Wall clock time and date at job start Tue Mar 31 2020 03:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00224 * 2 1 4 4 H 1.48507 * 109.47529 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47388 * 300.00446 * 3 2 1 6 6 H 1.48511 * 109.47027 * 60.00474 * 3 2 1 7 7 C 1.38808 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00433 * 163.06076 * 7 2 1 9 9 N 1.36937 * 120.00319 * 343.06947 * 7 2 1 10 10 C 1.46932 * 120.62590 * 331.84484 * 9 7 2 11 11 C 1.53193 * 108.77654 * 233.58718 * 10 9 7 12 12 C 1.53039 * 109.31531 * 305.36796 * 11 10 9 13 13 N 1.46493 * 109.46188 * 181.38416 * 12 11 10 14 14 C 1.34777 * 120.00113 * 154.97080 * 13 12 11 15 15 O 1.21283 * 120.00045 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47054 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47054 * 179.97438 * 17 16 14 19 19 C 1.35354 * 126.91197 * 274.68758 * 18 17 16 20 20 N 1.33768 * 106.49498 * 179.90600 * 19 18 17 21 21 N 1.28639 * 108.88799 * 0.36129 * 20 19 18 22 22 N 1.28716 * 110.17504 * 359.76967 * 21 20 19 23 23 H 0.96995 * 125.86702 * 180.02562 * 22 21 20 24 24 C 1.53039 * 109.52609 * 61.36837 * 12 11 10 25 25 C 1.46924 * 120.63726 * 151.82896 * 9 7 2 26 26 H 0.97004 * 119.99630 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.58505 * 113.80351 * 10 9 7 28 28 H 1.08994 * 109.70387 * 353.45087 * 10 9 7 29 29 H 1.09001 * 109.49742 * 185.41276 * 11 10 9 30 30 H 1.09004 * 109.52088 * 65.33280 * 11 10 9 31 31 H 1.09004 * 109.46014 * 301.36033 * 12 11 10 32 32 H 0.97000 * 119.99755 * 334.97501 * 13 12 11 33 33 H 1.09000 * 109.46909 * 300.00020 * 16 14 13 34 34 H 1.08997 * 109.46849 * 59.99924 * 16 14 13 35 35 H 1.08999 * 109.46596 * 299.99834 * 17 16 14 36 36 H 1.08995 * 109.47046 * 59.99949 * 17 16 14 37 37 H 1.08007 * 126.74700 * 0.03312 * 19 18 17 38 38 H 1.09000 * 109.49810 * 58.58438 * 24 12 11 39 39 H 1.09000 * 109.50082 * 178.67612 * 24 12 11 40 40 H 1.09000 * 109.58484 * 246.20338 * 25 9 7 41 41 H 1.09000 * 109.58066 * 6.47871 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2731 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4975 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 7 1.0397 -5.6496 2.9266 14 6 0.8357 -6.9673 2.7302 15 8 0.4641 -7.3686 1.6477 16 6 1.0693 -7.9419 3.8556 17 6 0.7678 -9.3617 3.3715 18 6 1.0020 -10.3364 4.4967 19 6 2.1785 -10.9075 4.8459 20 7 1.9210 -11.6972 5.8944 21 7 0.6667 -11.6262 6.1711 22 7 0.0775 -10.8212 5.3576 23 1 -0.8668 -10.5999 5.3613 24 6 2.0675 -4.6178 0.9617 25 6 1.8137 -3.6528 -0.2007 26 1 -0.4850 0.8401 0.0004 27 1 -0.6771 -2.6411 0.7348 28 1 0.0968 -1.3359 1.6677 29 1 -0.3830 -3.3861 3.0511 30 1 1.3471 -2.9699 2.9978 31 1 -0.0281 -5.0417 1.2270 32 1 1.3372 -5.3286 3.7923 33 1 2.1086 -7.8816 4.1786 34 1 0.4143 -7.6957 4.6913 35 1 -0.2714 -9.4222 3.0482 36 1 1.4232 -9.6075 2.5360 37 1 3.1370 -10.7539 4.3724 38 1 2.9023 -4.2543 1.5609 39 1 2.3045 -5.6063 0.5685 40 1 1.0401 -4.0599 -0.8517 41 1 2.7331 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229262005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:00 Heat of formation + Delta-G solvation = 40.172592 kcal Electronic energy + Delta-G solvation = -22893.545145 eV Core-core repulsion = 19423.572128 eV Total energy + Delta-G solvation = -3469.973017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.27911 -40.94392 -38.98844 -36.04511 -35.36624 -34.15076 -33.88620 -31.89920 -31.42418 -30.53758 -27.19251 -25.79297 -24.00748 -23.91154 -23.52431 -22.51629 -21.29683 -20.81162 -19.21813 -18.85883 -17.84916 -17.24702 -16.95319 -16.71961 -16.49648 -15.66578 -15.35680 -15.33428 -15.16829 -14.83050 -14.72590 -14.31274 -14.04680 -13.94064 -13.29875 -13.17517 -13.01151 -12.72596 -12.62786 -12.50914 -12.28635 -12.19969 -11.98791 -11.86097 -11.77760 -11.58143 -11.53660 -11.33437 -10.83047 -10.56774 -10.13278 -9.94320 -8.70698 -7.88378 -5.33960 0.56887 1.47271 1.49604 1.54494 1.59979 1.73721 1.86809 2.30306 2.51647 3.27615 3.47893 3.66499 3.71702 3.88781 3.94135 4.05433 4.06898 4.23229 4.34241 4.36344 4.48027 4.51774 4.66095 4.66796 4.83690 4.88440 5.04044 5.06480 5.07451 5.10029 5.17406 5.23177 5.32088 5.48353 5.61381 5.65032 5.72051 5.99469 6.38866 6.68116 7.14455 7.37024 7.44212 7.84284 8.36524 9.18695 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048110 B = 0.002446 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.856728 B =11444.493290 C =11474.862733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.177 3.823 11 C -0.129 4.129 12 C 0.162 3.838 13 N -0.714 5.714 14 C 0.510 3.490 15 O -0.585 6.585 16 C -0.125 4.125 17 C -0.026 4.026 18 C 0.010 3.990 19 C -0.054 4.054 20 N -0.304 5.304 21 N -0.113 5.113 22 N -0.375 5.375 23 H 0.462 0.538 24 C -0.123 4.123 25 C 0.143 3.857 26 H 0.250 0.750 27 H -0.007 1.007 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.414 0.586 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.214 0.786 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.006 0.994 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -17.101 11.620 20.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.051 3.949 11 C -0.168 4.168 12 C 0.056 3.944 13 N -0.365 5.365 14 C 0.298 3.702 15 O -0.465 6.465 16 C -0.166 4.166 17 C -0.066 4.066 18 C -0.125 4.125 19 C -0.212 4.212 20 N -0.170 5.170 21 N -0.093 5.093 22 N -0.098 5.098 23 H 0.310 0.690 24 C -0.163 4.163 25 C 0.017 3.983 26 H 0.060 0.940 27 H 0.011 0.989 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.112 -18.265 12.098 21.937 hybrid contribution -0.316 2.102 -0.972 2.337 sum 0.796 -16.163 11.126 19.639 Atomic orbital electron populations 1.70189 1.06684 1.25855 1.55488 1.25813 0.96051 1.01537 1.01219 0.85205 0.78650 0.79791 0.76761 1.19047 1.22212 1.21434 1.19548 0.92860 0.85841 1.40876 0.91495 1.44368 1.35961 1.02250 1.50775 1.20570 0.87672 0.97808 0.88873 1.22243 1.01904 0.93937 0.98744 1.20597 0.97063 0.88423 0.88269 1.46100 1.68507 1.06329 1.15541 1.21219 0.75912 0.83269 0.89839 1.90723 1.48175 1.78889 1.28732 1.21654 1.06685 0.91720 0.96493 1.19824 1.05064 0.89144 0.92555 1.22374 0.89600 1.02797 0.97727 1.23959 1.00868 0.98977 0.97366 1.75084 1.06174 1.20414 1.15312 1.78257 1.02537 1.12456 1.16003 1.45195 1.13493 1.29962 1.21154 0.68958 1.22155 0.97857 0.98650 0.97626 1.20986 0.97277 0.86003 0.94072 0.94048 0.98870 0.92061 0.90534 0.91208 0.92453 0.74924 0.85920 0.86631 0.89300 0.87878 0.76977 0.91544 0.91855 0.97576 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.44 11.19 21.65 0.24 -54.20 16 2 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 3 Si 0.97 43.82 29.59 68.60 2.03 45.85 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.26 -14.06 9.58 84.03 0.81 -13.26 16 8 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -29.97 2.99 -699.09 -2.09 -32.07 16 10 C 0.18 8.18 5.30 86.36 0.46 8.63 16 11 C -0.13 -4.24 5.55 30.67 0.17 -4.07 16 12 C 0.16 4.91 2.42 45.02 0.11 5.02 16 13 N -0.71 -14.74 5.08 -442.42 -2.25 -16.99 16 14 C 0.51 10.19 7.79 87.66 0.68 10.87 16 15 O -0.58 -17.14 15.64 -3.04 -0.05 -17.19 16 16 C -0.13 -1.19 5.68 29.85 0.17 -1.02 16 17 C -0.03 -0.26 5.07 29.85 0.15 -0.11 16 18 C 0.01 0.12 6.56 41.36 0.27 0.39 16 19 C -0.05 -0.79 11.99 83.73 1.00 0.22 16 20 N -0.30 -6.50 12.41 -58.25 -0.72 -7.23 16 21 N -0.11 -2.21 13.38 37.02 0.50 -1.71 16 22 N -0.37 -4.42 6.98 -47.79 -0.33 -4.76 16 23 H 0.46 2.16 8.96 -219.96 -1.97 0.19 16 24 C -0.12 -4.03 5.65 30.67 0.17 -3.85 16 25 C 0.14 5.94 6.52 86.36 0.56 6.50 16 26 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16 27 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 28 H 0.06 3.19 6.06 -2.39 -0.01 3.18 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.06 2.07 7.58 -2.38 -0.02 2.05 16 32 H 0.41 5.88 8.60 -92.71 -0.80 5.08 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 37 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.26 16 41 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 Total: -1.00 -74.54 340.34 0.59 -73.95 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -1.71 Total: 7.39 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 4.97 Total: 6.95 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -4.66 Total: -116.95 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.05 Total: -17.19 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.54 0.59 -73.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229262005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.120 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds