Wall clock time and date at job start Tue Mar 31 2020 03:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36454 * 127.13833 * 2 1 4 4 N 1.38576 * 126.47487 * 0.02562 * 3 2 1 5 5 C 1.47186 * 111.00087 * 171.97063 * 4 3 2 6 6 C 1.52974 * 108.73424 * 54.36694 * 5 4 3 7 7 N 1.46011 * 110.04585 * 50.29053 * 6 5 4 8 8 C 1.33722 * 122.92324 * 341.84356 * 7 6 5 9 9 O 1.21280 * 118.62017 * 181.68679 * 8 7 6 10 10 C 1.46907 * 110.99727 * 294.86020 * 4 3 2 11 11 N 1.31221 * 107.05020 * 179.87013 * 3 2 1 12 12 N 1.28522 * 109.86585 * 0.39951 * 11 3 2 13 13 C 1.30299 * 110.05206 * 359.74434 * 12 11 3 14 14 C 1.50694 * 126.35229 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47765 * 126.38427 * 14 13 12 16 16 C 1.53004 * 109.47068 * 246.39017 * 14 13 12 17 17 C 1.50702 * 109.46870 * 6.38266 * 14 13 12 18 18 H 1.08000 * 119.99785 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00039 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00230 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99927 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46988 * 60.00111 * 21 19 17 23 23 H 1.48499 * 109.46921 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47058 * 300.00015 * 21 19 17 25 25 H 1.08998 * 109.47231 * 264.14643 * 1 2 3 26 26 H 1.08997 * 109.47218 * 144.13989 * 1 2 3 27 27 H 1.09004 * 109.46818 * 24.14200 * 1 2 3 28 28 H 1.09006 * 109.59210 * 174.14223 * 5 4 3 29 29 H 1.09001 * 109.59382 * 294.58756 * 5 4 3 30 30 H 1.08994 * 109.37962 * 170.46799 * 6 5 4 31 31 H 1.09000 * 109.37440 * 290.23481 * 6 5 4 32 32 H 0.96993 * 118.53810 * 161.86183 * 7 6 5 33 33 H 1.08996 * 109.38724 * 47.08587 * 10 4 3 34 34 H 1.08999 * 109.38986 * 166.77659 * 10 4 3 35 35 H 1.09003 * 109.46574 * 60.00094 * 15 14 13 36 36 H 1.08999 * 109.47225 * 180.02562 * 15 14 13 37 37 H 1.08995 * 109.47046 * 300.00713 * 15 14 13 38 38 H 1.09001 * 109.47272 * 65.43763 * 16 14 13 39 39 H 1.08999 * 109.46881 * 185.43483 * 16 14 13 40 40 H 1.09001 * 109.46942 * 305.43283 * 16 14 13 41 41 H 0.97003 * 120.00575 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8978 2.4173 0.0005 5 6 3.0544 3.3071 0.1923 6 6 4.1076 2.9794 -0.8678 7 7 3.4938 2.9558 -2.1924 8 6 2.1750 2.8399 -2.3804 9 8 1.7515 2.7975 -3.5161 10 6 1.1957 2.7599 -1.2436 11 7 3.5212 0.6371 0.0028 12 7 3.5162 -0.6481 -0.0038 13 6 2.2905 -1.0901 -0.0058 14 6 1.8620 -2.5348 -0.0138 15 6 0.8970 -2.7871 1.1465 16 6 1.1625 -2.8521 -1.3371 17 6 3.0729 -3.4188 0.1387 18 1 4.0546 -2.9784 0.2325 19 6 2.9276 -4.7897 0.1586 20 7 1.7323 -5.3261 0.0439 21 14 4.4287 -5.8854 0.3483 22 1 5.1068 -5.5779 1.6332 23 1 4.0066 -7.3091 0.3391 24 1 5.3659 -5.6403 -0.7771 25 1 -0.3633 -0.1048 1.0223 26 1 -0.3633 -0.8328 -0.6020 27 1 -0.3633 0.9378 -0.4203 28 1 2.7388 4.3450 0.0854 29 1 3.4749 3.1512 1.1857 30 1 4.8909 3.7370 -0.8457 31 1 4.5428 2.0030 -0.6554 32 1 4.0683 3.0270 -2.9707 33 1 0.4506 1.9948 -1.4611 34 1 0.6992 3.7231 -1.1254 35 1 0.0212 -2.1477 1.0361 36 1 0.5875 -3.8322 1.1409 37 1 1.3954 -2.5611 2.0891 38 1 1.8771 -2.7658 -2.1556 39 1 0.7677 -3.8675 -1.3050 40 1 0.3444 -2.1489 -1.4932 41 1 1.6301 -6.2906 0.0575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338394809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:21 Heat of formation + Delta-G solvation = 79.988134 kcal Electronic energy + Delta-G solvation = -25155.065086 eV Core-core repulsion = 21686.818601 eV Total energy + Delta-G solvation = -3468.246486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.60849 -40.41644 -37.51817 -35.80521 -34.87473 -33.77573 -31.27086 -30.11272 -28.74338 -27.55039 -25.93211 -25.88880 -25.14192 -23.72998 -22.07394 -21.06325 -19.57456 -19.25815 -17.71523 -16.84266 -16.32486 -16.06042 -15.86697 -15.43791 -15.19008 -14.89744 -14.57435 -14.04115 -13.52479 -13.30869 -13.25970 -13.14750 -12.72986 -12.53956 -12.07932 -11.86977 -11.71036 -11.33044 -11.11337 -10.90815 -10.82061 -10.67201 -10.62277 -10.20657 -10.07285 -9.98757 -9.79172 -9.63222 -9.27204 -8.91553 -8.72480 -8.41587 -7.83903 -6.05021 -4.10480 2.23202 2.46453 2.60776 3.14926 3.35409 3.38020 3.44332 3.50537 3.80938 4.31466 4.42611 4.59893 4.73153 4.83451 4.89801 5.13266 5.24590 5.25303 5.31803 5.35656 5.52509 5.61584 5.73573 5.88516 6.15925 6.23547 6.51157 6.51961 6.60874 6.63013 6.70331 6.72854 7.09597 7.14004 7.18723 7.34579 7.48836 7.72134 7.79643 8.04839 8.06334 8.27574 8.95222 9.43935 9.56905 10.99036 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.004957 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.337761 B = 5647.140830 C = 5965.667928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.480 5.480 3 C 0.304 3.696 4 N -0.440 5.440 5 C 0.058 3.942 6 C 0.047 3.953 7 N -0.711 5.711 8 C 0.490 3.510 9 O -0.557 6.557 10 C 0.035 3.965 11 N -0.319 5.319 12 N -0.287 5.287 13 C 0.248 3.752 14 C 0.145 3.855 15 C -0.135 4.135 16 C -0.130 4.130 17 C -0.494 4.494 18 H 0.076 0.924 19 C 0.064 3.936 20 N -0.894 5.894 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.276 1.276 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.400 0.600 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.012 0.988 36 H 0.098 0.902 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.008 0.992 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 15.574 1.009 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.174 5.174 3 C -0.052 4.052 4 N -0.164 5.164 5 C -0.069 4.069 6 C -0.079 4.079 7 N -0.362 5.362 8 C 0.274 3.726 9 O -0.434 6.434 10 C -0.096 4.096 11 N -0.164 5.164 12 N -0.123 5.123 13 C -0.018 4.018 14 C 0.142 3.858 15 C -0.194 4.194 16 C -0.188 4.188 17 C -0.532 4.532 18 H 0.094 0.906 19 C -0.137 4.137 20 N -0.534 5.534 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.150 0.850 32 H 0.236 0.764 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.031 0.969 36 H 0.117 0.883 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.027 0.973 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.292 15.430 1.036 15.634 hybrid contribution 0.022 -0.448 -0.681 0.816 sum -2.270 14.982 0.355 15.157 Atomic orbital electron populations 1.22250 0.76357 1.04131 1.04185 1.46149 1.08332 1.05959 1.56971 1.22324 0.87888 0.86618 1.08404 1.59298 1.26337 0.97963 1.32783 1.22450 0.88262 0.95470 1.00746 1.22883 0.96636 1.07006 0.81342 1.45501 1.07095 1.73504 1.10149 1.20884 0.84130 0.76121 0.91423 1.90760 1.77728 1.50854 1.24092 1.22694 0.96380 1.05716 0.84791 1.74222 1.15060 1.05110 1.22001 1.74072 1.18164 1.00562 1.19523 1.26191 0.85261 0.92253 0.98143 1.16956 0.95949 0.79202 0.93656 1.21966 0.96021 1.04086 0.97293 1.21920 0.97250 1.02823 0.96813 1.21010 0.92744 0.90053 1.49427 0.90556 1.24866 0.96165 0.97843 0.94827 1.69771 1.21324 1.11405 1.50862 0.86491 0.82824 0.78839 0.78926 1.20192 1.21437 1.20181 0.90073 0.88537 0.90140 0.89036 0.87459 0.90367 0.85022 0.76402 0.86910 0.85705 0.96864 0.88345 0.95002 0.94636 0.88548 0.97308 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 9.13 59.85 0.55 1.56 16 2 N -0.48 -8.68 3.20 -121.46 -0.39 -9.06 16 3 C 0.30 5.21 6.31 -318.88 -2.01 3.20 16 4 N -0.44 -5.64 5.07 -175.91 -0.89 -6.53 16 5 C 0.06 0.59 5.85 -3.68 -0.02 0.57 16 6 C 0.05 0.52 6.57 -4.32 -0.03 0.50 16 7 N -0.71 -9.11 5.51 -61.07 -0.34 -9.45 16 8 C 0.49 7.19 7.39 -11.67 -0.09 7.11 16 9 O -0.56 -10.19 17.82 5.56 0.10 -10.09 16 10 C 0.03 0.41 5.59 -5.19 -0.03 0.38 16 11 N -0.32 -6.33 8.38 30.31 0.25 -6.07 16 12 N -0.29 -6.73 11.01 32.99 0.36 -6.36 16 13 C 0.25 5.51 6.34 -154.01 -0.98 4.54 16 14 C 0.15 3.41 0.52 -156.81 -0.08 3.33 16 15 C -0.14 -2.97 8.09 37.16 0.30 -2.67 16 16 C -0.13 -2.93 8.11 37.16 0.30 -2.63 16 17 C -0.49 -13.15 7.91 -34.44 -0.27 -13.42 16 18 H 0.08 2.14 6.96 -52.49 -0.37 1.78 16 19 C 0.06 1.67 5.15 -17.82 -0.09 1.58 16 20 N -0.89 -23.36 9.41 55.43 0.52 -22.83 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.08 1.01 7.63 -51.93 -0.40 0.62 16 26 H 0.10 1.36 5.29 -51.93 -0.27 1.08 16 27 H 0.08 0.87 5.58 -51.93 -0.29 0.58 16 28 H 0.09 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.13 1.95 5.06 -51.93 -0.26 1.69 16 32 H 0.40 4.79 8.84 -40.82 -0.36 4.43 16 33 H 0.11 1.39 5.42 -51.93 -0.28 1.11 16 34 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.01 0.23 5.52 -51.93 -0.29 -0.05 16 36 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 2.33 6.23 -51.93 -0.32 2.00 16 40 H 0.01 0.16 5.67 -51.93 -0.29 -0.13 16 41 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -31.92 313.59 -8.25 -40.16 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.12 Total: 5.39 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.45 Total: 4.04 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.48 Total: -60.31 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.10 Total: -10.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.92 -8.25 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338394809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.151 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds