Wall clock time and date at job start Tue Mar 31 2020 03:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47478 * 270.00358 * 3 2 1 5 5 H 1.48504 * 109.47079 * 30.00982 * 3 2 1 6 6 H 1.48500 * 109.47136 * 150.00293 * 3 2 1 7 7 C 1.37884 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99299 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00227 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49818 * 59.93069 * 9 7 2 11 11 C 1.53117 * 109.50388 * 299.81041 * 9 7 2 12 12 C 1.53120 * 109.15822 * 182.40252 * 11 9 7 13 13 C 1.53042 * 109.27928 * 57.65214 * 12 11 9 14 14 N 1.46844 * 109.52269 * 300.82579 * 13 12 11 15 15 C 1.46900 * 110.99726 * 185.84084 * 14 13 12 16 16 C 1.50702 * 109.47574 * 45.78494 * 15 14 13 17 17 C 1.35349 * 126.75210 * 95.24533 * 16 15 14 18 18 N 1.35314 * 106.17386 * 180.12946 * 17 16 15 19 19 C 1.46499 * 125.86923 * 179.90800 * 18 17 16 20 20 C 1.50700 * 109.47257 * 124.71113 * 19 18 17 21 21 N 1.34777 * 119.99675 * 180.27849 * 20 19 18 22 22 O 1.21283 * 119.99803 * 359.97438 * 20 19 18 23 23 N 1.28719 * 108.26230 * 359.64160 * 18 17 16 24 24 N 1.28634 * 110.17694 * 0.22684 * 23 18 17 25 25 C 1.46843 * 111.20105 * 61.73823 * 14 13 12 26 26 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.52510 * 302.30734 * 11 9 7 28 28 H 1.08996 * 109.52454 * 62.49748 * 11 9 7 29 29 H 1.08999 * 109.50392 * 177.59351 * 12 11 9 30 30 H 1.09000 * 109.50399 * 297.71356 * 12 11 9 31 31 H 1.08996 * 109.46164 * 180.79970 * 13 12 11 32 32 H 1.09001 * 109.45543 * 60.83671 * 13 12 11 33 33 H 1.09004 * 109.46729 * 285.78294 * 15 14 13 34 34 H 1.09000 * 109.47319 * 165.78449 * 15 14 13 35 35 H 1.07999 * 126.91240 * 0.02562 * 17 16 15 36 36 H 1.09009 * 109.46700 * 4.71007 * 19 18 17 37 37 H 1.08998 * 109.46827 * 244.71582 * 19 18 17 38 38 H 0.97004 * 119.99652 * 179.72868 * 21 20 19 39 39 H 0.97000 * 119.99894 * 359.71837 * 21 20 19 40 40 H 1.08993 * 109.46313 * 58.27371 * 25 14 13 41 41 H 1.09007 * 109.45686 * 178.24297 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7003 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8895 11 6 0.3744 -2.5835 1.2521 12 6 -0.3412 -3.9369 1.2746 13 6 0.6987 -5.0591 1.2370 14 7 1.5111 -4.9348 0.0201 15 6 2.4281 -6.0740 -0.1193 16 6 1.6822 -7.3553 0.1508 17 6 1.1127 -8.1700 -0.7678 18 7 0.5572 -9.1903 -0.0739 19 6 -0.1756 -10.3210 -0.6491 20 6 0.4530 -11.6120 -0.1916 21 7 -0.0539 -12.7911 -0.6030 22 8 1.4183 -11.5897 0.5422 23 7 0.7881 -8.9996 1.1779 24 7 1.4571 -7.9137 1.3454 25 6 2.2448 -3.6630 -0.0010 26 1 -0.4850 0.8401 0.0004 27 1 0.9984 -2.4866 2.1406 28 1 -0.3635 -1.7815 1.2350 29 1 -0.9337 -4.0202 2.1857 30 1 -0.9949 -4.0174 0.4061 31 1 0.1920 -6.0241 1.2386 32 1 1.3433 -4.9862 2.1130 33 1 3.2454 -5.9719 0.5946 34 1 2.8306 -6.0946 -1.1320 35 1 1.1022 -8.0325 -1.8389 36 1 -0.1368 -10.2634 -1.7370 37 1 -1.2141 -10.2859 -0.3203 38 1 0.3531 -13.6220 -0.3117 39 1 -0.8258 -12.8088 -1.1902 40 1 2.8821 -3.5966 0.8806 41 1 2.8609 -3.6141 -0.8990 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350655243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:17 Heat of formation + Delta-G solvation = 38.003749 kcal Electronic energy + Delta-G solvation = -23368.293628 eV Core-core repulsion = 19898.226562 eV Total energy + Delta-G solvation = -3470.067065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.25553 -40.54199 -39.75840 -36.14907 -35.24819 -34.74835 -33.80498 -32.01240 -31.48712 -29.61684 -27.47070 -26.88243 -23.89992 -23.71943 -23.29293 -22.17724 -21.27164 -20.30942 -18.89956 -18.48812 -18.30790 -17.29191 -17.18486 -16.61931 -16.44475 -16.01509 -15.86070 -15.73801 -15.02564 -14.86427 -14.73302 -14.55888 -14.16976 -13.83404 -13.47053 -13.37934 -13.01546 -12.82260 -12.64769 -12.51509 -12.31138 -11.91914 -11.80539 -11.70152 -11.51434 -11.35827 -10.89739 -10.83933 -10.74348 -10.62915 -10.34512 -10.15962 -9.13310 -8.04470 -6.17878 0.65574 1.34856 1.44029 1.44828 1.44990 1.50771 1.55154 2.42371 2.46401 3.19169 3.22833 3.39262 3.74813 3.85466 3.95924 4.08625 4.19672 4.22277 4.29948 4.43908 4.53347 4.64599 4.67944 4.77180 4.92840 4.95400 5.00913 5.11936 5.17349 5.20552 5.38576 5.53780 5.61624 5.67109 5.81973 5.98570 6.13074 6.21695 6.29105 6.35657 6.48909 6.94460 7.23693 7.49608 7.55692 9.00550 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.048380 B = 0.002822 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.612324 B = 9919.954049 C =10055.997716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.005 0.995 11 C -0.103 4.103 12 C -0.108 4.108 13 C 0.080 3.920 14 N -0.532 5.532 15 C 0.140 3.860 16 C -0.036 4.036 17 C -0.012 4.012 18 N -0.283 5.283 19 C 0.088 3.912 20 C 0.502 3.498 21 N -0.824 5.824 22 O -0.582 6.582 23 N -0.098 5.098 24 N -0.306 5.306 25 C 0.080 3.920 26 H 0.260 0.740 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.035 0.965 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.191 0.809 37 H 0.160 0.840 38 H 0.412 0.588 39 H 0.425 0.575 40 H 0.011 0.989 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 -25.333 -8.281 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.023 0.977 11 C -0.142 4.142 12 C -0.146 4.146 13 C -0.049 4.049 14 N -0.257 5.257 15 C 0.011 3.989 16 C -0.174 4.174 17 C -0.163 4.163 18 N -0.077 5.077 19 C -0.035 4.035 20 C 0.285 3.715 21 N -0.390 5.390 22 O -0.460 6.460 23 N -0.077 5.077 24 N -0.173 5.173 25 C -0.047 4.047 26 H 0.069 0.931 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.256 0.744 36 H 0.208 0.792 37 H 0.177 0.823 38 H 0.244 0.756 39 H 0.258 0.742 40 H 0.029 0.971 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.223 -25.618 -6.803 26.841 hybrid contribution 0.822 1.036 -0.103 1.326 sum -3.401 -24.583 -6.906 25.760 Atomic orbital electron populations 1.70038 1.07166 1.27013 1.51347 1.25718 0.95657 1.02298 0.94856 0.85618 0.78630 0.79467 0.78289 1.19861 1.21106 1.19518 1.21526 0.93069 0.92058 1.50587 0.92868 1.18567 0.92934 0.91236 0.93626 0.97691 1.21473 0.99179 0.95823 0.97677 1.21581 0.97461 0.95059 1.00508 1.21856 0.94984 0.98088 0.89937 1.62171 1.24098 1.01761 1.37691 1.20408 0.91861 0.83836 1.02787 1.21963 1.05796 1.00020 0.89615 1.23946 1.00783 0.89389 1.02167 1.47063 1.36822 1.18520 1.05288 1.22426 0.97613 0.79552 1.03884 1.20748 0.83450 0.87267 0.80048 1.43524 1.35912 1.06923 1.52639 1.90900 1.29260 1.87947 1.37914 1.78276 1.16299 1.13140 0.99974 1.75078 1.13836 1.03125 1.25292 1.22047 0.95410 0.88266 0.99023 0.93107 0.96418 0.92141 0.92314 0.92637 0.91357 0.97108 0.94715 0.86366 0.74387 0.79231 0.82294 0.75610 0.74189 0.97082 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.83 11.36 21.45 0.24 -53.58 16 2 C 0.01 0.75 5.30 84.66 0.45 1.20 16 3 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.53 -29.98 8.56 25.60 0.22 -29.76 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.06 2.86 2.26 -11.49 -0.03 2.84 16 10 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 11 C -0.10 -5.24 5.03 30.67 0.15 -5.08 16 12 C -0.11 -4.61 6.09 30.65 0.19 -4.42 16 13 C 0.08 3.17 4.91 86.33 0.42 3.59 16 14 N -0.53 -20.12 4.80 -900.94 -4.32 -24.44 16 15 C 0.14 4.33 5.84 85.56 0.50 4.83 16 16 C -0.04 -1.09 5.17 41.60 0.22 -0.87 16 17 C -0.01 -0.25 11.50 83.49 0.96 0.71 16 18 N -0.28 -5.96 3.20 -351.46 -1.12 -7.09 16 19 C 0.09 0.65 6.94 85.63 0.59 1.24 16 20 C 0.50 6.52 8.11 87.66 0.71 7.23 16 21 N -0.82 -2.11 8.87 -173.53 -1.54 -3.65 16 22 O -0.58 -16.08 16.51 -3.04 -0.05 -16.13 16 23 N -0.10 -3.14 12.13 37.02 0.45 -2.69 16 24 N -0.31 -11.00 11.18 -48.60 -0.54 -11.54 16 25 C 0.08 3.46 4.65 86.32 0.40 3.86 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 3.41 6.16 -2.39 -0.01 3.39 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 2.64 5.80 -2.39 -0.01 2.62 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.03 1.16 8.08 -2.38 -0.02 1.14 16 34 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.24 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.19 -0.71 8.07 -2.38 -0.02 -0.73 16 37 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.41 1.19 8.93 -92.71 -0.83 0.36 16 39 H 0.43 -2.62 8.83 -92.71 -0.82 -3.44 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 2.94 8.12 -2.38 -0.02 2.93 16 Total: -1.00 -87.19 336.52 -0.66 -87.85 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -0.58 Total: -0.38 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.79 Total: -14.62 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -6.84 Total: -103.00 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.05 Total: -16.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -87.19 -0.66 -87.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350655243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.853 kcal (2) G-P(sol) polarization free energy of solvation -87.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds