Wall clock time and date at job start Tue Mar 31 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99758 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00035 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.35352 * 126.75361 * 94.71485 * 13 12 11 15 15 N 1.35317 * 106.17693 * 179.84844 * 14 13 12 16 16 C 1.46491 * 125.87029 * 180.18381 * 15 14 13 17 17 C 1.53000 * 109.47242 * 125.29424 * 16 15 14 18 18 C 1.53122 * 109.52388 * 294.87372 * 17 16 15 19 19 C 1.53040 * 109.27449 * 182.50443 * 18 17 16 20 20 N 1.46849 * 109.57552 * 59.08322 * 19 18 17 21 21 C 1.46845 * 111.20044 * 298.28810 * 20 19 18 22 22 C 1.53035 * 109.52108 * 61.74217 * 21 20 19 23 23 N 1.28721 * 108.25949 * 0.41126 * 15 14 13 24 24 N 1.28636 * 110.17920 * 359.73997 * 23 15 14 25 25 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 27 27 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 28 28 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 29 29 H 1.08002 * 126.90994 * 359.97438 * 14 13 12 30 30 H 1.08997 * 109.47170 * 245.29472 * 16 15 14 31 31 H 1.08999 * 109.46977 * 5.29533 * 16 15 14 32 32 H 1.08999 * 109.52293 * 55.00219 * 17 16 15 33 33 H 1.09000 * 109.49735 * 302.38308 * 18 17 16 34 34 H 1.08997 * 109.50045 * 62.49898 * 18 17 16 35 35 H 1.09005 * 109.41176 * 299.06506 * 19 18 17 36 36 H 1.09001 * 109.45137 * 179.12867 * 19 18 17 37 37 H 1.00900 * 111.00051 * 62.38857 * 20 19 18 38 38 H 1.09007 * 109.46094 * 301.73086 * 21 20 19 39 39 H 1.08999 * 109.45613 * 181.75464 * 21 20 19 40 40 H 1.09004 * 109.50207 * 180.88071 * 22 21 20 41 41 H 1.08998 * 109.53703 * 60.78178 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 6 2.1959 -6.0618 -0.0111 14 6 2.6545 -6.7405 1.0664 15 7 3.5049 -7.6778 0.5876 16 6 4.2438 -8.6561 1.3894 17 6 3.9492 -10.0658 0.8727 18 6 2.4711 -10.3953 1.0990 19 6 2.1966 -11.8285 0.6377 20 7 3.0463 -12.7592 1.3914 21 6 4.4701 -12.4918 1.1512 22 6 4.8128 -11.0790 1.6293 23 7 3.5566 -7.5590 -0.6930 24 7 2.7872 -6.6040 -1.0815 25 1 -0.4850 0.8400 -0.0004 26 1 2.9190 -3.6476 0.0002 27 1 0.5899 -4.9784 0.8842 28 1 0.5898 -4.9699 -0.8957 29 1 2.3926 -6.5697 2.1002 30 1 5.3125 -8.4567 1.3117 31 1 3.9346 -8.5793 2.4318 32 1 4.1752 -10.1180 -0.1923 33 1 2.2362 -10.3039 2.1594 34 1 1.8525 -9.7033 0.5276 35 1 2.4176 -11.9152 -0.4262 36 1 1.1484 -12.0714 0.8118 37 1 2.8334 -12.7258 2.3771 38 1 4.6805 -12.5753 0.0849 39 1 5.0730 -13.2166 1.6982 40 1 5.8661 -10.8751 1.4365 41 1 4.6162 -10.9982 2.6983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336895652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:32 Heat of formation + Delta-G solvation = 19.936744 kcal Electronic energy + Delta-G solvation = -22783.048206 eV Core-core repulsion = 19312.197697 eV Total energy + Delta-G solvation = -3470.850509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.33558 -40.03750 -39.35793 -36.44303 -35.33532 -34.47249 -32.97182 -32.20262 -31.82418 -29.02725 -28.15017 -26.79576 -24.23142 -23.90778 -22.91117 -22.18933 -21.66793 -20.98779 -19.37585 -18.18273 -17.64752 -17.38532 -17.00186 -16.20977 -16.02640 -15.96053 -15.64813 -15.41312 -15.32299 -15.18244 -14.54059 -14.35914 -14.05719 -13.57756 -13.41468 -13.27500 -13.12489 -13.00682 -12.78636 -12.66610 -12.59763 -12.39869 -12.23688 -12.04610 -11.83717 -11.59660 -11.41760 -11.04986 -10.91007 -10.44246 -9.81417 -9.51278 -9.35762 -8.28166 -6.85083 0.57438 1.31688 1.41240 1.41861 1.44782 1.56656 2.26946 2.47631 3.14252 3.28402 3.35748 3.42581 3.62179 3.62826 3.76940 3.84058 3.99533 4.10655 4.14932 4.24484 4.36687 4.39906 4.43912 4.53331 4.66338 4.75415 4.82097 4.91483 4.94964 4.95702 5.03001 5.08906 5.10013 5.30670 5.32475 5.64386 5.86755 6.03955 6.15830 6.25524 6.49865 6.87156 7.45306 7.50825 8.47997 8.67378 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043405 B = 0.002507 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.936025 B =11165.036280 C =11471.587974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.749 5.749 12 C 0.224 3.776 13 C -0.046 4.046 14 C -0.012 4.012 15 N -0.276 5.276 16 C 0.110 3.890 17 C -0.095 4.095 18 C -0.148 4.148 19 C 0.061 3.939 20 N -0.693 5.693 21 C 0.056 3.944 22 C -0.139 4.139 23 N -0.104 5.104 24 N -0.298 5.298 25 H 0.275 0.725 26 H 0.391 0.609 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.229 0.771 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.350 0.650 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.627 -23.612 9.646 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.609 4.609 8 H 0.103 0.897 9 C 0.345 3.655 10 O -0.517 6.517 11 N -0.403 5.403 12 C 0.098 3.902 13 C -0.184 4.184 14 C -0.164 4.164 15 N -0.069 5.069 16 C -0.009 4.009 17 C -0.114 4.114 18 C -0.187 4.187 19 C -0.069 4.069 20 N -0.322 5.322 21 C -0.074 4.074 22 C -0.179 4.179 23 N -0.083 5.083 24 N -0.165 5.165 25 H 0.085 0.915 26 H 0.224 0.776 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.246 0.754 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.169 0.831 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.173 -24.661 7.871 28.606 hybrid contribution -0.002 1.963 0.975 2.192 sum 12.170 -22.699 8.846 27.233 Atomic orbital electron populations 1.70168 1.09466 1.29087 1.36226 1.26970 0.95564 1.04895 0.91205 0.85061 0.78204 0.74717 0.80229 1.18221 1.19739 1.17586 1.21363 0.94624 0.90043 1.54892 0.89712 1.18571 0.86825 0.84013 0.76060 1.90556 1.15996 1.87822 1.57310 1.45829 1.09065 1.04176 1.81261 1.18883 0.90760 0.79599 1.00927 1.21901 1.04263 1.01991 0.90273 1.23848 0.96778 0.93252 1.02550 1.47656 1.29466 1.23847 1.05961 1.22718 0.97632 0.85319 0.95224 1.21450 0.96249 0.92606 1.01112 1.22261 0.95578 0.98589 1.02309 1.21898 0.97882 0.88909 0.98163 1.60602 1.04596 1.52407 1.14593 1.22059 0.88638 0.95074 1.01620 1.22201 1.00256 0.94813 1.00627 1.78160 1.19463 1.16124 0.94553 1.75069 1.08060 1.05704 1.27643 0.91460 0.77615 0.90889 0.94309 0.75449 0.86634 0.84298 0.91562 0.89950 0.94272 0.92444 0.90429 0.83127 0.92025 0.88869 0.89539 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.70 11.83 21.84 0.26 -50.44 16 2 C 0.03 1.63 5.50 85.31 0.47 2.10 16 3 Si 1.00 41.40 29.56 68.60 2.03 43.42 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.57 -33.13 9.54 24.83 0.24 -32.89 16 8 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.54 32.16 7.75 86.36 0.67 32.83 16 10 O -0.63 -42.80 15.02 -4.33 -0.06 -42.87 16 11 N -0.75 -35.44 5.54 -471.15 -2.61 -38.05 16 12 C 0.22 9.26 6.23 85.63 0.53 9.79 16 13 C -0.05 -1.53 6.61 41.60 0.28 -1.26 16 14 C -0.01 -0.28 11.50 83.49 0.96 0.68 16 15 N -0.28 -5.89 2.95 -347.75 -1.03 -6.92 16 16 C 0.11 1.16 5.85 86.38 0.51 1.67 16 17 C -0.09 -1.05 2.30 -10.71 -0.02 -1.07 16 18 C -0.15 -1.90 5.23 30.65 0.16 -1.74 16 19 C 0.06 0.82 6.55 86.33 0.57 1.39 16 20 N -0.69 -7.47 6.87 -513.99 -3.53 -11.00 16 21 C 0.06 0.47 6.55 86.33 0.57 1.03 16 22 C -0.14 -0.80 5.36 30.65 0.16 -0.64 16 23 N -0.10 -3.15 12.82 37.02 0.47 -2.68 16 24 N -0.30 -11.01 12.41 -48.60 -0.60 -11.61 16 25 H 0.28 15.40 8.29 -92.71 -0.77 14.63 16 26 H 0.39 16.77 8.44 -92.71 -0.78 15.98 16 27 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.23 3.37 8.06 -2.91 -0.02 3.34 16 30 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.14 0.56 8.07 -2.39 -0.02 0.54 16 32 H 0.07 1.11 8.00 -2.39 -0.02 1.09 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 0.75 7.83 -2.39 -0.02 0.73 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.35 2.64 8.86 -89.69 -0.79 1.84 16 38 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 41 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -83.81 344.13 -0.52 -84.32 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.52 Total: 23.93 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.08 Total: 11.89 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -7.04 Total: -120.70 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.06 Total: -42.87 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -83.81 -0.52 -84.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336895652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.258 kcal (2) G-P(sol) polarization free energy of solvation -83.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds