Wall clock time and date at job start Tue Mar 31 2020 03:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47388 * 300.00446 * 3 2 1 6 6 H 1.48511 * 109.47027 * 60.00474 * 3 2 1 7 7 C 1.38808 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00433 * 163.06076 * 7 2 1 9 9 N 1.36937 * 120.00319 * 343.06947 * 7 2 1 10 10 C 1.46932 * 120.62590 * 331.84484 * 9 7 2 11 11 C 1.53193 * 108.77654 * 233.58718 * 10 9 7 12 12 C 1.53039 * 109.31531 * 305.36796 * 11 10 9 13 13 N 1.46493 * 109.46188 * 181.38416 * 12 11 10 14 14 C 1.34777 * 120.00113 * 154.97080 * 13 12 11 15 15 O 1.21283 * 120.00045 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47054 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47054 * 179.97438 * 17 16 14 19 19 C 1.35354 * 126.91197 * 274.68758 * 18 17 16 20 20 N 1.33768 * 106.49498 * 179.90600 * 19 18 17 21 21 N 1.28639 * 108.88799 * 0.36129 * 20 19 18 22 22 N 1.28716 * 110.17504 * 359.76967 * 21 20 19 23 23 H 0.96995 * 125.86702 * 180.02562 * 22 21 20 24 24 C 1.53039 * 109.52609 * 61.36837 * 12 11 10 25 25 C 1.46924 * 120.63726 * 151.82896 * 9 7 2 26 26 H 0.97004 * 119.99630 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.58505 * 113.80351 * 10 9 7 28 28 H 1.08994 * 109.70387 * 353.45087 * 10 9 7 29 29 H 1.09001 * 109.49742 * 185.41276 * 11 10 9 30 30 H 1.09004 * 109.52088 * 65.33280 * 11 10 9 31 31 H 1.09004 * 109.46014 * 301.36033 * 12 11 10 32 32 H 0.97000 * 119.99755 * 334.97501 * 13 12 11 33 33 H 1.09000 * 109.46909 * 300.00020 * 16 14 13 34 34 H 1.08997 * 109.46849 * 59.99924 * 16 14 13 35 35 H 1.08999 * 109.46596 * 299.99834 * 17 16 14 36 36 H 1.08995 * 109.47046 * 59.99949 * 17 16 14 37 37 H 1.08007 * 126.74700 * 0.03312 * 19 18 17 38 38 H 1.09000 * 109.49810 * 58.58438 * 24 12 11 39 39 H 1.09000 * 109.50082 * 178.67612 * 24 12 11 40 40 H 1.09000 * 109.58484 * 246.20338 * 25 9 7 41 41 H 1.09000 * 109.58066 * 6.47871 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2731 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 7 1.0397 -5.6496 2.9266 14 6 0.8357 -6.9673 2.7302 15 8 0.4641 -7.3686 1.6477 16 6 1.0693 -7.9419 3.8556 17 6 0.7678 -9.3617 3.3715 18 6 1.0020 -10.3364 4.4967 19 6 2.1785 -10.9075 4.8459 20 7 1.9210 -11.6972 5.8944 21 7 0.6667 -11.6262 6.1711 22 7 0.0775 -10.8212 5.3576 23 1 -0.8668 -10.5999 5.3613 24 6 2.0675 -4.6178 0.9617 25 6 1.8137 -3.6528 -0.2007 26 1 -0.4850 0.8401 0.0004 27 1 -0.6771 -2.6411 0.7348 28 1 0.0968 -1.3359 1.6677 29 1 -0.3830 -3.3861 3.0511 30 1 1.3471 -2.9699 2.9978 31 1 -0.0281 -5.0417 1.2270 32 1 1.3372 -5.3286 3.7923 33 1 2.1086 -7.8816 4.1786 34 1 0.4143 -7.6957 4.6913 35 1 -0.2714 -9.4222 3.0482 36 1 1.4232 -9.6075 2.5360 37 1 3.1370 -10.7539 4.3724 38 1 2.9023 -4.2543 1.5609 39 1 2.3045 -5.6063 0.5685 40 1 1.0401 -4.0599 -0.8517 41 1 2.7331 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229262005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:01 Heat of formation + Delta-G solvation = 64.713376 kcal Electronic energy + Delta-G solvation = -22892.480977 eV Core-core repulsion = 19423.572128 eV Total energy + Delta-G solvation = -3468.908849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.65184 -39.89749 -37.50389 -34.85043 -34.43554 -33.50338 -32.23080 -30.58067 -30.05276 -29.28195 -25.83459 -24.56384 -23.31442 -22.40313 -22.18393 -21.64842 -20.25673 -19.31603 -18.61383 -17.31167 -16.64819 -16.40573 -15.91140 -15.72314 -14.85025 -14.71198 -14.50490 -13.90956 -13.77381 -13.61132 -13.46171 -12.99109 -12.72583 -12.65181 -12.39117 -12.08603 -11.69038 -11.52352 -11.18758 -11.17098 -10.93969 -10.92519 -10.77632 -10.54002 -10.33416 -10.09324 -9.99059 -9.79388 -9.62717 -9.42170 -8.80974 -8.51202 -6.73634 -5.84405 -3.26800 1.16788 2.19795 2.36201 2.62803 3.22489 3.33687 3.41775 3.43819 4.08728 4.30135 4.45356 4.49874 4.58753 4.85550 4.87803 5.07142 5.14558 5.28094 5.37617 5.44324 5.51552 5.56804 5.58622 5.78335 5.80086 6.00987 6.19784 6.26040 6.44677 6.46031 6.48437 6.52109 6.73903 6.82846 6.93399 7.25414 7.51908 7.62361 7.75641 8.08687 8.25903 8.39720 9.15896 9.78982 10.35745 11.24574 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048110 B = 0.002446 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.856728 B =11444.493290 C =11474.862733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.723 5.723 14 C 0.509 3.491 15 O -0.543 6.543 16 C -0.138 4.138 17 C -0.033 4.033 18 C -0.005 4.005 19 C -0.047 4.047 20 N -0.266 5.266 21 N -0.085 5.085 22 N -0.390 5.390 23 H 0.448 0.552 24 C -0.138 4.138 25 C 0.147 3.853 26 H 0.254 0.746 27 H 0.021 0.979 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.396 0.604 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.192 0.808 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -16.458 10.135 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.373 5.373 14 C 0.295 3.705 15 O -0.420 6.420 16 C -0.179 4.179 17 C -0.073 4.073 18 C -0.139 4.139 19 C -0.204 4.204 20 N -0.133 5.133 21 N -0.065 5.065 22 N -0.111 5.111 23 H 0.293 0.707 24 C -0.179 4.179 25 C 0.020 3.980 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.230 0.770 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.209 0.791 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.047 -17.586 10.558 20.512 hybrid contribution 0.052 1.934 -0.413 1.979 sum 0.099 -15.651 10.145 18.652 Atomic orbital electron populations 1.70035 1.05268 1.25457 1.54018 1.25063 0.95309 0.98479 1.00866 0.86225 0.79373 0.83887 0.77295 1.20242 1.21698 1.21558 1.19232 0.92615 0.84706 1.41583 0.91572 1.44102 1.35818 1.01698 1.49950 1.20739 0.88916 0.97927 0.87681 1.22537 1.00504 0.94779 1.00834 1.21066 0.98563 0.88258 0.87462 1.46374 1.68373 1.06600 1.15915 1.20449 0.77462 0.83268 0.89323 1.90725 1.46437 1.78319 1.26553 1.21680 1.04683 0.93486 0.98059 1.19889 1.04970 0.89412 0.93031 1.22385 0.90066 1.03294 0.98155 1.23483 0.99415 0.99511 0.97962 1.75114 1.05576 1.18918 1.13737 1.78308 1.02397 1.11049 1.14735 1.45165 1.12717 1.31115 1.22065 0.70666 1.22366 0.97094 0.99538 0.98867 1.20876 0.97941 0.86549 0.92637 0.93632 0.96130 0.89018 0.92808 0.92159 0.90021 0.77020 0.88211 0.89070 0.89405 0.87640 0.79105 0.92322 0.92717 0.96201 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.19 55.49 0.62 -24.99 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 8 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.40 2.99 -172.32 -0.52 -14.91 16 10 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 11 C -0.15 -2.52 5.55 -26.61 -0.15 -2.67 16 12 C 0.15 2.40 2.42 -67.89 -0.16 2.23 16 13 N -0.72 -8.61 5.08 -53.77 -0.27 -8.89 16 14 C 0.51 5.87 7.79 -10.99 -0.09 5.78 16 15 O -0.54 -8.44 15.64 5.55 0.09 -8.35 16 16 C -0.14 -0.94 5.68 -27.88 -0.16 -1.10 16 17 C -0.03 -0.22 5.07 -27.88 -0.14 -0.36 16 18 C 0.00 -0.04 6.56 -82.09 -0.54 -0.57 16 19 C -0.05 -0.39 11.99 -17.74 -0.21 -0.61 16 20 N -0.27 -3.02 12.41 30.24 0.38 -2.64 16 21 N -0.08 -0.88 13.38 60.35 0.81 -0.08 16 22 N -0.39 -2.73 6.98 33.54 0.23 -2.49 16 23 H 0.45 1.57 8.96 -190.41 -1.71 -0.14 16 24 C -0.14 -2.37 5.65 -26.61 -0.15 -2.52 16 25 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 26 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 32 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.11 0.75 8.10 -51.93 -0.42 0.32 16 37 H 0.19 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -33.45 340.34 -7.81 -41.26 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.37 Total: -0.38 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.87 Total: 0.20 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 1.25 Total: -54.00 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.45 -7.81 -41.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229262005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.978 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds