Wall clock time and date at job start Tue Mar 31 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47388 * 300.00446 * 3 2 1 6 6 H 1.48511 * 109.47027 * 60.00474 * 3 2 1 7 7 C 1.38808 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00433 * 163.06076 * 7 2 1 9 9 N 1.36937 * 120.00319 * 343.06947 * 7 2 1 10 10 C 1.46932 * 120.62590 * 331.84484 * 9 7 2 11 11 C 1.53193 * 108.77654 * 233.58718 * 10 9 7 12 12 C 1.53039 * 109.31531 * 305.36796 * 11 10 9 13 13 N 1.46493 * 109.46188 * 181.38416 * 12 11 10 14 14 C 1.34777 * 120.00113 * 154.97080 * 13 12 11 15 15 O 1.21283 * 120.00045 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47054 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47054 * 179.97438 * 17 16 14 19 19 N 1.33238 * 125.52481 * 269.69554 * 18 17 16 20 20 C 1.30831 * 109.82828 * 179.85300 * 19 18 17 21 21 N 1.34428 * 108.07845 * 0.40113 * 20 19 18 22 22 H 0.97002 * 126.82489 * 179.78948 * 21 20 19 23 23 N 1.30716 * 125.52661 * 89.99427 * 18 17 16 24 24 C 1.53039 * 109.52609 * 61.36837 * 12 11 10 25 25 C 1.46924 * 120.63726 * 151.82896 * 9 7 2 26 26 H 0.97004 * 119.99630 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.58549 * 113.79827 * 10 9 7 28 28 H 1.08994 * 109.70387 * 353.45087 * 10 9 7 29 29 H 1.09001 * 109.49742 * 185.41276 * 11 10 9 30 30 H 1.09004 * 109.52088 * 65.33280 * 11 10 9 31 31 H 1.09004 * 109.46014 * 301.36033 * 12 11 10 32 32 H 0.97000 * 119.99755 * 334.97501 * 13 12 11 33 33 H 1.09000 * 109.46909 * 300.00020 * 16 14 13 34 34 H 1.08997 * 109.46849 * 59.99924 * 16 14 13 35 35 H 1.08999 * 109.46596 * 299.99834 * 17 16 14 36 36 H 1.08995 * 109.47046 * 59.99949 * 17 16 14 37 37 H 1.08008 * 125.96178 * 180.11955 * 20 19 18 38 38 H 1.09000 * 109.49810 * 58.58438 * 24 12 11 39 39 H 1.09000 * 109.50082 * 178.67612 * 24 12 11 40 40 H 1.09000 * 109.58484 * 246.20338 * 25 9 7 41 41 H 1.09000 * 109.58066 * 6.47871 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2731 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 7 1.0397 -5.6496 2.9266 14 6 0.8357 -6.9673 2.7302 15 8 0.4641 -7.3686 1.6477 16 6 1.0693 -7.9419 3.8556 17 6 0.7678 -9.3617 3.3715 18 6 1.0020 -10.3364 4.4967 19 7 2.1531 -10.9542 4.7588 20 6 2.0133 -11.7283 5.8042 21 7 0.7435 -11.6246 6.2332 22 1 0.3457 -12.0848 6.9888 23 7 0.1075 -10.7171 5.3705 24 6 2.0675 -4.6178 0.9617 25 6 1.8137 -3.6528 -0.2007 26 1 -0.4850 0.8401 0.0004 27 1 -0.6771 -2.6410 0.7348 28 1 0.0968 -1.3359 1.6677 29 1 -0.3830 -3.3861 3.0511 30 1 1.3471 -2.9699 2.9978 31 1 -0.0281 -5.0417 1.2270 32 1 1.3372 -5.3286 3.7923 33 1 2.1086 -7.8816 4.1786 34 1 0.4143 -7.6957 4.6913 35 1 -0.2714 -9.4222 3.0482 36 1 1.4232 -9.6075 2.5360 37 1 2.7825 -12.3466 6.2431 38 1 2.9023 -4.2543 1.5609 39 1 2.3045 -5.6063 0.5685 40 1 1.0401 -4.0599 -0.8517 41 1 2.7331 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226817777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:49 Heat of formation + Delta-G solvation = 59.758047 kcal Electronic energy + Delta-G solvation = -22829.800870 eV Core-core repulsion = 19360.677142 eV Total energy + Delta-G solvation = -3469.123728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.44522 -39.70623 -37.37303 -34.58717 -34.25299 -32.38581 -32.06622 -30.90188 -30.05732 -29.30796 -25.91815 -24.51810 -23.09010 -22.24407 -21.83096 -20.48637 -20.04056 -19.19850 -18.69526 -17.17379 -16.52493 -15.94590 -15.87616 -15.50812 -15.11031 -14.75148 -14.11153 -13.74237 -13.55350 -13.38434 -13.18586 -12.84005 -12.50400 -12.44907 -12.39224 -12.26751 -11.43783 -11.30746 -11.11020 -10.82732 -10.71767 -10.46658 -10.44769 -10.37891 -10.24089 -10.07136 -10.01089 -9.82199 -9.65437 -9.39957 -8.66749 -8.43959 -6.66257 -5.77887 -3.19999 1.23769 2.29215 2.51971 2.82934 3.36439 3.39796 3.45991 3.48339 3.85025 4.34517 4.51029 4.59246 4.77690 5.02150 5.06290 5.35665 5.38967 5.48996 5.54720 5.62933 5.74162 5.80201 5.88408 5.91991 6.11235 6.12015 6.31277 6.38084 6.56150 6.60371 6.63180 6.63383 6.83333 6.96102 7.02951 7.34084 7.62065 7.72736 7.76552 7.82373 8.44176 8.46602 9.22596 9.85907 10.43076 11.31053 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048153 B = 0.002441 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.334687 B =11469.691888 C =11502.410778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.150 3.850 13 N -0.724 5.724 14 C 0.513 3.487 15 O -0.542 6.542 16 C -0.133 4.133 17 C -0.011 4.011 18 C 0.233 3.767 19 N -0.540 5.540 20 C 0.260 3.740 21 N -0.488 5.488 22 H 0.441 0.559 23 N -0.313 5.313 24 C -0.139 4.139 25 C 0.147 3.853 26 H 0.253 0.747 27 H 0.021 0.979 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.396 0.604 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.223 0.777 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -21.152 15.135 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.374 5.374 14 C 0.298 3.702 15 O -0.419 6.419 16 C -0.175 4.175 17 C -0.052 4.052 18 C -0.049 4.049 19 N -0.268 5.268 20 C -0.039 4.039 21 N -0.206 5.206 22 H 0.287 0.713 23 N -0.142 5.142 24 C -0.179 4.179 25 C 0.020 3.980 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.229 0.771 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.953 -20.966 14.089 25.336 hybrid contribution 0.516 0.462 1.270 1.446 sum 2.469 -20.504 15.359 25.737 Atomic orbital electron populations 1.70040 1.05245 1.25380 1.54131 1.25060 0.95306 0.98437 1.00989 0.86227 0.79362 0.83958 0.77249 1.20268 1.21745 1.21596 1.19237 0.92596 0.84737 1.41408 0.91603 1.44108 1.35829 1.01695 1.49976 1.20738 0.88905 0.97900 0.87705 1.22531 1.00493 0.94822 1.00786 1.21044 0.98518 0.88236 0.87526 1.46343 1.68651 1.06589 1.15828 1.20427 0.77260 0.83182 0.89297 1.90713 1.46351 1.78320 1.26566 1.21575 1.04375 0.93374 0.98134 1.19673 1.04810 0.88598 0.92073 1.24383 0.86592 0.97374 0.96565 1.70470 1.26973 1.13018 1.16334 1.26151 0.87892 0.97488 0.92401 1.48166 1.09685 1.35731 1.26983 0.71345 1.78066 1.20870 1.09435 1.05854 1.22367 0.97145 0.99543 0.98837 1.20878 0.97894 0.86526 0.92682 0.93678 0.96120 0.89066 0.92781 0.92212 0.90013 0.77092 0.88516 0.88862 0.88553 0.88037 0.76117 0.92368 0.92661 0.96176 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.93 2.99 -172.32 -0.52 -15.45 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 12 C 0.15 2.62 2.42 -67.89 -0.16 2.46 16 13 N -0.72 -10.03 5.08 -53.77 -0.27 -10.30 16 14 C 0.51 7.22 7.79 -10.99 -0.09 7.14 16 15 O -0.54 -9.74 15.64 5.55 0.09 -9.65 16 16 C -0.13 -1.38 5.68 -27.88 -0.16 -1.54 16 17 C -0.01 -0.12 5.13 -27.88 -0.14 -0.27 16 18 C 0.23 2.59 7.39 -156.85 -1.16 1.43 16 19 N -0.54 -5.58 11.19 -11.97 -0.13 -5.71 16 20 C 0.26 1.58 13.13 -90.66 -1.19 0.39 16 21 N -0.49 -3.08 7.45 29.53 0.22 -2.86 16 22 H 0.44 1.07 8.96 -182.33 -1.63 -0.56 16 23 N -0.31 -3.33 12.80 32.42 0.41 -2.91 16 24 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 25 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 32 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.22 0.18 8.06 -52.48 -0.42 -0.24 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -35.28 341.03 -10.24 -45.53 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.30 Total: 0.95 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -3.47 Total: 4.24 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.33 Total: -62.82 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.28 -10.24 -45.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226817777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.285 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds