Wall clock time and date at job start Tue Mar 31 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36454 * 127.13833 * 2 1 4 4 N 1.38576 * 126.47487 * 0.02562 * 3 2 1 5 5 C 1.47186 * 111.00087 * 171.97063 * 4 3 2 6 6 C 1.52974 * 108.73424 * 54.36694 * 5 4 3 7 7 N 1.46011 * 110.04585 * 50.29053 * 6 5 4 8 8 C 1.33722 * 122.92324 * 341.84356 * 7 6 5 9 9 O 1.21280 * 118.62017 * 181.68679 * 8 7 6 10 10 C 1.46907 * 110.99727 * 294.86020 * 4 3 2 11 11 N 1.31221 * 107.05020 * 179.87013 * 3 2 1 12 12 N 1.28522 * 109.86585 * 0.39951 * 11 3 2 13 13 C 1.30299 * 110.05206 * 359.74434 * 12 11 3 14 14 C 1.50694 * 126.35229 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47765 * 126.38427 * 14 13 12 16 16 C 1.53004 * 109.47068 * 246.39017 * 14 13 12 17 17 C 1.50702 * 109.46870 * 6.38266 * 14 13 12 18 18 H 1.08000 * 119.99785 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00039 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00230 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99927 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.46988 * 60.00111 * 21 19 17 23 23 H 1.48499 * 109.46921 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47058 * 300.00015 * 21 19 17 25 25 H 1.08998 * 109.47231 * 264.14643 * 1 2 3 26 26 H 1.08997 * 109.47218 * 144.13989 * 1 2 3 27 27 H 1.09004 * 109.46818 * 24.14200 * 1 2 3 28 28 H 1.09006 * 109.59210 * 174.14223 * 5 4 3 29 29 H 1.09001 * 109.59382 * 294.58756 * 5 4 3 30 30 H 1.08994 * 109.37962 * 170.46799 * 6 5 4 31 31 H 1.09000 * 109.37440 * 290.23481 * 6 5 4 32 32 H 0.96993 * 118.53810 * 161.86183 * 7 6 5 33 33 H 1.08996 * 109.38724 * 47.08587 * 10 4 3 34 34 H 1.08999 * 109.38986 * 166.77659 * 10 4 3 35 35 H 1.09003 * 109.46574 * 60.00094 * 15 14 13 36 36 H 1.08999 * 109.47225 * 180.02562 * 15 14 13 37 37 H 1.08995 * 109.47046 * 300.00713 * 15 14 13 38 38 H 1.09001 * 109.47272 * 65.43763 * 16 14 13 39 39 H 1.08999 * 109.46881 * 185.43483 * 16 14 13 40 40 H 1.09001 * 109.46942 * 305.43283 * 16 14 13 41 41 H 0.97003 * 120.00575 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8978 2.4173 0.0005 5 6 3.0544 3.3071 0.1923 6 6 4.1076 2.9794 -0.8678 7 7 3.4938 2.9558 -2.1924 8 6 2.1750 2.8399 -2.3804 9 8 1.7515 2.7975 -3.5161 10 6 1.1957 2.7599 -1.2436 11 7 3.5212 0.6371 0.0028 12 7 3.5162 -0.6481 -0.0038 13 6 2.2905 -1.0901 -0.0058 14 6 1.8620 -2.5348 -0.0138 15 6 0.8970 -2.7871 1.1465 16 6 1.1625 -2.8521 -1.3371 17 6 3.0729 -3.4188 0.1387 18 1 4.0546 -2.9784 0.2325 19 6 2.9276 -4.7897 0.1586 20 7 1.7323 -5.3261 0.0439 21 14 4.4287 -5.8854 0.3483 22 1 5.1068 -5.5779 1.6332 23 1 4.0066 -7.3091 0.3391 24 1 5.3659 -5.6403 -0.7771 25 1 -0.3633 -0.1048 1.0223 26 1 -0.3633 -0.8328 -0.6020 27 1 -0.3633 0.9378 -0.4203 28 1 2.7388 4.3450 0.0854 29 1 3.4749 3.1512 1.1857 30 1 4.8909 3.7370 -0.8457 31 1 4.5428 2.0030 -0.6554 32 1 4.0683 3.0270 -2.9707 33 1 0.4506 1.9948 -1.4611 34 1 0.6992 3.7231 -1.1254 35 1 0.0212 -2.1477 1.0361 36 1 0.5875 -3.8322 1.1409 37 1 1.3954 -2.5611 2.0891 38 1 1.8771 -2.7658 -2.1556 39 1 0.7677 -3.8675 -1.3050 40 1 0.3444 -2.1489 -1.4932 41 1 1.6301 -6.2906 0.0575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338394809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:20 Heat of formation + Delta-G solvation = 57.653733 kcal Electronic energy + Delta-G solvation = -25156.033579 eV Core-core repulsion = 21686.818601 eV Total energy + Delta-G solvation = -3469.214978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -44.02378 -41.53453 -38.69693 -37.52340 -36.13899 -35.03888 -33.15048 -31.16318 -30.11214 -28.78506 -27.71865 -27.20730 -26.88610 -24.75012 -23.64853 -22.34652 -21.00034 -20.59971 -18.82807 -18.07193 -17.78798 -17.47487 -17.17446 -16.79105 -16.74517 -16.32268 -15.67020 -15.26673 -15.09337 -14.77158 -14.50117 -14.21209 -14.01849 -13.87897 -13.49762 -13.19008 -13.07008 -12.97010 -12.69241 -12.52579 -12.48465 -12.20333 -12.11510 -11.94189 -11.81506 -11.77089 -11.33866 -10.99423 -10.72661 -10.51238 -10.36645 -9.92957 -9.23717 -8.04651 -6.14951 0.87006 1.29721 1.39509 1.45294 1.46126 1.54691 1.96550 2.11718 2.48055 2.69305 3.21826 3.34665 3.60127 3.70168 3.86474 3.92458 3.99431 4.25943 4.31731 4.36289 4.44848 4.55763 4.60865 4.74044 4.78944 4.83174 4.91507 4.96957 5.08790 5.12370 5.28002 5.39482 5.50711 5.60487 5.68556 5.79886 5.96395 6.06507 6.15816 6.26425 6.40320 6.87916 6.97701 7.50493 7.95515 8.96781 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023757 B = 0.004957 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.337761 B = 5647.140830 C = 5965.667928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.479 5.479 3 C 0.322 3.678 4 N -0.428 5.428 5 C 0.054 3.946 6 C 0.047 3.953 7 N -0.707 5.707 8 C 0.481 3.519 9 O -0.601 6.601 10 C 0.039 3.961 11 N -0.337 5.337 12 N -0.331 5.331 13 C 0.225 3.775 14 C 0.142 3.858 15 C -0.122 4.122 16 C -0.117 4.117 17 C -0.515 4.515 18 H 0.051 0.949 19 C 0.030 3.970 20 N -0.902 5.902 21 Si 0.946 3.054 22 H -0.278 1.278 23 H -0.278 1.278 24 H -0.283 1.283 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.401 0.599 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.017 0.983 38 H 0.011 0.989 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 17.952 1.657 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.173 5.173 3 C -0.035 4.035 4 N -0.153 5.153 5 C -0.072 4.072 6 C -0.078 4.078 7 N -0.357 5.357 8 C 0.267 3.733 9 O -0.483 6.483 10 C -0.091 4.091 11 N -0.182 5.182 12 N -0.168 5.168 13 C -0.043 4.043 14 C 0.139 3.861 15 C -0.180 4.180 16 C -0.176 4.176 17 C -0.553 4.553 18 H 0.069 0.931 19 C -0.169 4.169 20 N -0.541 5.541 21 Si 0.773 3.227 22 H -0.204 1.204 23 H -0.203 1.203 24 H -0.209 1.209 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.237 0.763 33 H 0.129 0.871 34 H 0.188 0.812 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.553 17.819 1.711 18.250 hybrid contribution 0.449 -1.044 -0.886 1.441 sum -3.104 16.775 0.825 17.080 Atomic orbital electron populations 1.22595 0.73837 1.05900 1.05534 1.46252 1.09736 1.05014 1.56271 1.22860 0.87095 0.88207 1.05333 1.59508 1.27205 0.95675 1.32877 1.22730 0.87173 0.96865 1.00443 1.22876 0.97835 1.06316 0.80762 1.45615 1.06898 1.72209 1.10999 1.21448 0.84875 0.75400 0.91592 1.90744 1.78522 1.53131 1.25874 1.22849 0.95372 1.07988 0.82878 1.74282 1.16614 1.03630 1.23630 1.73968 1.19619 1.02587 1.20642 1.25712 0.85878 0.92619 1.00129 1.16822 0.95070 0.80005 0.94241 1.21773 0.96819 1.03436 0.96013 1.21741 0.97458 1.02629 0.95763 1.21146 0.93121 0.91068 1.50014 0.93054 1.25364 0.98122 0.98604 0.94818 1.69846 1.21943 1.11506 1.50771 0.85800 0.80519 0.78053 0.78310 1.20390 1.20309 1.20853 0.88423 0.88908 0.86793 0.84790 0.87060 0.86713 0.88519 0.76306 0.87082 0.81215 0.93330 0.90397 0.96344 0.96954 0.90234 0.94187 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.52 9.13 127.77 1.17 2.69 16 2 N -0.48 -16.56 3.20 -538.19 -1.72 -18.28 16 3 C 0.32 10.48 6.31 260.11 1.64 12.12 16 4 N -0.43 -9.42 5.07 -710.47 -3.60 -13.02 16 5 C 0.05 0.90 5.85 86.24 0.50 1.40 16 6 C 0.05 0.94 6.57 86.46 0.57 1.51 16 7 N -0.71 -16.81 5.51 -466.10 -2.57 -19.38 16 8 C 0.48 13.07 7.39 87.68 0.65 13.72 16 9 O -0.60 -21.36 17.82 -3.03 -0.05 -21.41 16 10 C 0.04 0.77 5.59 85.42 0.48 1.25 16 11 N -0.34 -13.34 8.38 -58.00 -0.49 -13.82 16 12 N -0.33 -15.92 11.01 -49.54 -0.55 -16.46 16 13 C 0.23 10.06 6.34 137.63 0.87 10.93 16 14 C 0.14 6.73 0.52 -53.67 -0.03 6.70 16 15 C -0.12 -5.32 8.09 71.98 0.58 -4.74 16 16 C -0.12 -5.35 8.11 71.98 0.58 -4.77 16 17 C -0.51 -28.29 7.91 25.60 0.20 -28.09 16 18 H 0.05 3.02 6.96 -2.91 -0.02 3.00 16 19 C 0.03 1.62 5.15 84.66 0.44 2.06 16 20 N -0.90 -47.60 9.41 21.45 0.20 -47.40 16 21 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 25 H 0.10 2.08 7.63 -2.39 -0.02 2.07 16 26 H 0.09 2.34 5.29 -2.39 -0.01 2.33 16 27 H 0.11 2.00 5.58 -2.38 -0.01 1.98 16 28 H 0.13 1.19 8.08 -2.38 -0.02 1.17 16 29 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 2.79 5.06 -2.39 -0.01 2.78 16 32 H 0.40 9.19 8.84 -92.71 -0.82 8.37 16 33 H 0.11 2.31 5.42 -2.39 -0.01 2.30 16 34 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.71 5.52 -2.39 -0.01 1.70 16 36 H 0.08 3.73 6.07 -2.39 -0.01 3.71 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 3.88 6.23 -2.39 -0.01 3.86 16 40 H 0.04 1.52 5.67 -2.39 -0.01 1.50 16 41 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -72.80 313.59 1.17 -71.63 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.27 Total: 17.32 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.66 Total: 14.77 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -8.72 Total: -128.37 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.80 1.17 -71.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338394809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.282 kcal (2) G-P(sol) polarization free energy of solvation -72.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds