Wall clock time and date at job start Tue Mar 31 2020 03:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47388 * 300.00446 * 3 2 1 6 6 H 1.48511 * 109.47027 * 60.00474 * 3 2 1 7 7 C 1.38808 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00433 * 163.06076 * 7 2 1 9 9 N 1.36937 * 120.00319 * 343.06947 * 7 2 1 10 10 C 1.46932 * 120.62590 * 331.84484 * 9 7 2 11 11 C 1.53193 * 108.77654 * 233.58718 * 10 9 7 12 12 C 1.53039 * 109.31531 * 305.36796 * 11 10 9 13 13 N 1.46493 * 109.46188 * 181.38416 * 12 11 10 14 14 C 1.34777 * 120.00113 * 154.97080 * 13 12 11 15 15 O 1.21283 * 120.00045 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47054 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47054 * 179.97438 * 17 16 14 19 19 N 1.33238 * 125.52481 * 269.69554 * 18 17 16 20 20 C 1.30831 * 109.82828 * 179.85300 * 19 18 17 21 21 N 1.34428 * 108.07845 * 0.40113 * 20 19 18 22 22 H 0.97002 * 126.82489 * 179.78948 * 21 20 19 23 23 N 1.30716 * 125.52661 * 89.99427 * 18 17 16 24 24 C 1.53039 * 109.52609 * 61.36837 * 12 11 10 25 25 C 1.46924 * 120.63726 * 151.82896 * 9 7 2 26 26 H 0.97004 * 119.99630 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.58549 * 113.79827 * 10 9 7 28 28 H 1.08994 * 109.70387 * 353.45087 * 10 9 7 29 29 H 1.09001 * 109.49742 * 185.41276 * 11 10 9 30 30 H 1.09004 * 109.52088 * 65.33280 * 11 10 9 31 31 H 1.09004 * 109.46014 * 301.36033 * 12 11 10 32 32 H 0.97000 * 119.99755 * 334.97501 * 13 12 11 33 33 H 1.09000 * 109.46909 * 300.00020 * 16 14 13 34 34 H 1.08997 * 109.46849 * 59.99924 * 16 14 13 35 35 H 1.08999 * 109.46596 * 299.99834 * 17 16 14 36 36 H 1.08995 * 109.47046 * 59.99949 * 17 16 14 37 37 H 1.08008 * 125.96178 * 180.11955 * 20 19 18 38 38 H 1.09000 * 109.49810 * 58.58438 * 24 12 11 39 39 H 1.09000 * 109.50082 * 178.67612 * 24 12 11 40 40 H 1.09000 * 109.58484 * 246.20338 * 25 9 7 41 41 H 1.09000 * 109.58066 * 6.47871 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2731 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 7 1.0397 -5.6496 2.9266 14 6 0.8357 -6.9673 2.7302 15 8 0.4641 -7.3686 1.6477 16 6 1.0693 -7.9419 3.8556 17 6 0.7678 -9.3617 3.3715 18 6 1.0020 -10.3364 4.4967 19 7 2.1531 -10.9542 4.7588 20 6 2.0133 -11.7283 5.8042 21 7 0.7435 -11.6246 6.2332 22 1 0.3457 -12.0848 6.9888 23 7 0.1075 -10.7171 5.3705 24 6 2.0675 -4.6178 0.9617 25 6 1.8137 -3.6528 -0.2007 26 1 -0.4850 0.8401 0.0004 27 1 -0.6771 -2.6410 0.7348 28 1 0.0968 -1.3359 1.6677 29 1 -0.3830 -3.3861 3.0511 30 1 1.3471 -2.9699 2.9978 31 1 -0.0281 -5.0417 1.2270 32 1 1.3372 -5.3286 3.7923 33 1 2.1086 -7.8816 4.1786 34 1 0.4143 -7.6957 4.6913 35 1 -0.2714 -9.4222 3.0482 36 1 1.4232 -9.6075 2.5360 37 1 2.7825 -12.3466 6.2431 38 1 2.9023 -4.2543 1.5609 39 1 2.3045 -5.6063 0.5685 40 1 1.0401 -4.0599 -0.8517 41 1 2.7331 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226817777.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:48 Heat of formation + Delta-G solvation = 35.311465 kcal Electronic energy + Delta-G solvation = -22830.860954 eV Core-core repulsion = 19360.677142 eV Total energy + Delta-G solvation = -3470.183811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05286 -40.95828 -38.98886 -36.03178 -35.21617 -33.91994 -32.96830 -31.96145 -31.57874 -30.91940 -27.33193 -25.98864 -23.95018 -23.69889 -23.39076 -21.44754 -21.13824 -20.75860 -19.22953 -18.86327 -17.87329 -17.21005 -16.79885 -16.65656 -16.31482 -15.88237 -15.61971 -15.34663 -15.01746 -14.76663 -14.65535 -14.17958 -13.91363 -13.81490 -13.24057 -13.17344 -13.08435 -13.00442 -12.62051 -12.50682 -12.21086 -12.14563 -11.98170 -11.85943 -11.53928 -11.33770 -11.10127 -11.03714 -10.87792 -10.60304 -10.56127 -9.95979 -8.70307 -7.87391 -5.33235 0.66664 1.48045 1.49812 1.60784 1.70300 1.80919 1.88311 2.29603 2.52420 3.22311 3.28958 3.65630 3.69406 3.81839 3.93032 4.05357 4.14594 4.23046 4.35360 4.36385 4.48059 4.59849 4.66724 4.83468 4.88043 4.93782 5.01001 5.06393 5.08263 5.17287 5.26987 5.31563 5.38784 5.48196 5.60201 5.65471 5.72031 6.29115 6.39507 6.65304 7.13087 7.14886 7.33873 7.84455 8.37506 9.19861 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048153 B = 0.002441 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.334687 B =11469.691888 C =11502.410778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.610 5.610 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.161 3.839 13 N -0.712 5.712 14 C 0.513 3.487 15 O -0.584 6.584 16 C -0.116 4.116 17 C -0.008 4.008 18 C 0.222 3.778 19 N -0.579 5.579 20 C 0.277 3.723 21 N -0.476 5.476 22 H 0.458 0.542 23 N -0.345 5.345 24 C -0.123 4.123 25 C 0.144 3.856 26 H 0.251 0.749 27 H -0.007 1.007 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.414 0.586 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.273 0.727 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.006 0.994 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 -22.459 17.682 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.056 3.944 13 N -0.363 5.363 14 C 0.301 3.699 15 O -0.464 6.464 16 C -0.156 4.156 17 C -0.049 4.049 18 C -0.061 4.061 19 N -0.308 5.308 20 C -0.021 4.021 21 N -0.196 5.196 22 H 0.307 0.693 23 N -0.175 5.175 24 C -0.164 4.164 25 C 0.018 3.982 26 H 0.060 0.940 27 H 0.011 0.989 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.289 0.711 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.608 -22.313 16.700 28.103 hybrid contribution -0.006 0.745 0.473 0.883 sum 3.602 -21.567 17.173 27.803 Atomic orbital electron populations 1.70197 1.06716 1.25874 1.55457 1.25838 0.96073 1.01598 1.01186 0.85177 0.78614 0.79672 0.76776 1.19038 1.22160 1.21386 1.19555 0.92868 0.85810 1.40924 0.91469 1.44368 1.35961 1.02243 1.50757 1.20567 0.87691 0.97775 0.88816 1.22249 1.01948 0.93755 0.98834 1.20635 0.97140 0.88444 0.88200 1.46063 1.68518 1.06081 1.15659 1.21054 0.75922 0.83344 0.89589 1.90705 1.48121 1.78942 1.28604 1.21474 1.05853 0.91599 0.96724 1.19526 1.03763 0.89378 0.92185 1.24220 0.87225 0.97893 0.96732 1.70438 1.27206 1.14667 1.18509 1.27080 0.88313 0.96000 0.90713 1.48098 1.09805 1.34835 1.26826 0.69306 1.77960 1.21887 1.10901 1.06761 1.22163 0.97823 0.98646 0.97718 1.20975 0.97325 0.85984 0.93957 0.94031 0.98856 0.91892 0.90537 0.91091 0.92496 0.74919 0.86661 0.86966 0.89755 0.89281 0.71142 0.91457 0.92092 0.97573 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.66 11.19 21.65 0.24 -55.42 16 2 C -0.05 -2.90 4.92 84.86 0.42 -2.48 16 3 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.26 -14.47 9.58 84.03 0.81 -13.67 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -31.15 2.99 -699.09 -2.09 -33.25 16 10 C 0.18 8.58 5.30 86.36 0.46 9.04 16 11 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 12 C 0.16 5.47 2.42 45.02 0.11 5.58 16 13 N -0.71 -18.25 5.08 -442.42 -2.25 -20.50 16 14 C 0.51 13.78 7.79 87.66 0.68 14.46 16 15 O -0.58 -20.96 15.64 -3.04 -0.05 -21.01 16 16 C -0.12 -2.18 5.68 29.85 0.17 -2.01 16 17 C -0.01 -0.18 5.13 29.85 0.15 -0.02 16 18 C 0.22 4.66 7.39 138.63 1.03 5.68 16 19 N -0.58 -10.82 11.19 -191.80 -2.15 -12.97 16 20 C 0.28 2.48 13.13 180.36 2.37 4.85 16 21 N -0.48 -4.78 7.45 -60.49 -0.45 -5.23 16 22 H 0.46 0.94 8.96 -213.09 -1.91 -0.97 16 23 N -0.34 -6.82 12.80 -51.33 -0.66 -7.48 16 24 C -0.12 -4.45 5.65 30.67 0.17 -4.27 16 25 C 0.14 6.32 6.52 86.36 0.56 6.89 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.06 2.26 7.58 -2.38 -0.02 2.25 16 32 H 0.41 7.80 8.60 -92.71 -0.80 7.00 16 33 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 36 H 0.09 2.11 8.10 -2.39 -0.02 2.09 16 37 H 0.27 -0.85 8.06 -2.91 -0.02 -0.87 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -78.72 341.03 0.08 -78.64 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -1.65 Total: 10.75 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 7.09 Total: 19.65 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -7.35 Total: -134.84 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.01 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.72 0.08 -78.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226817777.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.950 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds