Wall clock time and date at job start Tue Mar 31 2020 03:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47478 * 270.00358 * 3 2 1 5 5 H 1.48504 * 109.47079 * 30.00982 * 3 2 1 6 6 H 1.48500 * 109.47136 * 150.00293 * 3 2 1 7 7 C 1.37884 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99299 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00227 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49818 * 59.93069 * 9 7 2 11 11 C 1.53117 * 109.50388 * 299.81041 * 9 7 2 12 12 C 1.53120 * 109.15822 * 182.40252 * 11 9 7 13 13 C 1.53042 * 109.27928 * 57.65214 * 12 11 9 14 14 N 1.46844 * 109.52269 * 300.82579 * 13 12 11 15 15 C 1.46900 * 110.99726 * 185.84084 * 14 13 12 16 16 C 1.50702 * 109.47574 * 45.78494 * 15 14 13 17 17 C 1.35349 * 126.75210 * 95.24533 * 16 15 14 18 18 N 1.35314 * 106.17386 * 180.12946 * 17 16 15 19 19 C 1.46499 * 125.86923 * 179.90800 * 18 17 16 20 20 C 1.50700 * 109.47257 * 124.71113 * 19 18 17 21 21 N 1.34777 * 119.99675 * 180.27849 * 20 19 18 22 22 O 1.21283 * 119.99803 * 359.97438 * 20 19 18 23 23 N 1.28719 * 108.26230 * 359.64160 * 18 17 16 24 24 N 1.28634 * 110.17694 * 0.22684 * 23 18 17 25 25 C 1.46843 * 111.20105 * 61.73823 * 14 13 12 26 26 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.52510 * 302.30734 * 11 9 7 28 28 H 1.08996 * 109.52454 * 62.49748 * 11 9 7 29 29 H 1.08999 * 109.50392 * 177.59351 * 12 11 9 30 30 H 1.09000 * 109.50399 * 297.71356 * 12 11 9 31 31 H 1.08996 * 109.46164 * 180.79970 * 13 12 11 32 32 H 1.09001 * 109.45543 * 60.83671 * 13 12 11 33 33 H 1.09004 * 109.46729 * 285.78294 * 15 14 13 34 34 H 1.09000 * 109.47319 * 165.78449 * 15 14 13 35 35 H 1.07999 * 126.91240 * 0.02562 * 17 16 15 36 36 H 1.09009 * 109.46700 * 4.71007 * 19 18 17 37 37 H 1.08998 * 109.46827 * 244.71582 * 19 18 17 38 38 H 0.97004 * 119.99652 * 179.72868 * 21 20 19 39 39 H 0.97000 * 119.99894 * 359.71837 * 21 20 19 40 40 H 1.08993 * 109.46313 * 58.27371 * 25 14 13 41 41 H 1.09007 * 109.45686 * 178.24297 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7003 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8895 11 6 0.3744 -2.5835 1.2521 12 6 -0.3412 -3.9369 1.2746 13 6 0.6987 -5.0591 1.2370 14 7 1.5111 -4.9348 0.0201 15 6 2.4281 -6.0740 -0.1193 16 6 1.6822 -7.3553 0.1508 17 6 1.1127 -8.1700 -0.7678 18 7 0.5572 -9.1903 -0.0739 19 6 -0.1756 -10.3210 -0.6491 20 6 0.4530 -11.6120 -0.1916 21 7 -0.0539 -12.7911 -0.6030 22 8 1.4183 -11.5897 0.5422 23 7 0.7881 -8.9996 1.1779 24 7 1.4571 -7.9137 1.3454 25 6 2.2448 -3.6630 -0.0010 26 1 -0.4850 0.8401 0.0004 27 1 0.9984 -2.4866 2.1406 28 1 -0.3635 -1.7815 1.2350 29 1 -0.9337 -4.0202 2.1857 30 1 -0.9949 -4.0174 0.4061 31 1 0.1920 -6.0241 1.2386 32 1 1.3433 -4.9862 2.1130 33 1 3.2454 -5.9719 0.5946 34 1 2.8306 -6.0946 -1.1320 35 1 1.1022 -8.0325 -1.8389 36 1 -0.1368 -10.2634 -1.7370 37 1 -1.2141 -10.2859 -0.3203 38 1 0.3531 -13.6220 -0.3117 39 1 -0.8258 -12.8088 -1.1902 40 1 2.8821 -3.5966 0.8806 41 1 2.8609 -3.6141 -0.8990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350655243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:18 Heat of formation + Delta-G solvation = 69.558365 kcal Electronic energy + Delta-G solvation = -23366.925317 eV Core-core repulsion = 19898.226562 eV Total energy + Delta-G solvation = -3468.698754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.26339 -39.91504 -38.10865 -34.91073 -34.32102 -33.71090 -32.08769 -30.61792 -29.71387 -28.88809 -26.10925 -24.85562 -22.87038 -22.38556 -21.66868 -21.05285 -20.30978 -18.46710 -18.27744 -17.79515 -16.70417 -16.45543 -16.10609 -15.60250 -14.98236 -14.81064 -14.52196 -14.27550 -14.06492 -13.50992 -13.25071 -13.03097 -12.82428 -12.34900 -11.97953 -11.82167 -11.50199 -11.23952 -10.92292 -10.87396 -10.67701 -10.59338 -10.56050 -10.31701 -10.13500 -9.85564 -9.72261 -9.38376 -9.15749 -8.90731 -8.62258 -8.23559 -7.55886 -5.91658 -3.97406 1.55986 1.96023 2.02178 2.64526 2.88796 3.35001 3.41614 3.45119 3.98859 4.17159 4.38858 4.42947 4.49360 4.77709 4.93305 5.17202 5.38543 5.50696 5.77352 5.92625 5.95596 6.13130 6.14185 6.24163 6.25053 6.42259 6.45064 6.51743 6.64327 6.66593 6.85551 6.86895 7.05205 7.31521 7.48371 7.60408 7.76391 7.81761 7.88884 8.15747 8.24853 8.55114 8.60427 9.06806 9.66487 11.14398 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048380 B = 0.002822 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.612324 B = 9919.954049 C =10055.997716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.067 3.933 14 N -0.533 5.533 15 C 0.136 3.864 16 C -0.002 4.002 17 C -0.038 4.038 18 N -0.293 5.293 19 C 0.100 3.900 20 C 0.505 3.495 21 N -0.851 5.851 22 O -0.507 6.507 23 N -0.063 5.063 24 N -0.259 5.259 25 C 0.067 3.933 26 H 0.259 0.741 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.192 0.808 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.409 0.591 39 H 0.404 0.596 40 H 0.022 0.978 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 -23.861 -6.068 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.061 4.061 14 N -0.259 5.259 15 C 0.006 3.994 16 C -0.138 4.138 17 C -0.188 4.188 18 N -0.087 5.087 19 C -0.027 4.027 20 C 0.286 3.714 21 N -0.417 5.417 22 O -0.380 6.380 23 N -0.042 5.042 24 N -0.128 5.128 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.209 0.791 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.240 0.760 39 H 0.232 0.768 40 H 0.040 0.960 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.630 -24.071 -4.561 24.766 hybrid contribution 0.744 0.724 -0.698 1.250 sum -2.886 -23.347 -5.259 24.105 Atomic orbital electron populations 1.69902 1.05838 1.26225 1.50821 1.24936 0.94817 0.98918 0.95219 0.86632 0.79882 0.83685 0.77998 1.20762 1.21339 1.20011 1.21163 0.92848 0.90670 1.50489 0.92803 1.18651 0.92605 0.90187 0.94830 0.94793 1.21648 1.00001 0.94674 0.98516 1.21679 0.97281 0.96609 0.99865 1.22028 0.95532 0.98480 0.90106 1.62223 1.23580 1.01643 1.38426 1.20379 0.92830 0.84710 1.01461 1.21914 1.03637 0.99275 0.89009 1.23314 1.03731 0.90986 1.00752 1.46651 1.38094 1.17611 1.06382 1.21743 0.97309 0.82560 1.01055 1.20367 0.84339 0.85674 0.81014 1.43694 1.36079 1.08082 1.53847 1.90913 1.25827 1.86916 1.34327 1.78378 1.15110 1.13173 0.97529 1.75157 1.12351 1.01926 1.23374 1.22336 0.96495 0.88165 0.98951 0.93132 0.95115 0.89236 0.93744 0.92464 0.92329 0.95544 0.93437 0.89371 0.79103 0.84612 0.85305 0.75959 0.76767 0.96014 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.36 55.43 0.63 -25.02 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.22 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.72 5.03 -26.61 -0.13 -2.85 16 12 C -0.12 -2.46 6.09 -26.65 -0.16 -2.62 16 13 C 0.07 1.33 4.91 -3.83 -0.02 1.31 16 14 N -0.53 -10.28 4.80 -236.12 -1.13 -11.41 16 15 C 0.14 2.19 5.84 -4.97 -0.03 2.16 16 16 C 0.00 -0.03 5.17 -82.78 -0.43 -0.46 16 17 C -0.04 -0.46 11.50 -17.05 -0.20 -0.66 16 18 N -0.29 -3.48 3.20 -62.44 -0.20 -3.68 16 19 C 0.10 0.57 6.94 -5.19 -0.04 0.53 16 20 C 0.50 3.85 8.11 -10.98 -0.09 3.77 16 21 N -0.85 -2.34 8.87 31.22 0.28 -2.07 16 22 O -0.51 -7.06 16.51 5.55 0.09 -6.97 16 23 N -0.06 -1.02 12.13 60.35 0.73 -0.29 16 24 N -0.26 -4.67 11.18 33.29 0.37 -4.29 16 25 C 0.07 1.46 4.65 -3.84 -0.02 1.44 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.14 5.80 -51.93 -0.30 0.84 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.19 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.14 0.18 8.07 -51.92 -0.42 -0.24 16 37 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.41 1.03 8.93 -40.82 -0.36 0.67 16 39 H 0.40 -0.42 8.83 -40.82 -0.36 -0.78 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.25 8.12 -51.92 -0.42 0.83 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -37.57 336.52 -6.84 -44.41 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.95 Total: -3.19 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.71 Total: -9.02 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.68 Total: -46.75 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: 0.09 Total: -6.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.57 -6.84 -44.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350655243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.970 kcal (2) G-P(sol) polarization free energy of solvation -37.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds