Wall clock time and date at job start Tue Mar 31 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48499 * 109.47477 * 270.00251 * 3 2 1 5 5 H 1.48489 * 109.47119 * 30.00832 * 3 2 1 6 6 H 1.48507 * 109.46780 * 150.00810 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00364 * 170.00098 * 10 9 7 12 12 C 1.53230 * 109.34186 * 187.25323 * 11 10 9 13 13 N 1.47082 * 108.51951 * 306.16425 * 12 11 10 14 14 C 1.34777 * 120.87981 * 231.18555 * 13 12 11 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72731 * 14 13 12 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 N 1.33243 * 125.52491 * 269.68978 * 18 17 16 20 20 C 1.30834 * 109.82886 * 179.85402 * 19 18 17 21 21 N 1.34434 * 108.07427 * 0.40581 * 20 19 18 22 22 H 0.96997 * 126.82101 * 179.78681 * 21 20 19 23 23 N 1.30714 * 125.52758 * 89.99825 * 18 17 16 24 24 C 1.47079 * 118.23776 * 51.46441 * 13 12 11 25 25 C 1.46903 * 110.99692 * 294.29851 * 10 9 7 26 26 H 0.96995 * 119.99631 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46978 * 60.00190 * 9 7 2 28 28 H 1.08997 * 109.46756 * 300.00162 * 9 7 2 29 29 H 1.09007 * 109.49363 * 67.28772 * 11 10 9 30 30 H 1.09006 * 109.48829 * 307.21036 * 11 10 9 31 31 H 1.09007 * 109.62838 * 186.45836 * 12 11 10 32 32 H 1.08995 * 109.63343 * 65.87824 * 12 11 10 33 33 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 34 34 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 35 35 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 36 36 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 37 37 H 1.07998 * 125.95872 * 180.12195 * 20 19 18 38 38 H 1.08993 * 109.62875 * 68.24376 * 24 13 12 39 39 H 1.08998 * 109.63018 * 188.83153 * 24 13 12 40 40 H 1.09000 * 109.49258 * 292.70544 * 25 10 9 41 41 H 1.09002 * 109.49243 * 52.78589 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0466 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5469 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5637 -6.0031 0.4104 13 7 3.4614 -5.9862 -0.7546 14 6 3.7117 -7.1124 -1.4515 15 8 3.1936 -8.1579 -1.1208 16 6 4.6300 -7.0710 -2.6456 17 6 4.7372 -8.4703 -3.2553 18 6 5.6560 -8.4291 -4.4491 19 7 5.2814 -8.1981 -5.7067 20 6 6.3261 -8.2291 -6.4938 21 7 7.4078 -8.4943 -5.7409 22 1 8.3234 -8.5811 -6.0489 23 7 6.9488 -8.6198 -4.4195 24 6 4.0837 -4.7090 -1.1351 25 6 2.9766 -3.6491 -1.2505 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8897 29 1 0.8795 -5.1263 -0.6123 30 1 0.9160 -4.8191 1.1412 31 1 2.0631 -6.9694 0.4728 32 1 3.1394 -5.8265 1.3189 33 1 4.2295 -6.3809 -3.3883 34 1 5.6183 -6.7345 -2.3326 35 1 5.1375 -9.1604 -2.5127 36 1 3.7488 -8.8068 -3.5684 37 1 6.3198 -8.0737 -7.5625 38 1 4.8026 -4.4104 -0.3723 39 1 4.5884 -4.8192 -2.0949 40 1 2.3147 -3.8993 -2.0796 41 1 3.4270 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330281605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:46 Heat of formation + Delta-G solvation = 32.241216 kcal Electronic energy + Delta-G solvation = -23018.767655 eV Core-core repulsion = 19548.450707 eV Total energy + Delta-G solvation = -3470.316947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.05645 -41.21720 -39.02476 -35.96343 -35.33347 -34.38762 -33.03587 -32.30970 -31.38913 -29.98261 -27.59625 -26.09854 -24.60116 -23.79691 -23.53341 -22.01395 -21.10078 -19.80340 -19.24615 -18.48220 -18.19863 -17.04851 -16.90437 -16.65974 -16.26247 -16.01809 -15.97120 -15.55612 -15.31366 -14.91032 -14.79291 -14.15118 -14.01168 -13.80250 -13.52103 -13.19908 -13.09203 -12.99285 -12.73906 -12.58425 -12.37631 -12.30127 -12.16421 -12.10863 -11.75701 -11.27073 -11.09825 -11.03699 -10.88976 -10.62473 -10.60983 -9.75495 -9.05230 -8.19282 -6.29784 0.66064 1.44074 1.45591 1.57034 1.58424 1.76716 1.87363 2.07268 2.42075 3.13092 3.14015 3.24651 3.57795 3.73723 3.90753 4.02831 4.09393 4.16142 4.24848 4.29557 4.31846 4.45652 4.48846 4.63453 4.75786 4.85962 4.91682 4.95593 4.97627 5.03356 5.20431 5.24404 5.26497 5.37886 5.46665 5.64977 6.03298 6.23810 6.28843 6.43225 6.57039 6.86387 7.10936 7.13033 7.40363 8.92193 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.003041 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.328925 B = 9203.919616 C =10191.237347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.539 5.539 11 C 0.043 3.957 12 C 0.127 3.873 13 N -0.612 5.612 14 C 0.518 3.482 15 O -0.580 6.580 16 C -0.119 4.119 17 C -0.005 4.005 18 C 0.221 3.779 19 N -0.581 5.581 20 C 0.277 3.723 21 N -0.475 5.475 22 H 0.458 0.542 23 N -0.342 5.342 24 C 0.120 3.880 25 C 0.048 3.952 26 H 0.264 0.736 27 H -0.041 1.041 28 H 0.004 0.996 29 H 0.015 0.985 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.272 0.728 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.015 0.985 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.434 -15.018 -12.483 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.559 4.559 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.345 5.345 14 C 0.308 3.692 15 O -0.461 6.461 16 C -0.160 4.160 17 C -0.046 4.046 18 C -0.061 4.061 19 N -0.310 5.310 20 C -0.021 4.021 21 N -0.195 5.195 22 H 0.307 0.693 23 N -0.172 5.172 24 C -0.002 4.002 25 C -0.081 4.081 26 H 0.073 0.927 27 H -0.024 1.024 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.287 0.713 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.034 0.966 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.388 -15.480 -11.366 25.246 hybrid contribution -0.375 0.911 -0.937 1.359 sum 16.013 -14.569 -12.303 24.900 Atomic orbital electron populations 1.70101 1.07923 1.27920 1.51841 1.25954 0.95690 1.03365 0.94805 0.85351 0.78608 0.78052 0.78422 1.19746 1.21201 1.18518 1.21465 0.93858 0.90661 1.49937 0.91146 1.19374 0.90098 0.88964 0.93362 1.62017 1.27027 1.02559 1.34825 1.22438 0.95681 0.90084 1.00399 1.21606 0.91357 0.98260 0.88393 1.48316 1.46678 1.09205 1.30263 1.20957 0.81640 0.82487 0.84144 1.90662 1.53667 1.31207 1.70574 1.21527 1.00627 0.98806 0.95059 1.19518 0.97285 0.97109 0.90643 1.24209 0.90210 0.97588 0.94115 1.70444 1.32512 1.26307 1.01728 1.27057 0.80942 0.92818 1.01315 1.48094 1.12588 1.54339 1.04477 0.69280 1.77940 1.12852 1.27228 0.99201 1.22114 0.94536 0.80751 1.02822 1.22471 0.95655 1.00145 0.89779 0.92747 1.02370 0.97783 0.96721 0.90115 0.89122 0.89939 0.87435 0.86777 0.89198 0.89366 0.71258 0.89416 0.86709 0.96638 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.09 13.29 21.45 0.28 -55.80 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.52 -28.59 8.41 25.60 0.22 -28.37 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.97 4.72 85.56 0.40 11.37 16 10 N -0.54 -22.63 4.62 -898.88 -4.15 -26.78 16 11 C 0.04 1.57 5.62 86.38 0.49 2.06 16 12 C 0.13 3.87 6.60 86.35 0.57 4.44 16 13 N -0.61 -17.44 3.00 -817.05 -2.45 -19.90 16 14 C 0.52 14.45 7.71 87.66 0.68 15.13 16 15 O -0.58 -19.85 15.43 -3.04 -0.05 -19.89 16 16 C -0.12 -2.50 4.05 29.85 0.12 -2.38 16 17 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 18 C 0.22 4.83 7.39 138.63 1.03 5.85 16 19 N -0.58 -11.68 11.19 -191.80 -2.15 -13.82 16 20 C 0.28 2.85 13.13 180.36 2.37 5.22 16 21 N -0.48 -5.20 7.45 -60.49 -0.45 -5.65 16 22 H 0.46 1.31 8.96 -213.10 -1.91 -0.60 16 23 N -0.34 -6.93 12.80 -51.33 -0.66 -7.59 16 24 C 0.12 3.12 6.54 86.51 0.57 3.69 16 25 C 0.05 1.73 5.47 86.54 0.47 2.20 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 28 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 29 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 2.91 7.99 -2.38 -0.02 2.89 16 31 H 0.09 2.77 7.06 -2.38 -0.02 2.75 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.12 7.67 -2.38 -0.02 2.11 16 34 H 0.11 2.00 7.99 -2.39 -0.02 1.98 16 35 H 0.09 2.04 8.10 -2.39 -0.02 2.02 16 36 H 0.09 2.13 8.10 -2.39 -0.02 2.12 16 37 H 0.27 -0.41 8.06 -2.91 -0.02 -0.44 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.11 2.22 6.01 -2.39 -0.01 2.20 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 3.27 6.67 -2.39 -0.02 3.25 16 Total: -1.00 -77.34 339.56 -0.94 -78.28 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -0.86 Total: 6.34 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 7.52 Total: 19.69 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -9.57 Total: -129.54 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -77.34 -0.94 -78.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330281605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.522 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds