Wall clock time and date at job start Tue Mar 31 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.04037 * 2 1 4 4 C 1.35309 * 107.74691 * 180.02562 * 3 2 1 5 5 C 1.50710 * 126.04032 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46997 * 89.99528 * 5 4 3 7 7 C 1.50703 * 109.47008 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99581 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00093 * 179.97438 * 7 6 5 10 10 C 1.47423 * 125.64675 * 0.02957 * 9 7 6 11 11 C 1.54913 * 104.83089 * 155.83077 * 10 9 7 12 12 C 1.55160 * 101.57624 * 37.01185 * 11 10 9 13 13 O 1.42897 * 110.72162 * 83.04075 * 12 11 10 14 14 C 1.50702 * 110.71656 * 206.13323 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55159 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26718 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.47020 * 125.64834 * 179.97438 * 9 7 6 23 23 C 1.39870 * 107.92297 * 0.26041 * 4 3 2 24 24 N 1.30836 * 108.19858 * 359.55818 * 23 4 3 25 25 H 1.09008 * 109.47195 * 90.00022 * 1 2 3 26 26 H 1.08998 * 109.47631 * 210.00341 * 1 2 3 27 27 H 1.09002 * 109.47161 * 330.00754 * 1 2 3 28 28 H 1.08001 * 126.12694 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.46886 * 329.99557 * 5 4 3 30 30 H 1.09000 * 109.47220 * 209.99827 * 5 4 3 31 31 H 1.09001 * 109.47279 * 60.00269 * 6 5 4 32 32 H 1.09000 * 109.47379 * 300.00201 * 6 5 4 33 33 H 1.09003 * 110.36676 * 36.99782 * 10 9 7 34 34 H 1.08990 * 110.36997 * 274.67168 * 10 9 7 35 35 H 1.08989 * 111.00550 * 278.93903 * 11 10 9 36 36 H 1.08995 * 111.00094 * 155.08083 * 11 10 9 37 37 H 0.96698 * 114.00670 * 63.83578 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.88085 * 61.67684 * 22 9 7 40 40 H 1.09002 * 109.87937 * 300.51640 * 22 9 7 41 41 H 1.08001 * 125.90108 * 179.73758 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7681 1.5452 -0.0002 6 6 5.1826 1.8416 1.4423 7 6 6.4073 2.7198 1.4427 8 8 6.8997 3.0740 0.3924 9 7 6.9548 3.1123 2.6100 10 6 6.4609 2.7574 3.9530 11 6 7.6968 2.8894 4.8777 12 6 8.4127 4.1228 4.2664 13 8 7.8414 5.3356 4.7610 14 6 9.8916 4.0768 4.5526 15 1 10.5982 4.0288 3.7372 16 6 10.3428 4.1019 5.8552 17 7 9.4824 4.1603 6.8481 18 14 12.1762 4.0526 6.2097 19 1 12.9263 3.9895 4.9297 20 1 12.5695 5.2762 6.9536 21 1 12.4903 2.8536 7.0276 22 6 8.1441 3.9644 2.7550 23 6 3.5346 -0.7322 -0.0070 24 7 2.2891 -1.1328 -0.0006 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 1.9282 2.1193 -0.0004 29 1 4.5442 2.4804 -0.5135 30 1 5.5821 1.0343 -0.5146 31 1 5.4065 0.9064 1.9556 32 1 4.3686 2.3525 1.9567 33 1 6.0883 1.7331 3.9617 34 1 5.6784 3.4492 4.2645 35 1 8.3267 2.0021 4.8169 36 1 7.3955 3.0830 5.9071 37 1 7.9498 5.4617 5.7136 38 1 9.7998 4.1775 7.7646 39 1 7.9575 4.9406 2.3075 40 1 9.0000 3.4912 2.2738 41 1 4.4053 -1.3711 -0.0130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326348924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:25 Heat of formation + Delta-G solvation = -11.795259 kcal Electronic energy + Delta-G solvation = -23121.848049 eV Core-core repulsion = 19617.328785 eV Total energy + Delta-G solvation = -3504.519263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33343 -39.44405 -37.32087 -34.37860 -34.27369 -32.65902 -32.21606 -30.08054 -29.28994 -28.30855 -27.01008 -25.25198 -23.60993 -22.09609 -21.24088 -20.23821 -19.64938 -18.58473 -17.30362 -17.03345 -16.31083 -15.65452 -15.58012 -14.99276 -14.92087 -14.63219 -14.21293 -14.04475 -13.60965 -13.17890 -13.03925 -13.00027 -12.81460 -12.25174 -12.14993 -11.98499 -11.87036 -11.46215 -11.35746 -11.34698 -11.05698 -10.91079 -10.60848 -10.55109 -10.46519 -10.11569 -9.57717 -9.44212 -9.27969 -8.68903 -8.46923 -8.21906 -7.97088 -6.29687 -4.37101 1.72502 2.34907 2.65647 3.13392 3.18550 3.27705 3.32672 3.63620 4.26587 4.30945 4.67880 4.82502 4.88155 4.96227 5.00079 5.07920 5.19156 5.31075 5.44110 5.54940 5.61635 5.72130 5.76511 5.81807 5.94636 6.03642 6.24138 6.25200 6.29831 6.47262 6.53399 6.72062 6.83800 6.92766 6.99459 7.30914 7.35858 7.53957 7.72659 8.01426 8.17117 8.65130 8.70031 9.29843 9.38699 10.77666 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033379 B = 0.002837 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.640816 B = 9865.883787 C = 9999.676939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.055 3.945 4 C -0.230 4.230 5 C -0.024 4.024 6 C -0.128 4.128 7 C 0.519 3.481 8 O -0.558 6.558 9 N -0.610 5.610 10 C 0.095 3.905 11 C -0.134 4.134 12 C 0.246 3.754 13 O -0.586 6.586 14 C -0.533 4.533 15 H 0.065 0.935 16 C 0.071 3.929 17 N -0.896 5.896 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.123 3.877 23 C 0.054 3.946 24 N -0.302 5.302 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.173 0.827 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.383 0.617 38 H 0.267 0.733 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.727 -6.966 -7.719 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.091 4.091 4 C -0.242 4.242 5 C -0.063 4.063 6 C -0.168 4.168 7 C 0.308 3.692 8 O -0.437 6.437 9 N -0.342 5.342 10 C -0.027 4.027 11 C -0.173 4.173 12 C 0.205 3.795 13 O -0.395 6.395 14 C -0.572 4.572 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.001 3.999 23 C -0.132 4.132 24 N -0.123 5.123 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.190 0.810 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.638 -7.724 -8.773 20.334 hybrid contribution 1.541 0.572 1.098 1.977 sum -15.097 -7.153 -7.675 18.384 Atomic orbital electron populations 1.21824 0.74407 1.04423 1.03209 1.48442 1.06536 1.03939 1.57412 1.22367 0.90928 0.93335 1.02467 1.20182 0.94573 0.94035 1.15386 1.19596 0.93356 0.98290 0.95025 1.21627 0.96007 1.00016 0.99135 1.20318 0.85292 0.81106 0.82483 1.90655 1.64183 1.58108 1.30787 1.48691 1.29784 1.50006 1.05752 1.22497 0.98832 0.98728 0.82684 1.23290 0.94120 1.01020 0.98893 1.19470 0.91473 0.81797 0.86722 1.86118 1.81430 1.42501 1.29453 1.21573 0.91381 1.51510 0.92716 0.91710 1.24998 0.98600 0.93541 0.95977 1.69704 1.34071 1.50365 0.99438 0.86363 0.84470 0.77694 0.78466 1.19575 1.20778 1.20841 1.22042 0.86181 0.93359 0.98345 1.23858 0.95120 0.94732 0.99523 1.77336 1.01805 1.08322 1.24835 0.90918 0.89412 0.89516 0.80970 0.90754 0.90378 0.89240 0.89507 0.92136 0.92039 0.91480 0.89430 0.76719 0.92284 0.92235 0.91046 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 11.47 59.85 0.69 1.27 16 2 N -0.38 -3.84 4.01 -68.16 -0.27 -4.11 16 3 C 0.05 0.54 11.40 -17.23 -0.20 0.34 16 4 C -0.23 -2.58 5.35 -105.05 -0.56 -3.14 16 5 C -0.02 -0.29 4.99 -27.88 -0.14 -0.43 16 6 C -0.13 -1.68 4.69 -27.88 -0.13 -1.81 16 7 C 0.52 9.42 7.85 -10.98 -0.09 9.34 16 8 O -0.56 -11.84 16.31 5.55 0.09 -11.75 16 9 N -0.61 -11.90 3.33 -170.52 -0.57 -12.46 16 10 C 0.10 1.69 6.68 -2.53 -0.02 1.68 16 11 C -0.13 -2.86 5.48 -24.58 -0.13 -3.00 16 12 C 0.25 5.87 0.85 -89.94 -0.08 5.79 16 13 O -0.59 -14.56 13.09 -35.23 -0.46 -15.02 16 14 C -0.53 -13.86 8.21 -34.44 -0.28 -14.14 16 15 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 16 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 17 N -0.90 -22.74 10.66 55.43 0.59 -22.15 16 18 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.12 2.76 6.22 -3.07 -0.02 2.74 16 23 C 0.05 0.61 11.96 -17.37 -0.21 0.41 16 24 N -0.30 -3.73 12.58 30.62 0.39 -3.35 16 25 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.90 7.48 -51.93 -0.39 0.51 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.47 8.04 -51.94 -0.42 1.05 16 36 H 0.09 1.94 7.55 -51.93 -0.39 1.54 16 37 H 0.38 9.50 7.41 45.56 0.34 9.83 16 38 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 39 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 40 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 41 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -31.01 344.20 -6.75 -37.75 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.42 Total: 10.03 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.26 Total: 0.76 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.13 Total: -42.08 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.37 Total: -26.77 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.01 -6.75 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326348924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.957 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds