Wall clock time and date at job start Tue Mar 31 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30830 * 125.96095 * 2 1 4 4 C 1.33242 * 109.82903 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52595 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47303 * 89.99894 * 5 4 3 7 7 O 1.21284 * 120.00107 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00091 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00091 * 359.97438 * 8 6 5 10 10 C 1.46501 * 120.00218 * 180.02562 * 8 6 5 11 11 C 1.53000 * 109.47353 * 95.21631 * 10 8 6 12 12 H 1.08993 * 112.73528 * 43.87588 * 11 10 8 13 13 C 1.53492 * 113.46566 * 273.12834 * 11 10 8 14 14 C 1.53676 * 83.28339 * 219.12447 * 13 11 10 15 15 N 1.47066 * 113.46477 * 174.61765 * 11 10 8 16 16 C 1.36940 * 136.05968 * 321.99137 * 15 11 10 17 17 H 1.07996 * 119.99816 * 355.15134 * 16 15 11 18 18 C 1.38806 * 119.99880 * 175.14672 * 16 15 11 19 19 N 1.31621 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47186 * 60.00543 * 20 18 16 22 22 H 1.48510 * 109.46973 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47420 * 299.99830 * 20 18 16 24 24 N 1.30710 * 108.94643 * 0.26328 * 4 3 2 25 25 N 1.34430 * 125.96264 * 179.97438 * 2 1 3 26 26 H 0.97000 * 126.82195 * 0.02562 * 25 2 1 27 27 H 1.08995 * 109.46908 * 90.02719 * 1 2 3 28 28 H 1.09007 * 109.46943 * 210.02629 * 1 2 3 29 29 H 1.09004 * 109.46892 * 330.02083 * 1 2 3 30 30 H 1.09005 * 109.47070 * 329.99539 * 5 4 3 31 31 H 1.08997 * 109.47010 * 210.00046 * 5 4 3 32 32 H 1.09006 * 109.47338 * 275.24118 * 9 8 6 33 33 H 1.08999 * 109.46799 * 35.23831 * 9 8 6 34 34 H 1.09000 * 109.47199 * 155.23609 * 9 8 6 35 35 H 1.09001 * 109.46874 * 335.21582 * 10 8 6 36 36 H 1.09002 * 109.46763 * 215.22189 * 10 8 6 37 37 H 1.08997 * 114.21014 * 332.68158 * 13 11 10 38 38 H 1.09000 * 114.20716 * 105.50670 * 13 11 10 39 39 H 1.08996 * 113.47291 * 271.29559 * 14 13 11 40 40 H 1.09001 * 113.53009 * 140.85031 * 14 13 11 41 41 H 0.97004 * 119.99834 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7372 1.6236 0.0013 6 6 5.1305 1.9351 1.4223 7 8 4.5123 1.4456 2.3438 8 7 6.1700 2.7566 1.6692 9 6 6.9180 3.3465 0.5561 10 6 6.5528 3.0590 3.0506 11 6 7.6738 2.1139 3.4878 12 1 8.4434 1.9923 2.7256 13 6 7.1638 0.7839 4.0594 14 6 8.3216 0.9739 5.0519 15 7 8.2132 2.4223 4.8207 16 6 8.4913 3.5581 5.5334 17 1 8.3780 4.5272 5.0705 18 6 8.9187 3.4637 6.8506 19 7 9.0571 2.2825 7.4146 20 14 9.2974 5.0131 7.8229 21 1 8.0792 5.8588 7.9008 22 1 9.7322 4.6432 9.1939 23 1 10.3823 5.7689 7.1471 24 7 3.6195 -0.6168 -0.0048 25 7 2.2965 -1.0881 0.0005 26 1 2.0094 -2.0146 0.0006 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 4.4704 2.5471 -0.5126 31 1 5.5745 1.1511 -0.5122 32 1 7.6820 2.6456 0.2198 33 1 6.2357 3.5623 -0.2661 34 1 7.3926 4.2705 0.8865 35 1 5.6903 2.9263 3.7038 36 1 6.9012 4.0899 3.1137 37 1 6.1737 0.8420 4.5114 38 1 7.2843 -0.0665 3.3883 39 1 9.2638 0.5486 4.7064 40 1 8.0741 0.6774 6.0712 41 1 9.3561 2.2166 8.3350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234206954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:31 Heat of formation + Delta-G solvation = 86.603221 kcal Electronic energy + Delta-G solvation = -23422.842488 eV Core-core repulsion = 19954.882854 eV Total energy + Delta-G solvation = -3467.959634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.14942 -41.01927 -39.61436 -36.45069 -34.69896 -34.24964 -33.33643 -31.49208 -29.93460 -29.48556 -28.50852 -27.19909 -25.41120 -24.16823 -22.55920 -21.73235 -21.02858 -20.05304 -18.85868 -18.76653 -18.06182 -17.30370 -17.01537 -16.48450 -16.41782 -15.88106 -15.60247 -15.11015 -14.89904 -14.50462 -14.04945 -13.92894 -13.76611 -13.61598 -13.59665 -13.45596 -13.11229 -13.01614 -12.95159 -12.72479 -12.62657 -12.50469 -12.26685 -11.78841 -11.70238 -11.26553 -11.19288 -11.08721 -10.85880 -10.78584 -10.41920 -9.57742 -8.90728 -7.87779 -5.23542 0.58771 1.45228 1.50103 1.55579 1.62274 1.67695 1.76772 2.20181 2.50019 3.02992 3.31761 3.42403 3.55612 3.71168 3.86900 3.92972 4.22615 4.32711 4.37204 4.40850 4.42510 4.48333 4.69029 4.71690 4.74475 4.83449 4.86217 4.98814 5.02387 5.06364 5.07981 5.22406 5.26399 5.37025 5.48411 5.52401 5.73551 5.94330 6.22704 6.46237 6.89806 7.08706 7.22065 7.61247 8.62552 9.29350 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026788 B = 0.003227 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.004916 B = 8674.192779 C = 8888.110971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.284 3.716 3 N -0.568 5.568 4 C 0.236 3.764 5 C -0.039 4.039 6 C 0.514 3.486 7 O -0.578 6.578 8 N -0.607 5.607 9 C 0.067 3.933 10 C 0.131 3.869 11 C 0.140 3.860 12 H 0.060 0.940 13 C -0.134 4.134 14 C 0.143 3.857 15 N -0.628 5.628 16 C -0.224 4.224 17 H 0.091 0.909 18 C -0.073 4.073 19 N -0.957 5.957 20 Si 0.983 3.017 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.273 1.273 24 N -0.338 5.338 25 N -0.476 5.476 26 H 0.454 0.546 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.022 0.978 40 H 0.039 0.961 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.450 -3.088 -22.578 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.006 3.994 3 N -0.299 5.299 4 C -0.048 4.048 5 C -0.080 4.080 6 C 0.302 3.698 7 O -0.457 6.457 8 N -0.340 5.340 9 C -0.074 4.074 10 C 0.006 3.994 11 C 0.033 3.967 12 H 0.078 0.922 13 C -0.172 4.172 14 C 0.017 3.983 15 N -0.355 5.355 16 C -0.352 4.352 17 H 0.109 0.891 18 C -0.265 4.265 19 N -0.606 5.606 20 Si 0.810 3.190 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.198 1.198 24 N -0.168 5.168 25 N -0.196 5.196 26 H 0.303 0.697 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.082 -3.154 -21.840 26.177 hybrid contribution 0.339 -0.186 1.235 1.294 sum -13.744 -3.340 -20.604 24.992 Atomic orbital electron populations 1.20637 0.80111 1.06236 1.06258 1.25248 0.98317 0.82060 0.93749 1.70285 1.01655 1.31283 1.26648 1.23712 0.93476 0.90108 0.97458 1.20045 0.93957 0.99807 0.94235 1.20774 0.79518 0.78057 0.91442 1.90718 1.54448 1.52602 1.47977 1.47852 1.31411 1.47292 1.07420 1.22200 0.97344 0.99403 0.88494 1.21441 0.96932 0.98862 0.82121 1.22502 0.93334 0.92620 0.88220 0.92233 1.23362 0.97672 0.97572 0.98580 1.22109 0.94072 0.84574 0.97507 1.45883 1.74333 1.01994 1.13251 1.19308 1.37540 0.85229 0.93133 0.89085 1.25724 1.02862 0.99963 0.97953 1.70050 1.53800 1.23731 1.13017 0.85094 0.78284 0.78428 0.77179 1.20105 1.22363 1.19848 1.77868 0.98790 1.12628 1.27493 1.47867 1.03318 1.10984 1.57467 0.69734 0.86572 0.87302 0.88613 0.83285 0.83934 0.90923 0.87816 0.90095 0.92794 0.90325 0.92258 0.91071 0.96051 0.94279 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.28 5.67 8.24 138.23 1.14 6.81 16 3 N -0.57 -15.47 11.19 -179.72 -2.01 -17.48 16 4 C 0.24 6.59 6.63 138.63 0.92 7.51 16 5 C -0.04 -0.85 4.95 29.10 0.14 -0.71 16 6 C 0.51 16.02 7.67 87.65 0.67 16.69 16 7 O -0.58 -24.30 15.54 -3.04 -0.05 -24.34 16 8 N -0.61 -17.19 2.87 -846.75 -2.43 -19.63 16 9 C 0.07 1.12 10.19 127.77 1.30 2.42 16 10 C 0.13 4.92 5.44 86.38 0.47 5.39 16 11 C 0.14 5.97 4.31 41.78 0.18 6.15 16 12 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.13 -5.97 8.03 30.99 0.25 -5.72 16 14 C 0.14 7.51 7.52 83.23 0.63 8.14 16 15 N -0.63 -33.79 3.65 -713.22 -2.60 -36.39 16 16 C -0.22 -12.81 10.55 84.03 0.89 -11.93 16 17 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.96 -60.48 11.43 21.65 0.25 -60.23 16 20 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 N -0.34 -9.52 12.80 -51.34 -0.66 -10.18 16 25 N -0.48 -9.58 7.45 -50.70 -0.38 -9.96 16 26 H 0.45 5.37 8.96 -213.10 -1.91 3.46 16 27 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.15 2.28 7.41 -2.38 -0.02 2.26 16 31 H 0.14 2.29 8.11 -2.39 -0.02 2.28 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.10 1.01 6.66 -2.39 -0.02 0.99 16 34 H 0.08 1.32 7.89 -2.39 -0.02 1.30 16 35 H 0.05 2.41 7.00 -2.39 -0.02 2.39 16 36 H 0.08 2.84 7.94 -2.39 -0.02 2.82 16 37 H 0.06 2.91 7.94 -2.39 -0.02 2.89 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 2.31 6.92 -2.39 -0.02 2.29 16 41 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -87.71 347.28 1.09 -86.62 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.86 Total: 11.70 kcal Atomic # 6 Polarization: 23.29 SS G_CDS: 7.80 Total: 31.09 kcal Atomic # 7 Polarization: -146.03 SS G_CDS: -7.83 Total: -153.86 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -87.71 1.09 -86.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234206954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.222 kcal (2) G-P(sol) polarization free energy of solvation -87.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds