Wall clock time and date at job start Tue Mar 31 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99758 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00035 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.35352 * 126.75361 * 94.71485 * 13 12 11 15 15 N 1.35317 * 106.17693 * 179.84844 * 14 13 12 16 16 C 1.46491 * 125.87029 * 180.18381 * 15 14 13 17 17 C 1.53000 * 109.47242 * 125.29424 * 16 15 14 18 18 C 1.53122 * 109.52388 * 294.87372 * 17 16 15 19 19 C 1.53040 * 109.27449 * 182.50443 * 18 17 16 20 20 N 1.46849 * 109.57552 * 59.08322 * 19 18 17 21 21 C 1.46845 * 111.20044 * 298.28810 * 20 19 18 22 22 C 1.53035 * 109.52108 * 61.74217 * 21 20 19 23 23 N 1.28721 * 108.25949 * 0.41126 * 15 14 13 24 24 N 1.28636 * 110.17920 * 359.73997 * 23 15 14 25 25 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 27 27 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 28 28 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 29 29 H 1.08002 * 126.90994 * 359.97438 * 14 13 12 30 30 H 1.08997 * 109.47170 * 245.29472 * 16 15 14 31 31 H 1.08999 * 109.46977 * 5.29533 * 16 15 14 32 32 H 1.08999 * 109.52293 * 55.00219 * 17 16 15 33 33 H 1.09000 * 109.49735 * 302.38308 * 18 17 16 34 34 H 1.08997 * 109.50045 * 62.49898 * 18 17 16 35 35 H 1.09005 * 109.41176 * 299.06506 * 19 18 17 36 36 H 1.09001 * 109.45137 * 179.12867 * 19 18 17 37 37 H 1.00900 * 111.00051 * 62.38857 * 20 19 18 38 38 H 1.09007 * 109.46094 * 301.73086 * 21 20 19 39 39 H 1.08999 * 109.45613 * 181.75464 * 21 20 19 40 40 H 1.09004 * 109.50207 * 180.88071 * 22 21 20 41 41 H 1.08998 * 109.53703 * 60.78178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 6 2.1959 -6.0618 -0.0111 14 6 2.6545 -6.7405 1.0664 15 7 3.5049 -7.6778 0.5876 16 6 4.2438 -8.6561 1.3894 17 6 3.9492 -10.0658 0.8727 18 6 2.4711 -10.3953 1.0990 19 6 2.1966 -11.8285 0.6377 20 7 3.0463 -12.7592 1.3914 21 6 4.4701 -12.4918 1.1512 22 6 4.8128 -11.0790 1.6293 23 7 3.5566 -7.5590 -0.6930 24 7 2.7872 -6.6040 -1.0815 25 1 -0.4850 0.8400 -0.0004 26 1 2.9190 -3.6476 0.0002 27 1 0.5899 -4.9784 0.8842 28 1 0.5898 -4.9699 -0.8957 29 1 2.3926 -6.5697 2.1002 30 1 5.3125 -8.4567 1.3117 31 1 3.9346 -8.5793 2.4318 32 1 4.1752 -10.1180 -0.1923 33 1 2.2362 -10.3039 2.1594 34 1 1.8525 -9.7033 0.5276 35 1 2.4176 -11.9152 -0.4262 36 1 1.1484 -12.0714 0.8118 37 1 2.8334 -12.7258 2.3771 38 1 4.6805 -12.5753 0.0849 39 1 5.0730 -13.2166 1.6982 40 1 5.8661 -10.8751 1.4365 41 1 4.6162 -10.9982 2.6983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336895652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:33 Heat of formation + Delta-G solvation = 49.614194 kcal Electronic energy + Delta-G solvation = -22781.761295 eV Core-core repulsion = 19312.197697 eV Total energy + Delta-G solvation = -3469.563599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.21106 -39.50085 -37.26020 -35.46808 -33.63529 -32.37216 -32.12625 -31.33413 -30.70088 -27.59515 -26.92759 -25.02168 -23.57561 -23.35872 -21.76720 -21.25834 -20.31383 -19.62102 -17.61986 -17.02134 -16.65663 -16.37044 -15.31759 -15.17135 -14.93850 -14.88443 -14.70293 -14.43957 -13.96367 -13.83895 -13.39409 -13.31922 -12.80469 -12.59949 -12.44902 -12.16101 -11.92550 -11.75738 -11.57735 -11.33171 -11.16882 -11.09325 -10.92534 -10.89971 -10.57236 -10.42883 -10.23989 -10.01550 -9.18873 -8.88240 -8.81883 -7.58644 -7.48686 -6.15728 -4.60992 1.63050 2.25863 2.63634 3.18218 3.22907 3.25140 3.76872 3.92131 4.14242 4.14991 4.25185 4.39759 4.57046 4.58297 4.62536 4.76284 4.84835 4.90295 4.97304 5.01441 5.16507 5.18106 5.27232 5.30221 5.36619 5.47853 5.55093 5.56966 5.62264 5.79802 5.86097 6.12912 6.44321 6.51415 6.52723 6.59392 6.88717 7.46309 7.94495 8.09623 8.35548 8.62608 9.05195 9.55288 10.62514 10.80771 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043405 B = 0.002507 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.936025 B =11165.036280 C =11471.587974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.761 5.761 12 C 0.216 3.784 13 C -0.017 4.017 14 C -0.041 4.041 15 N -0.294 5.294 16 C 0.122 3.878 17 C -0.100 4.100 18 C -0.154 4.154 19 C 0.058 3.942 20 N -0.686 5.686 21 C 0.058 3.942 22 C -0.150 4.150 23 N -0.090 5.090 24 N -0.255 5.255 25 H 0.269 0.731 26 H 0.381 0.619 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.189 0.811 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.340 0.660 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 -23.263 7.304 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.090 3.910 13 C -0.155 4.155 14 C -0.192 4.192 15 N -0.087 5.087 16 C 0.000 4.000 17 C -0.119 4.119 18 C -0.193 4.193 19 C -0.071 4.071 20 N -0.315 5.315 21 C -0.072 4.072 22 C -0.190 4.190 23 N -0.069 5.069 24 N -0.122 5.122 25 H 0.079 0.921 26 H 0.212 0.788 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.583 -24.235 5.528 26.641 hybrid contribution 0.759 2.046 1.676 2.752 sum 10.342 -22.189 7.205 25.519 Atomic orbital electron populations 1.70004 1.07025 1.27355 1.35305 1.25699 0.94624 1.00237 0.92643 0.86430 0.79807 0.81048 0.79423 1.19277 1.20562 1.19347 1.20827 0.93536 0.89304 1.54419 0.91522 1.18206 0.87181 0.82223 0.76305 1.90603 1.14018 1.86718 1.55014 1.46157 1.08638 1.04135 1.82834 1.19047 0.90264 0.79710 1.02010 1.22350 1.02974 1.01454 0.88755 1.23445 0.98741 0.95013 1.02016 1.47285 1.30555 1.24132 1.06752 1.22159 0.97010 0.86583 0.94227 1.21515 0.96243 0.91993 1.02192 1.22321 0.95644 0.99460 1.01883 1.22003 0.97615 0.88560 0.98964 1.60632 1.04132 1.52688 1.14001 1.22019 0.89078 0.94008 1.02113 1.22267 1.00223 0.96451 1.00060 1.78248 1.19486 1.16547 0.92667 1.75134 1.06659 1.04307 1.26115 0.92052 0.78803 0.91551 0.91455 0.79396 0.88398 0.87925 0.88975 0.91715 0.91227 0.90649 0.90396 0.84203 0.90619 0.90333 0.90688 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.83 55.55 0.66 -22.58 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -15.61 9.54 -35.63 -0.34 -15.95 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 16.10 7.75 -12.99 -0.10 16.00 16 10 O -0.58 -18.95 15.02 5.20 0.08 -18.87 16 11 N -0.76 -17.67 5.54 -62.90 -0.35 -18.02 16 12 C 0.22 4.33 6.23 -5.19 -0.03 4.30 16 13 C -0.02 -0.29 6.61 -82.78 -0.55 -0.84 16 14 C -0.04 -0.53 11.50 -17.04 -0.20 -0.72 16 15 N -0.29 -3.44 2.95 -61.27 -0.18 -3.62 16 16 C 0.12 0.86 5.85 -4.05 -0.02 0.83 16 17 C -0.10 -0.66 2.30 -90.49 -0.21 -0.87 16 18 C -0.15 -1.10 5.23 -26.65 -0.14 -1.24 16 19 C 0.06 0.41 6.55 -3.83 -0.03 0.38 16 20 N -0.69 -4.27 6.87 -113.81 -0.78 -5.05 16 21 C 0.06 0.30 6.55 -3.84 -0.03 0.28 16 22 C -0.15 -0.68 5.36 -26.65 -0.14 -0.82 16 23 N -0.09 -1.39 12.82 60.35 0.77 -0.61 16 24 N -0.25 -4.62 12.41 33.29 0.41 -4.21 16 25 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 26 H 0.38 8.13 8.44 -40.82 -0.34 7.79 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.19 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.09 0.80 8.00 -51.93 -0.42 0.38 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.68 7.83 -51.93 -0.41 0.28 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.34 1.71 8.86 -39.29 -0.35 1.36 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -36.50 344.13 -7.23 -43.73 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.13 Total: 4.98 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.88 Total: 3.72 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.53 Total: -54.10 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.08 Total: -18.87 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.50 -7.23 -43.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336895652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.345 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds