Wall clock time and date at job start Tue Mar 31 2020 03:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86804 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47204 * 274.98429 * 3 2 1 5 5 H 1.48493 * 109.46963 * 34.98852 * 3 2 1 6 6 H 1.48499 * 109.46594 * 154.98723 * 3 2 1 7 7 C 1.40050 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00160 * 186.14797 * 7 2 1 9 9 C 1.46374 * 119.99856 * 6.14787 * 7 2 1 10 10 O 1.21694 * 119.99989 * 353.93872 * 9 7 2 11 11 N 1.34776 * 120.00310 * 173.94443 * 9 7 2 12 12 C 1.46494 * 120.00625 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47385 * 179.97438 * 12 11 9 14 14 C 1.35352 * 126.74849 * 95.00069 * 13 12 11 15 15 N 1.35312 * 106.17352 * 180.02562 * 14 13 12 16 16 C 1.46502 * 125.86524 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47305 * 124.99832 * 16 15 14 18 18 N 1.46900 * 109.47170 * 179.97438 * 17 16 15 19 19 C 1.48535 * 110.99759 * 52.60620 * 18 17 16 20 20 C 1.54937 * 103.22602 * 159.71878 * 19 18 17 21 21 C 1.54595 * 102.92267 * 322.58191 * 20 19 18 22 22 C 1.47906 * 110.99769 * 170.00057 * 18 17 16 23 23 N 1.28715 * 108.26587 * 359.97438 * 15 14 13 24 24 N 1.28634 * 110.17527 * 0.02562 * 23 15 14 25 25 H 0.97005 * 119.99655 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99199 * 359.97438 * 11 9 7 27 27 H 1.09003 * 109.46691 * 59.99459 * 12 11 9 28 28 H 1.09000 * 109.47341 * 300.00465 * 12 11 9 29 29 H 1.07999 * 126.91072 * 0.26879 * 14 13 12 30 30 H 1.09000 * 109.46769 * 244.99935 * 16 15 14 31 31 H 1.09000 * 109.47210 * 4.99330 * 16 15 14 32 32 H 1.09000 * 109.47291 * 299.99783 * 17 16 15 33 33 H 1.09001 * 109.46950 * 59.99903 * 17 16 15 34 34 H 1.08999 * 110.67082 * 278.15686 * 19 18 17 35 35 H 1.09001 * 110.66881 * 41.28633 * 19 18 17 36 36 H 1.09005 * 110.72387 * 204.22880 * 20 19 18 37 37 H 1.08998 * 110.87693 * 81.01925 * 20 19 18 38 38 H 1.08994 * 110.31406 * 263.04069 * 21 20 19 39 39 H 1.08999 * 110.30420 * 140.87166 * 21 20 19 40 40 H 1.09000 * 109.91584 * 333.51075 * 22 18 17 41 41 H 1.08996 * 109.91226 * 94.61068 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4120 0.5920 7 6 2.0070 -1.2129 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4826 -0.1388 11 7 1.9610 -3.6341 -0.2602 12 6 1.2349 -4.8992 -0.3960 13 6 2.2198 -6.0333 -0.5173 14 6 2.6771 -6.8193 0.4852 15 7 3.5371 -7.6949 -0.0847 16 6 4.2811 -8.7457 0.6143 17 6 3.9945 -10.0971 -0.0433 18 7 4.7409 -11.1506 0.6573 19 6 4.4776 -11.1078 2.1185 20 6 4.8783 -12.5273 2.5927 21 6 4.4024 -13.4276 1.4295 22 6 4.3103 -12.4928 0.2091 23 7 3.5883 -7.4465 -1.3466 24 7 2.8142 -6.4610 -1.6367 25 1 -0.4850 0.8401 0.0004 26 1 2.9310 -3.6293 -0.2589 27 1 0.6091 -4.8649 -1.2879 28 1 0.6077 -5.0543 0.4819 29 1 2.4068 -6.7620 1.5293 30 1 5.3487 -8.5335 0.5583 31 1 3.9711 -8.7768 1.6589 32 1 2.9268 -10.3093 0.0127 33 1 4.3045 -10.0659 -1.0878 34 1 5.0985 -10.3519 2.5993 35 1 3.4217 -10.9207 2.3138 36 1 4.3610 -12.7856 3.5168 37 1 5.9578 -12.6032 2.7225 38 1 3.4243 -13.8522 1.6554 39 1 5.1266 -14.2209 1.2445 40 1 3.2821 -12.4519 -0.1506 41 1 4.9674 -12.8477 -0.5847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335464962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:22 Heat of formation + Delta-G solvation = 66.741124 kcal Electronic energy + Delta-G solvation = -22352.043193 eV Core-core repulsion = 18883.222274 eV Total energy + Delta-G solvation = -3468.820919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.19479 -39.54863 -37.26232 -35.55065 -33.64313 -32.53072 -32.28005 -30.71716 -29.59850 -28.53481 -26.97659 -25.02106 -24.43379 -22.09621 -21.46804 -21.33416 -20.56186 -19.62207 -17.70016 -17.15044 -16.63657 -16.44484 -15.91524 -15.34139 -15.06028 -14.84087 -14.48747 -14.39984 -13.97247 -13.59875 -13.41152 -13.28306 -12.89850 -12.47024 -12.18303 -12.10946 -11.93255 -11.72739 -11.65235 -11.50336 -11.33250 -11.12223 -11.08502 -10.93622 -10.57148 -10.42554 -10.19694 -10.03229 -9.19411 -9.04246 -8.81242 -7.57575 -7.48102 -6.16125 -4.59663 1.61424 2.17614 2.63256 3.17397 3.24475 3.27955 3.47140 3.93396 4.10486 4.15136 4.19552 4.35999 4.49481 4.50257 4.62752 4.69800 4.73702 4.94452 4.97430 5.04823 5.12407 5.16851 5.26219 5.29232 5.30687 5.32920 5.44128 5.53862 5.64359 5.65944 5.85194 6.11956 6.25359 6.32632 6.44294 6.53179 6.60483 7.47596 7.95494 8.10336 8.37130 8.61520 9.06250 9.55945 10.62783 10.81066 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039491 B = 0.002283 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.855900 B =12259.015799 C =12374.964605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.761 5.761 12 C 0.216 3.784 13 C -0.017 4.017 14 C -0.040 4.040 15 N -0.297 5.297 16 C 0.119 3.881 17 C 0.036 3.964 18 N -0.513 5.513 19 C 0.022 3.978 20 C -0.123 4.123 21 C -0.132 4.132 22 C 0.036 3.964 23 N -0.089 5.089 24 N -0.253 5.253 25 H 0.268 0.732 26 H 0.381 0.619 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.191 0.809 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 -25.260 6.460 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.090 3.910 13 C -0.155 4.155 14 C -0.191 4.191 15 N -0.091 5.091 16 C -0.003 4.003 17 C -0.093 4.093 18 N -0.238 5.238 19 C -0.106 4.106 20 C -0.161 4.161 21 C -0.170 4.170 22 C -0.092 4.092 23 N -0.069 5.069 24 N -0.121 5.121 25 H 0.079 0.921 26 H 0.213 0.787 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.208 0.792 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.465 -25.496 4.993 28.008 hybrid contribution -0.319 0.824 1.251 1.532 sum 10.146 -24.672 6.244 27.397 Atomic orbital electron populations 1.70030 1.07052 1.27227 1.35343 1.25703 0.94607 1.00269 0.92623 0.86358 0.80191 0.81488 0.78703 1.19778 1.20490 1.18934 1.20863 0.94090 0.89476 1.53674 0.91410 1.18220 0.87120 0.82190 0.76372 1.90601 1.14037 1.86288 1.55472 1.46158 1.08700 1.05023 1.81869 1.19053 0.90218 0.80039 1.01728 1.22366 1.02923 1.01161 0.89039 1.23464 0.98284 0.95525 1.01794 1.47257 1.30369 1.24204 1.07299 1.22050 0.97854 0.84620 0.95756 1.22532 0.96848 0.89610 1.00327 1.64829 1.52887 1.02402 1.03650 1.23398 0.99797 0.98635 0.88720 1.22468 1.02052 0.93767 0.97824 1.22411 1.01815 0.98237 0.94562 1.22894 0.99640 0.88371 0.98267 1.78273 1.19428 1.13938 0.95227 1.75130 1.06498 1.05379 1.25056 0.92133 0.78749 0.91411 0.91506 0.79232 0.87422 0.87809 0.93606 0.88445 0.89501 0.93305 0.90842 0.90465 0.91362 0.90723 0.93423 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.85 55.55 0.66 -22.58 16 2 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 3 Si 0.91 20.44 29.56 -169.99 -5.03 15.41 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -15.63 9.53 -35.63 -0.34 -15.97 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 9 C 0.56 16.10 7.74 -12.99 -0.10 16.00 16 10 O -0.58 -18.96 15.05 5.19 0.08 -18.89 16 11 N -0.76 -17.68 5.54 -62.90 -0.35 -18.03 16 12 C 0.22 4.33 6.23 -5.20 -0.03 4.30 16 13 C -0.02 -0.29 6.62 -82.78 -0.55 -0.83 16 14 C -0.04 -0.52 11.50 -17.05 -0.20 -0.71 16 15 N -0.30 -3.64 3.44 -61.26 -0.21 -3.85 16 16 C 0.12 0.94 6.11 -4.04 -0.02 0.91 16 17 C 0.04 0.28 5.15 -3.82 -0.02 0.26 16 18 N -0.51 -3.56 5.40 -230.45 -1.24 -4.80 16 19 C 0.02 0.12 5.10 -1.90 -0.01 0.11 16 20 C -0.12 -0.57 7.06 -24.87 -0.18 -0.75 16 21 C -0.13 -0.64 6.93 -25.37 -0.18 -0.81 16 22 C 0.04 0.22 6.70 -2.75 -0.02 0.20 16 23 N -0.09 -1.41 12.91 60.35 0.78 -0.63 16 24 N -0.25 -4.65 12.41 33.29 0.41 -4.24 16 25 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 26 H 0.38 8.15 8.44 -40.82 -0.34 7.80 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.19 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.56 6.72 -51.93 -0.35 0.21 16 32 H 0.05 0.38 7.81 -51.93 -0.41 -0.02 16 33 H 0.10 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.09 0.40 7.66 -51.93 -0.40 0.00 16 35 H 0.05 0.26 8.00 -51.93 -0.42 -0.15 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.30 7.57 -51.93 -0.39 -0.09 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -36.59 345.32 -7.51 -44.10 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.08 Total: 3.21 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.74 Total: 5.10 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.05 Total: -54.14 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.08 Total: -18.89 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.59 -7.51 -44.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335464962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.840 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds