Wall clock time and date at job start Tue Mar 31 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30830 * 125.96095 * 2 1 4 4 C 1.33242 * 109.82903 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52595 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47303 * 89.99894 * 5 4 3 7 7 O 1.21284 * 120.00107 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00091 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00091 * 359.97438 * 8 6 5 10 10 C 1.46501 * 120.00218 * 180.02562 * 8 6 5 11 11 C 1.53000 * 109.47353 * 95.21631 * 10 8 6 12 12 H 1.08993 * 112.73528 * 43.87588 * 11 10 8 13 13 C 1.53492 * 113.46566 * 273.12834 * 11 10 8 14 14 C 1.53676 * 83.28339 * 219.12447 * 13 11 10 15 15 N 1.47066 * 113.46477 * 174.61765 * 11 10 8 16 16 C 1.36940 * 136.05968 * 321.99137 * 15 11 10 17 17 H 1.07996 * 119.99816 * 355.15134 * 16 15 11 18 18 C 1.38806 * 119.99880 * 175.14672 * 16 15 11 19 19 N 1.31621 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47186 * 60.00543 * 20 18 16 22 22 H 1.48510 * 109.46973 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47420 * 299.99830 * 20 18 16 24 24 N 1.30710 * 108.94643 * 0.26328 * 4 3 2 25 25 N 1.34430 * 125.96264 * 179.97438 * 2 1 3 26 26 H 0.97000 * 126.82195 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.46908 * 90.02719 * 1 2 3 28 28 H 1.09007 * 109.46943 * 210.02629 * 1 2 3 29 29 H 1.09004 * 109.46892 * 330.02083 * 1 2 3 30 30 H 1.09005 * 109.47070 * 329.99539 * 5 4 3 31 31 H 1.08997 * 109.47010 * 210.00046 * 5 4 3 32 32 H 1.09006 * 109.47338 * 275.24118 * 9 8 6 33 33 H 1.08999 * 109.46799 * 35.23831 * 9 8 6 34 34 H 1.09000 * 109.47199 * 155.23609 * 9 8 6 35 35 H 1.09001 * 109.46874 * 335.21582 * 10 8 6 36 36 H 1.09002 * 109.46763 * 215.22189 * 10 8 6 37 37 H 1.08997 * 114.21014 * 332.68158 * 13 11 10 38 38 H 1.09000 * 114.20716 * 105.50670 * 13 11 10 39 39 H 1.08996 * 113.47291 * 271.29559 * 14 13 11 40 40 H 1.09001 * 113.53009 * 140.85031 * 14 13 11 41 41 H 0.97004 * 119.99834 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1305 1.9351 1.4223 7 8 4.5123 1.4456 2.3438 8 7 6.1700 2.7566 1.6692 9 6 6.9180 3.3465 0.5561 10 6 6.5528 3.0590 3.0506 11 6 7.6738 2.1139 3.4878 12 1 8.4434 1.9923 2.7256 13 6 7.1638 0.7839 4.0594 14 6 8.3216 0.9739 5.0519 15 7 8.2132 2.4223 4.8207 16 6 8.4913 3.5581 5.5334 17 1 8.3780 4.5272 5.0705 18 6 8.9187 3.4637 6.8506 19 7 9.0571 2.2825 7.4146 20 14 9.2974 5.0131 7.8229 21 1 8.0792 5.8588 7.9008 22 1 9.7322 4.6432 9.1939 23 1 10.3823 5.7689 7.1471 24 7 3.6195 -0.6168 -0.0048 25 7 2.2965 -1.0881 0.0005 26 1 2.0094 -2.0146 0.0006 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.4704 2.5471 -0.5126 31 1 5.5745 1.1511 -0.5122 32 1 7.6820 2.6456 0.2198 33 1 6.2357 3.5623 -0.2661 34 1 7.3926 4.2705 0.8865 35 1 5.6903 2.9263 3.7038 36 1 6.9012 4.0899 3.1137 37 1 6.1737 0.8420 4.5114 38 1 7.2843 -0.0665 3.3883 39 1 9.2638 0.5486 4.7064 40 1 8.0741 0.6774 6.0712 41 1 9.3561 2.2166 8.3350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234206954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:31 Heat of formation + Delta-G solvation = 114.577435 kcal Electronic energy + Delta-G solvation = -23421.629435 eV Core-core repulsion = 19954.882854 eV Total energy + Delta-G solvation = -3466.746581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.26785 -39.66824 -37.81821 -35.14826 -33.79739 -32.50570 -32.13228 -30.43817 -28.40177 -27.81713 -27.59651 -26.07759 -23.31982 -22.60284 -21.57009 -20.71421 -19.09150 -18.89472 -17.99501 -17.08326 -16.58229 -15.96530 -15.62936 -15.48708 -14.72334 -14.56690 -13.97819 -13.66818 -13.60998 -13.48711 -13.07920 -12.97152 -12.92957 -12.62516 -12.19193 -12.04282 -11.92945 -11.87687 -11.41275 -10.99171 -10.76846 -10.67252 -10.35662 -10.27091 -10.14268 -9.78476 -9.72721 -9.69458 -9.49685 -9.30378 -8.70785 -8.20142 -6.79033 -5.68610 -3.02450 1.45719 2.46799 2.65253 2.86817 3.32334 3.43395 3.47097 3.48662 3.80452 4.36885 4.50819 4.56562 4.72199 4.97254 5.05389 5.15160 5.24206 5.35456 5.40851 5.45971 5.49932 5.56885 5.70364 5.74960 5.96371 6.09755 6.11511 6.18337 6.27672 6.50811 6.62295 6.75409 6.87259 6.89145 6.91162 7.34155 7.55297 7.65560 7.69018 7.97395 8.07292 8.42997 9.09830 9.77500 10.73701 11.47886 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.003227 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.004916 B = 8674.192779 C = 8888.110971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.281 3.719 3 N -0.531 5.531 4 C 0.254 3.746 5 C -0.048 4.048 6 C 0.519 3.481 7 O -0.523 6.523 8 N -0.610 5.610 9 C 0.076 3.924 10 C 0.116 3.884 11 C 0.132 3.868 12 H 0.041 0.959 13 C -0.156 4.156 14 C 0.147 3.853 15 N -0.601 5.601 16 C -0.218 4.218 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 N -0.302 5.302 25 N -0.483 5.483 26 H 0.439 0.561 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.020 0.980 40 H 0.075 0.925 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.789 -4.061 -19.935 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.261 5.261 4 C -0.030 4.030 5 C -0.090 4.090 6 C 0.304 3.696 7 O -0.398 6.398 8 N -0.345 5.345 9 C -0.067 4.067 10 C -0.007 4.007 11 C 0.023 3.977 12 H 0.058 0.942 13 C -0.194 4.194 14 C 0.021 3.979 15 N -0.327 5.327 16 C -0.345 4.345 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.213 1.213 24 N -0.131 5.131 25 N -0.201 5.201 26 H 0.284 0.716 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.093 0.907 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.414 -4.128 -19.115 23.714 hybrid contribution 0.210 0.189 0.484 0.561 sum -13.204 -3.939 -18.630 23.172 Atomic orbital electron populations 1.20381 0.83715 1.05133 1.04323 1.24342 0.96565 0.82832 0.95990 1.70285 1.01309 1.29558 1.24901 1.23288 0.92603 0.89743 0.97341 1.19957 0.93579 0.98475 0.97018 1.20038 0.80229 0.79064 0.90228 1.90740 1.52617 1.50487 1.45988 1.47826 1.31243 1.47410 1.07983 1.21827 0.96444 0.99128 0.89302 1.21941 0.99396 0.99390 0.79953 1.22428 0.92632 0.92859 0.89745 0.94197 1.23640 1.00220 0.96031 0.99500 1.22154 0.92794 0.84345 0.98582 1.45572 1.73921 1.02167 1.11043 1.18826 1.38966 0.84024 0.92686 0.90380 1.24793 1.02125 0.96803 0.96690 1.69831 1.52122 1.21419 1.13128 0.86213 0.78111 0.82182 0.79315 1.21040 1.21597 1.21263 1.77993 0.96578 1.12239 1.26309 1.47924 1.04302 1.09960 1.57920 0.71577 0.89104 0.89894 0.88309 0.86311 0.86655 0.92454 0.91504 0.90560 0.89382 0.90947 0.90140 0.93392 0.96253 0.90707 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.28 3.00 8.24 -155.69 -1.28 1.72 16 3 N -0.53 -7.50 11.19 -8.16 -0.09 -7.59 16 4 C 0.25 3.69 6.63 -156.86 -1.04 2.64 16 5 C -0.05 -0.58 4.95 -29.04 -0.14 -0.73 16 6 C 0.52 8.40 7.67 -10.99 -0.08 8.31 16 7 O -0.52 -10.84 15.54 5.55 0.09 -10.76 16 8 N -0.61 -9.24 2.87 -181.57 -0.52 -9.76 16 9 C 0.08 0.78 10.19 59.85 0.61 1.39 16 10 C 0.12 2.21 5.44 -4.04 -0.02 2.19 16 11 C 0.13 2.84 4.31 -72.41 -0.31 2.53 16 12 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.16 -3.44 8.03 -26.13 -0.21 -3.65 16 14 C 0.15 3.74 7.52 -8.42 -0.06 3.68 16 15 N -0.60 -15.99 3.65 -176.78 -0.64 -16.63 16 16 C -0.22 -6.19 10.55 -15.06 -0.16 -6.35 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -28.14 11.43 55.49 0.63 -27.50 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 N -0.30 -4.38 12.80 32.42 0.41 -3.96 16 25 N -0.48 -5.13 7.45 32.62 0.24 -4.89 16 26 H 0.44 2.88 8.96 -182.34 -1.63 1.25 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.12 1.12 7.41 -51.93 -0.39 0.73 16 31 H 0.12 1.12 8.11 -51.93 -0.42 0.70 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.49 6.66 -51.93 -0.35 0.14 16 34 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 35 H 0.09 1.92 7.00 -51.93 -0.36 1.55 16 36 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 37 H 0.08 1.90 7.94 -51.93 -0.41 1.49 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 2.11 6.92 -51.93 -0.36 1.75 16 41 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -38.65 347.28 -9.34 -47.99 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.25 Total: -1.04 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -2.42 Total: 11.41 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: 0.03 Total: -70.34 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.65 -9.34 -47.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234206954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.567 kcal (2) G-P(sol) polarization free energy of solvation -38.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds