3469.341877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.97836 -40.83808 -39.53355 -36.54120 -34.98744 -34.52817 -32.91339 -32.14278 -31.87481 -29.73230 -27.94142 -25.53491 -24.34049 -23.31638 -22.87945 -22.68578 -21.55072 -20.81847 -18.84730 -18.46175 -18.25278 -17.25677 -16.90870 -16.66059 -16.15946 -15.90537 -15.71483 -15.39845 -15.17069 -15.10224 -14.83894 -14.59929 -14.42995 -13.98741 -13.83338 -13.52435 -13.39606 -12.95127 -12.73948 -12.53911 -12.24904 -12.11923 -11.74663 -11.58796 -11.42347 -11.23166 -11.20295 -10.99365 -10.76579 -10.68931 -10.49513 -10.12631 -8.91473 -8.16550 -5.47739 0.70790 1.30469 1.34339 1.41075 1.50648 1.52809 2.03810 2.17512 2.42117 3.06053 3.38412 3.54680 3.56585 3.75529 3.78916 3.87264 3.95841 4.11135 4.19393 4.38330 4.43163 4.44450 4.54930 4.63313 4.72439 4.76993 4.89122 5.02081 5.09486 5.17341 5.22192 5.26675 5.28621 5.36282 5.48605 5.60805 5.87792 5.90520 6.12999 6.51151 6.94112 7.13786 7.20789 7.64802 8.04091 9.03621 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048090 B = 0.002634 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.104444 B =10625.980345 C =10702.282630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.041 4.041 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.314 1.314 6 H -0.254 1.254 7 C -0.248 4.248 8 H 0.048 0.952 9 N -0.623 5.623 10 C 0.120 3.880 11 C -0.123 4.123 12 C -0.077 4.077 13 C 0.138 3.862 14 N -0.707 5.707 15 C 0.493 3.507 16 O -0.574 6.574 17 C 0.111 3.889 18 N -0.378 5.378 19 C 0.264 3.736 20 N -0.579 5.579 21 C 0.183 3.817 22 N -0.339 5.339 23 C -0.119 4.119 24 C 0.141 3.859 25 H 0.260 0.740 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.421 0.579 34 H 0.144 0.856 35 H 0.188 0.812 36 H 0.270 0.730 37 H 0.232 0.768 38 H 0.040 0.960 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.521 -8.721 -3.024 28.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.236 4.236 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.243 1.243 6 H -0.178 1.178 7 C -0.378 4.378 8 H 0.065 0.935 9 N -0.348 5.348 10 C -0.005 4.005 11 C -0.162 4.162 12 C -0.096 4.096 13 C 0.013 3.987 14 N -0.361 5.361 15 C 0.279 3.721 16 O -0.452 6.452 17 C -0.013 4.013 18 N -0.169 5.169 19 C -0.031 4.031 20 N -0.306 5.306 21 C -0.120 4.120 22 N -0.167 5.167 23 C -0.157 4.157 24 C 0.017 3.983 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.259 0.741 34 H 0.162 0.838 35 H 0.205 0.795 36 H 0.285 0.715 37 H 0.248 0.752 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 25.725 -8.855 -4.000 27.499 hybrid contribution -0.784 1.007 0.385 1.333 sum 24.941 -7.848 -3.615 26.395 Atomic orbital electron populations 1.69986 1.07609 1.27196 1.55956 1.25977 0.95869 1.01288 1.00443 0.85838 0.78906 0.79828 0.77405 1.20347 1.24333 1.17808 1.18870 0.87164 0.93336 1.38388 0.93451 1.44515 1.07771 1.34894 1.47595 1.21389 0.96707 0.92030 0.90373 1.21896 0.97909 0.98838 0.97574 1.21174 0.96908 0.96164 0.95376 1.21202 0.88044 0.93328 0.96096 1.45774 1.32605 1.45981 1.11710 1.21176 0.84211 0.80332 0.86398 1.90803 1.70546 1.65435 1.18459 1.22018 0.96477 0.97043 0.85797 1.50168 1.07242 1.36256 1.23212 1.27057 0.86859 0.96242 0.92966 1.70524 1.28230 1.16925 1.14961 1.26459 0.85573 0.99741 1.00219 1.78125 1.22774 1.11681 1.04071 1.21971 0.99661 0.97440 0.96678 1.21156 0.92062 0.90379 0.94753 0.93071 0.94180 0.93850 0.90105 0.93457 0.88467 0.91860 0.93644 0.74050 0.83798 0.79468 0.71467 0.75171 0.94092 0.88562 0.93690 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.77 13.97 21.65 0.30 -60.47 16 2 C -0.04 -2.42 5.23 84.86 0.44 -1.97 16 3 Si 0.95 45.82 24.34 68.60 1.67 47.49 16 4 H -0.28 -12.64 6.62 99.48 0.66 -11.98 16 5 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 6 H -0.25 -11.35 6.63 99.48 0.66 -10.69 16 7 C -0.25 -13.89 10.03 84.03 0.84 -13.04 16 8 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 9 N -0.62 -27.75 2.77 -699.09 -1.94 -29.69 16 10 C 0.12 4.73 4.20 86.36 0.36 5.09 16 11 C -0.12 -3.73 5.36 30.67 0.16 -3.56 16 12 C -0.08 -1.74 2.19 -10.77 -0.02 -1.77 16 13 C 0.14 2.88 5.06 86.38 0.44 3.32 16 14 N -0.71 -9.86 5.27 -463.07 -2.44 -12.30 16 15 C 0.49 8.77 7.87 87.66 0.69 9.46 16 16 O -0.57 -17.57 15.73 -3.01 -0.05 -17.62 16 17 C 0.11 0.84 7.03 85.64 0.60 1.44 16 18 N -0.38 -6.08 3.41 -355.81 -1.21 -7.30 16 19 C 0.26 3.33 12.63 180.36 2.28 5.61 16 20 N -0.58 -11.46 11.19 -204.01 -2.28 -13.74 16 21 C 0.18 3.90 13.03 180.77 2.36 6.26 16 22 N -0.34 -8.36 11.80 -61.25 -0.72 -9.08 16 23 C -0.12 -2.96 5.25 30.67 0.16 -2.80 16 24 C 0.14 4.73 6.52 86.36 0.56 5.29 16 25 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.04 1.47 7.07 -2.39 -0.02 1.46 16 27 H 0.04 1.97 4.50 -2.38 -0.01 1.96 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.42 2.59 7.65 -92.71 -0.71 1.88 16 34 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.19 -0.77 8.09 -2.39 -0.02 -0.79 16 36 H 0.27 0.02 8.06 -2.91 -0.02 -0.01 16 37 H 0.23 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.10 1.57 7.15 -2.39 -0.02 1.55 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 Total: -1.00 -89.26 333.25 2.44 -86.81 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 0.24 Total: 2.56 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 8.88 Total: 13.32 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -8.29 Total: -132.57 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -89.26 2.44 -86.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225356627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.542 kcal (2) G-P(sol) polarization free energy of solvation -89.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds