Wall clock time and date at job start Tue Mar 31 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86804 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47204 * 274.98429 * 3 2 1 5 5 H 1.48493 * 109.46963 * 34.98852 * 3 2 1 6 6 H 1.48499 * 109.46594 * 154.98723 * 3 2 1 7 7 C 1.40050 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00160 * 186.14797 * 7 2 1 9 9 C 1.46374 * 119.99856 * 6.14787 * 7 2 1 10 10 O 1.21694 * 119.99989 * 353.93872 * 9 7 2 11 11 N 1.34776 * 120.00310 * 173.94443 * 9 7 2 12 12 C 1.46494 * 120.00625 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47385 * 179.97438 * 12 11 9 14 14 C 1.35352 * 126.74849 * 95.00069 * 13 12 11 15 15 N 1.35312 * 106.17352 * 180.02562 * 14 13 12 16 16 C 1.46502 * 125.86524 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47305 * 124.99832 * 16 15 14 18 18 N 1.46900 * 109.47170 * 179.97438 * 17 16 15 19 19 C 1.48535 * 110.99759 * 52.60620 * 18 17 16 20 20 C 1.54937 * 103.22602 * 159.71878 * 19 18 17 21 21 C 1.54595 * 102.92267 * 322.58191 * 20 19 18 22 22 C 1.47906 * 110.99769 * 170.00057 * 18 17 16 23 23 N 1.28715 * 108.26587 * 359.97438 * 15 14 13 24 24 N 1.28634 * 110.17527 * 0.02562 * 23 15 14 25 25 H 0.97005 * 119.99655 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99199 * 359.97438 * 11 9 7 27 27 H 1.09003 * 109.46691 * 59.99459 * 12 11 9 28 28 H 1.09000 * 109.47341 * 300.00465 * 12 11 9 29 29 H 1.07999 * 126.91072 * 0.26879 * 14 13 12 30 30 H 1.09000 * 109.46769 * 244.99935 * 16 15 14 31 31 H 1.09000 * 109.47210 * 4.99330 * 16 15 14 32 32 H 1.09000 * 109.47291 * 299.99783 * 17 16 15 33 33 H 1.09001 * 109.46950 * 59.99903 * 17 16 15 34 34 H 1.08999 * 110.67082 * 278.15686 * 19 18 17 35 35 H 1.09001 * 110.66881 * 41.28633 * 19 18 17 36 36 H 1.09005 * 110.72387 * 204.22880 * 20 19 18 37 37 H 1.08998 * 110.87693 * 81.01925 * 20 19 18 38 38 H 1.08994 * 110.31406 * 263.04069 * 21 20 19 39 39 H 1.08999 * 110.30420 * 140.87166 * 21 20 19 40 40 H 1.09000 * 109.91584 * 333.51075 * 22 18 17 41 41 H 1.08996 * 109.91226 * 94.61068 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4120 0.5920 7 6 2.0070 -1.2129 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4826 -0.1388 11 7 1.9610 -3.6341 -0.2602 12 6 1.2349 -4.8992 -0.3960 13 6 2.2198 -6.0333 -0.5173 14 6 2.6771 -6.8193 0.4852 15 7 3.5371 -7.6949 -0.0847 16 6 4.2811 -8.7457 0.6143 17 6 3.9945 -10.0971 -0.0433 18 7 4.7409 -11.1506 0.6573 19 6 4.4776 -11.1078 2.1185 20 6 4.8783 -12.5273 2.5927 21 6 4.4024 -13.4276 1.4295 22 6 4.3103 -12.4928 0.2091 23 7 3.5883 -7.4465 -1.3466 24 7 2.8142 -6.4610 -1.6367 25 1 -0.4850 0.8401 0.0004 26 1 2.9310 -3.6293 -0.2589 27 1 0.6091 -4.8649 -1.2879 28 1 0.6077 -5.0543 0.4819 29 1 2.4068 -6.7620 1.5293 30 1 5.3487 -8.5335 0.5583 31 1 3.9711 -8.7768 1.6589 32 1 2.9268 -10.3093 0.0127 33 1 4.3045 -10.0659 -1.0878 34 1 5.0985 -10.3519 2.5993 35 1 3.4217 -10.9207 2.3138 36 1 4.3610 -12.7856 3.5168 37 1 5.9578 -12.6032 2.7225 38 1 3.4243 -13.8522 1.6554 39 1 5.1266 -14.2209 1.2445 40 1 3.2821 -12.4519 -0.1506 41 1 4.9674 -12.8477 -0.5847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335464962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:21 Heat of formation + Delta-G solvation = 37.399897 kcal Electronic energy + Delta-G solvation = -22353.315524 eV Core-core repulsion = 18883.222274 eV Total energy + Delta-G solvation = -3470.093250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.35206 -40.04128 -39.35831 -36.55785 -35.34483 -34.46930 -33.24262 -32.22241 -30.08091 -29.32352 -28.79932 -26.79687 -25.16361 -23.06126 -22.48193 -21.79753 -21.73396 -21.30811 -19.37776 -18.34506 -17.62576 -17.35530 -16.98820 -16.71648 -16.14603 -15.98484 -15.89860 -15.65894 -15.21124 -14.94592 -14.47406 -14.12819 -14.05146 -13.77210 -13.45026 -13.11777 -13.02863 -12.83839 -12.70395 -12.63116 -12.57560 -12.38142 -12.18324 -12.05037 -11.98733 -11.77355 -11.45396 -11.11938 -10.91671 -10.46327 -9.80472 -9.55655 -9.50155 -8.28636 -6.83516 0.53269 1.27273 1.32148 1.42200 1.43416 1.59078 2.27422 2.48362 2.93181 3.13445 3.33463 3.39720 3.61533 3.65607 3.71734 3.84816 3.92056 4.06549 4.11096 4.13822 4.31076 4.32535 4.52903 4.58750 4.64568 4.69255 4.77198 4.89855 4.94216 4.94786 5.02996 5.06709 5.18517 5.28416 5.34120 5.54613 5.78579 5.87863 5.88507 6.16919 6.26989 6.88258 7.41946 7.51701 8.48577 8.67807 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039491 B = 0.002283 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.855900 B =12259.015799 C =12374.964605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.572 4.572 8 H 0.085 0.915 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.749 5.749 12 C 0.224 3.776 13 C -0.045 4.045 14 C -0.008 4.008 15 N -0.282 5.282 16 C 0.114 3.886 17 C 0.044 3.956 18 N -0.520 5.520 19 C 0.018 3.982 20 C -0.122 4.122 21 C -0.131 4.131 22 C 0.031 3.969 23 N -0.104 5.104 24 N -0.294 5.294 25 H 0.275 0.725 26 H 0.392 0.608 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 -25.670 8.377 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.609 4.609 8 H 0.103 0.897 9 C 0.346 3.654 10 O -0.517 6.517 11 N -0.403 5.403 12 C 0.098 3.902 13 C -0.184 4.184 14 C -0.160 4.160 15 N -0.076 5.076 16 C -0.005 4.005 17 C -0.086 4.086 18 N -0.245 5.245 19 C -0.109 4.109 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.096 4.096 23 N -0.083 5.083 24 N -0.161 5.161 25 H 0.085 0.915 26 H 0.224 0.776 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.249 0.751 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.568 -25.982 6.904 29.676 hybrid contribution -0.918 0.770 0.686 1.380 sum 11.651 -25.212 7.590 28.792 Atomic orbital electron populations 1.70184 1.09462 1.28998 1.36262 1.26966 0.95549 1.04891 0.91230 0.85001 0.78945 0.75203 0.79088 1.19073 1.19457 1.17179 1.21389 0.95123 0.90223 1.54166 0.89659 1.18570 0.86760 0.83928 0.76156 1.90555 1.16003 1.87392 1.57746 1.45828 1.09114 1.05089 1.80304 1.18901 0.90703 0.79823 1.00765 1.21937 1.04182 1.01869 0.90365 1.23909 0.96126 0.93404 1.02590 1.47582 1.29450 1.24157 1.06403 1.22465 0.98046 0.83137 0.96901 1.22366 0.96517 0.90122 0.99551 1.64847 1.52693 1.02277 1.04667 1.23520 1.00341 0.99521 0.87560 1.22485 1.02174 0.93229 0.98099 1.22416 1.02319 0.98127 0.94006 1.22945 0.99228 0.88496 0.98957 1.78199 1.19462 1.13630 0.97050 1.75071 1.07784 1.06751 1.26494 0.91480 0.77566 0.94160 0.90693 0.75053 0.86392 0.84341 0.94210 0.90378 0.88281 0.92910 0.89708 0.90504 0.90892 0.90203 0.93942 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.59 11.85 21.84 0.26 -50.33 16 2 C 0.03 1.63 5.49 85.30 0.47 2.10 16 3 Si 1.00 41.52 29.56 68.60 2.03 43.55 16 4 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.57 -33.05 9.53 24.83 0.24 -32.82 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.54 32.06 7.74 86.36 0.67 32.73 16 10 O -0.63 -42.63 15.05 -4.33 -0.07 -42.70 16 11 N -0.75 -35.24 5.54 -471.15 -2.61 -37.85 16 12 C 0.22 9.16 6.23 85.63 0.53 9.69 16 13 C -0.05 -1.51 6.62 41.60 0.28 -1.23 16 14 C -0.01 -0.19 11.50 83.49 0.96 0.77 16 15 N -0.28 -6.27 3.44 -347.73 -1.20 -7.47 16 16 C 0.11 1.45 6.11 86.38 0.53 1.98 16 17 C 0.04 0.62 5.15 86.30 0.44 1.07 16 18 N -0.52 -6.26 5.40 -883.00 -4.76 -11.03 16 19 C 0.02 0.14 5.10 86.65 0.44 0.58 16 20 C -0.12 -0.84 7.06 31.80 0.22 -0.62 16 21 C -0.13 -1.03 6.93 31.47 0.22 -0.81 16 22 C 0.03 0.35 6.70 86.45 0.58 0.93 16 23 N -0.10 -3.22 12.91 37.02 0.48 -2.74 16 24 N -0.29 -10.87 12.41 -48.60 -0.60 -11.47 16 25 H 0.28 15.32 8.29 -92.70 -0.77 14.55 16 26 H 0.39 16.70 8.44 -92.71 -0.78 15.91 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.23 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.14 0.86 6.72 -2.39 -0.02 0.85 16 32 H 0.04 0.61 7.81 -2.39 -0.02 0.59 16 33 H 0.08 1.42 8.12 -2.39 -0.02 1.40 16 34 H 0.10 0.55 7.66 -2.39 -0.02 0.53 16 35 H 0.05 0.40 8.00 -2.39 -0.02 0.38 16 36 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.04 0.51 7.57 -2.39 -0.02 0.50 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -82.53 345.32 -0.64 -83.17 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.26 Total: 22.48 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.58 Total: 14.38 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -8.44 Total: -120.89 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.07 Total: -42.70 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -82.53 -0.64 -83.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335464962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.573 kcal (2) G-P(sol) polarization free energy of solvation -82.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds