Wall clock time and date at job start Tue Mar 31 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47201 * 118.55975 * 3 2 1 5 5 C 1.34777 * 120.00241 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99473 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99939 * 179.97438 * 5 4 3 8 8 C 1.50697 * 109.46839 * 179.97438 * 7 5 4 9 9 O 1.21284 * 120.00027 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99988 * 179.97438 * 8 7 5 11 11 C 1.46494 * 120.00000 * 0.02562 * 10 8 7 12 12 C 1.46500 * 120.00086 * 180.02562 * 10 8 7 13 13 C 1.52998 * 109.47297 * 95.36561 * 12 10 8 14 14 H 1.09007 * 112.73795 * 44.42308 * 13 12 10 15 15 C 1.53496 * 113.46945 * 273.68619 * 13 12 10 16 16 C 1.53613 * 83.30693 * 219.16558 * 15 13 12 17 17 N 1.47063 * 113.47059 * 175.17093 * 13 12 10 18 18 C 1.36938 * 136.05696 * 321.93384 * 17 13 12 19 19 H 1.07994 * 120.00004 * 358.21257 * 18 17 13 20 20 C 1.38810 * 120.00017 * 178.21324 * 18 17 13 21 21 N 1.31621 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47508 * 59.99778 * 22 20 18 24 24 H 1.48502 * 109.47362 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.46914 * 299.99813 * 22 20 18 26 26 H 4.40643 * 5.51492 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47067 * 238.55436 * 3 2 1 28 28 H 1.08996 * 109.47312 * 358.56141 * 3 2 1 29 29 H 0.97001 * 119.99658 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.46828 * 299.99698 * 7 5 4 31 31 H 1.08996 * 109.46996 * 60.00062 * 7 5 4 32 32 H 1.09005 * 109.47610 * 84.79647 * 11 10 8 33 33 H 1.08996 * 109.47328 * 204.79679 * 11 10 8 34 34 H 1.08996 * 109.47017 * 324.79788 * 11 10 8 35 35 H 1.09001 * 109.47242 * 215.36424 * 12 10 8 36 36 H 1.09008 * 109.47388 * 335.36632 * 12 10 8 37 37 H 1.09008 * 114.20232 * 332.73434 * 15 13 12 38 38 H 1.08994 * 114.21442 * 105.55721 * 15 13 12 39 39 H 1.08998 * 113.41592 * 271.24305 * 16 15 13 40 40 H 1.09001 * 113.56231 * 140.82031 * 16 15 13 41 41 H 0.96993 * 120.00692 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.6612 -1.2132 5 6 4.4591 0.7800 -1.4293 6 8 5.2473 0.3405 -0.6191 7 6 4.9610 1.4590 -2.6775 8 6 6.4680 1.4609 -2.6768 9 8 7.0746 0.9598 -1.7538 10 7 7.1416 2.0185 -3.7023 11 6 6.4089 2.6233 -4.8174 12 6 8.6066 2.0199 -3.7020 13 6 9.1180 0.8227 -4.5057 14 1 8.5819 0.6858 -5.4449 15 6 9.2374 -0.4639 -3.6771 16 6 10.5208 -0.6600 -4.4982 17 7 10.5806 0.8008 -4.6577 18 6 11.5650 1.7313 -4.8586 19 1 11.3077 2.7742 -4.9697 20 6 12.8936 1.3340 -4.9193 21 7 13.2073 0.0628 -4.7843 22 14 14.2366 2.6033 -5.1926 23 1 14.2096 3.5978 -4.0901 24 1 15.5587 1.9276 -5.2181 25 1 14.0090 3.2937 -6.4877 26 1 -1.0501 0.0001 0.0002 27 1 3.0091 0.5369 0.8767 28 1 3.0098 -1.0265 0.0258 29 1 2.5035 1.0131 -1.8609 30 1 4.5984 0.9220 -3.5540 31 1 4.5968 2.4859 -2.7040 32 1 6.1455 3.6504 -4.5647 33 1 7.0354 2.6179 -5.7093 34 1 5.5006 2.0517 -5.0079 35 1 8.9693 2.9428 -4.1545 36 1 8.9699 1.9508 -2.6765 37 1 9.4084 -0.2962 -2.6137 38 1 8.4596 -1.2000 -3.8798 39 1 10.3584 -1.1926 -5.4352 40 1 11.3500 -1.0677 -3.9199 41 1 14.1356 -0.2148 -4.8264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233810444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:06 Heat of formation + Delta-G solvation = 30.677215 kcal Electronic energy + Delta-G solvation = -23098.330398 eV Core-core repulsion = 19595.652879 eV Total energy + Delta-G solvation = -3502.677519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.43034 -40.31282 -39.31877 -36.57745 -36.14142 -34.27518 -33.63076 -32.03797 -29.93319 -29.57623 -27.78536 -27.01679 -25.39989 -23.99385 -21.85872 -21.02553 -20.33375 -19.32491 -18.75446 -18.34595 -17.42905 -17.23946 -16.99778 -16.75058 -16.42475 -16.14344 -15.78835 -15.40816 -14.74940 -14.62347 -14.56069 -14.19052 -13.89318 -13.76494 -13.71012 -13.43537 -13.07187 -12.94810 -12.84158 -12.62449 -12.47596 -12.26300 -11.79066 -11.76554 -11.68821 -11.43598 -11.20519 -10.99863 -10.82955 -10.38879 -10.08852 -9.49108 -8.90371 -7.87865 -5.22674 1.39335 1.44880 1.49847 1.55424 1.65635 1.81209 1.86595 2.03814 2.48313 2.65409 3.31768 3.38430 3.41154 3.55995 3.87648 3.95450 4.24113 4.31571 4.38529 4.40977 4.44850 4.51397 4.53480 4.62770 4.70001 4.85617 4.89982 5.01336 5.02533 5.05927 5.10683 5.23232 5.35439 5.50269 5.55742 5.76522 5.94426 6.51052 6.58875 6.61459 6.90225 7.27224 7.44289 7.61621 8.62966 9.29844 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037121 B = 0.002811 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.111784 B = 9959.159574 C =10245.815277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.246 4.246 3 C 0.231 3.769 4 N -0.716 5.716 5 C 0.508 3.492 6 O -0.552 6.552 7 C -0.146 4.146 8 C 0.497 3.503 9 O -0.552 6.552 10 N -0.612 5.612 11 C 0.069 3.931 12 C 0.131 3.869 13 C 0.141 3.859 14 H 0.061 0.939 15 C -0.135 4.135 16 C 0.146 3.854 17 N -0.631 5.631 18 C -0.222 4.222 19 H 0.091 0.909 20 C -0.076 4.076 21 N -0.958 5.958 22 Si 0.983 3.017 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.272 1.272 26 H 0.255 0.745 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.419 0.581 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.035 0.965 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.165 5.317 1.066 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.247 4.247 3 C 0.108 3.892 4 N -0.372 5.372 5 C 0.294 3.706 6 O -0.428 6.428 7 C -0.188 4.188 8 C 0.285 3.715 9 O -0.428 6.428 10 N -0.347 5.347 11 C -0.073 4.073 12 C 0.006 3.994 13 C 0.034 3.966 14 H 0.079 0.921 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.357 5.357 18 C -0.350 4.350 19 H 0.109 0.891 20 C -0.268 4.268 21 N -0.607 5.607 22 Si 0.811 3.189 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.197 1.197 26 H 0.271 0.729 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.181 0.819 31 H 0.182 0.818 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -28.917 4.876 2.094 29.400 hybrid contribution 1.040 0.282 -0.360 1.136 sum -27.877 5.158 1.734 28.403 Atomic orbital electron populations 1.25844 0.96616 0.97891 0.95954 1.22905 0.94293 1.03219 1.04271 1.17884 0.84051 0.98655 0.88593 1.45793 1.06465 1.60832 1.24079 1.20629 0.82085 0.79650 0.88198 1.90898 1.55974 1.48242 1.47657 1.21650 0.91478 1.06955 0.98669 1.20830 0.90905 0.78087 0.81714 1.90866 1.70739 1.44848 1.36396 1.47924 1.05688 1.58567 1.22491 1.22153 0.97775 0.99312 0.88036 1.21353 0.79756 0.98380 0.99936 1.22500 0.84677 0.93759 0.95616 0.92123 1.23370 0.97547 0.98236 0.98131 1.22054 0.94704 0.85957 0.95264 1.45918 1.01661 1.03385 1.84731 1.19293 0.85665 0.88919 1.41097 0.89085 1.25735 0.99452 0.98308 1.03298 1.70048 1.16965 1.15898 1.57804 0.85087 0.77698 0.77722 0.78437 1.20246 1.22397 1.19722 0.72908 0.90106 0.90175 0.74309 0.81871 0.81831 0.90373 0.91112 0.87667 0.90692 0.93042 0.92302 0.90809 0.95981 0.94699 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 19.25 74.32 1.43 0.19 16 2 C -0.25 -3.22 13.46 31.13 0.42 -2.80 16 3 C 0.23 3.79 6.15 84.57 0.52 4.31 16 4 N -0.72 -10.19 5.54 -472.13 -2.61 -12.81 16 5 C 0.51 11.31 7.82 87.66 0.69 11.99 16 6 O -0.55 -19.97 14.18 20.42 0.29 -19.68 16 7 C -0.15 -2.16 4.81 29.10 0.14 -2.02 16 8 C 0.50 14.29 7.67 87.66 0.67 14.97 16 9 O -0.55 -23.33 13.68 20.40 0.28 -23.05 16 10 N -0.61 -16.13 2.87 -846.77 -2.43 -18.56 16 11 C 0.07 0.95 10.17 127.77 1.30 2.25 16 12 C 0.13 4.83 5.38 86.38 0.47 5.30 16 13 C 0.14 5.94 4.31 41.79 0.18 6.12 16 14 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 15 C -0.13 -5.98 8.02 30.97 0.25 -5.73 16 16 C 0.15 7.66 7.44 83.22 0.62 8.28 16 17 N -0.63 -33.93 3.65 -713.22 -2.61 -36.54 16 18 C -0.22 -12.70 10.55 84.03 0.89 -11.81 16 19 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 20 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 21 N -0.96 -60.84 11.47 21.65 0.25 -60.60 16 22 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 H 0.25 0.06 7.80 -4.41 -0.03 0.02 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.42 2.73 8.45 -92.71 -0.78 1.95 16 30 H 0.16 1.04 7.41 -2.39 -0.02 1.02 16 31 H 0.16 0.98 8.11 -2.39 -0.02 0.96 16 32 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 34 H 0.10 0.64 6.66 -2.39 -0.02 0.62 16 35 H 0.07 2.68 8.11 -2.39 -0.02 2.67 16 36 H 0.05 2.30 7.01 -2.38 -0.02 2.28 16 37 H 0.06 2.91 7.94 -2.38 -0.02 2.89 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 2.07 7.05 -2.39 -0.02 2.05 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -91.10 354.35 3.47 -87.63 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.25 Total: 7.55 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 8.03 Total: 27.06 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -7.40 Total: -128.50 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: 0.57 Total: -42.73 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -91.10 3.47 -87.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233810444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.308 kcal (2) G-P(sol) polarization free energy of solvation -91.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds