Wall clock time and date at job start Tue Mar 31 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48500 * 109.46912 * 239.99314 * 3 2 1 5 5 H 1.48497 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46718 * 119.99985 * 3 2 1 7 7 C 1.37875 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52940 * 299.89819 * 9 7 2 11 11 C 1.53119 * 109.50328 * 59.99502 * 9 7 2 12 12 C 1.53119 * 109.15716 * 177.59777 * 11 9 7 13 13 C 1.53031 * 109.28116 * 302.34364 * 12 11 9 14 14 N 1.46850 * 109.52220 * 59.18015 * 13 12 11 15 15 C 1.46904 * 111.00150 * 174.16145 * 14 13 12 16 16 C 1.50696 * 109.46916 * 66.04677 * 15 14 13 17 17 C 1.35355 * 126.75113 * 95.24621 * 16 15 14 18 18 N 1.35311 * 106.17293 * 180.12399 * 17 16 15 19 19 C 1.46509 * 125.86756 * 179.90625 * 18 17 16 20 20 C 1.50698 * 109.47002 * 124.71274 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 20 19 18 22 22 O 1.21283 * 120.00472 * 0.02562 * 20 19 18 23 23 N 1.28710 * 108.26822 * 359.64204 * 18 17 16 24 24 N 1.28636 * 110.17828 * 0.22462 * 23 18 17 25 25 C 1.46846 * 111.19850 * 298.25906 * 14 13 12 26 26 H 0.97003 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.52266 * 57.69265 * 11 9 7 28 28 H 1.09004 * 109.57504 * 297.52996 * 11 9 7 29 29 H 1.09009 * 109.50216 * 182.40451 * 12 11 9 30 30 H 1.09004 * 109.50638 * 62.28864 * 12 11 9 31 31 H 1.09006 * 109.46554 * 299.16780 * 13 12 11 32 32 H 1.08998 * 109.46639 * 179.19779 * 13 12 11 33 33 H 1.09002 * 109.46912 * 306.04583 * 15 14 13 34 34 H 1.08995 * 109.46767 * 186.04707 * 15 14 13 35 35 H 1.08000 * 126.91094 * 0.02562 * 17 16 15 36 36 H 1.09003 * 109.46564 * 4.71702 * 19 18 17 37 37 H 1.08993 * 109.46901 * 244.72037 * 19 18 17 38 38 H 0.97001 * 120.00485 * 0.02562 * 21 20 19 39 39 H 0.97005 * 119.99790 * 179.72635 * 21 20 19 40 40 H 1.09004 * 109.46192 * 181.75367 * 25 14 13 41 41 H 1.08996 * 109.46308 * 301.72593 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6250 -2.5585 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3448 -3.9348 -1.2723 13 6 0.6952 -5.0569 -1.2399 14 7 1.5112 -4.9348 -0.0250 15 6 2.4287 -6.0741 0.1097 16 6 3.4403 -6.0391 -1.0066 17 6 4.6819 -5.5022 -0.9580 18 7 5.2252 -5.6975 -2.1817 19 6 6.5648 -5.2797 -2.6028 20 6 7.3217 -6.4728 -3.1267 21 7 8.5847 -6.3264 -3.5738 22 8 6.7940 -7.5647 -3.1469 23 7 4.3651 -6.3185 -2.9106 24 7 3.2899 -6.5371 -2.2391 25 6 2.2449 -3.6629 -0.0039 26 1 -0.4850 0.8401 -0.0004 27 1 0.9923 -2.4829 -2.1397 28 1 -0.3671 -1.7794 -1.2301 29 1 -0.9400 -4.0165 -2.1819 30 1 -0.9959 -4.0168 -0.4020 31 1 1.3374 -4.9826 -2.1176 32 1 0.1885 -6.0220 -1.2415 33 1 1.8628 -7.0043 0.0583 34 1 2.9434 -6.0145 1.0686 35 1 5.1449 -5.0145 -0.1129 36 1 7.0978 -4.8566 -1.7512 37 1 6.4810 -4.5289 -3.3884 38 1 9.0066 -5.4531 -3.5580 39 1 9.0733 -7.0951 -3.9073 40 1 2.8636 -3.6155 0.8923 41 1 2.8797 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350655244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:21 Heat of formation + Delta-G solvation = 65.599342 kcal Electronic energy + Delta-G solvation = -23940.618013 eV Core-core repulsion = 20471.747582 eV Total energy + Delta-G solvation = -3468.870431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.15754 -39.84183 -38.16739 -34.79478 -34.24882 -33.70960 -32.14114 -30.27733 -29.81351 -28.81321 -26.09543 -24.89992 -22.86554 -22.36406 -21.59275 -20.95337 -20.42507 -18.59163 -18.04777 -17.70103 -16.61356 -16.44559 -16.04968 -15.46224 -14.97265 -14.83469 -14.37945 -14.17235 -14.08811 -13.90148 -13.09953 -12.98843 -12.58724 -12.38619 -12.13021 -11.67420 -11.51640 -11.22673 -10.93928 -10.79770 -10.71342 -10.62415 -10.48447 -10.24697 -10.03022 -9.90571 -9.75075 -9.44627 -9.10192 -8.85569 -8.66417 -8.27990 -7.68239 -5.95568 -4.02083 1.65808 2.03377 2.12080 2.76329 2.97798 3.29904 3.35770 3.36315 4.09141 4.25802 4.41221 4.51168 4.54803 4.74480 5.05560 5.21149 5.34098 5.56519 5.86826 5.94742 5.98453 6.09434 6.20244 6.26192 6.34129 6.42434 6.48929 6.51900 6.63229 6.74483 6.83424 6.86687 7.02616 7.29657 7.46211 7.67494 7.73732 7.76369 7.87107 8.12688 8.21759 8.50564 8.70188 9.01570 9.61560 11.10290 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.004371 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.648815 B = 6404.426472 C = 7664.322430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.050 0.950 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.063 3.937 14 N -0.524 5.524 15 C 0.136 3.864 16 C -0.040 4.040 17 C -0.041 4.041 18 N -0.290 5.290 19 C 0.098 3.902 20 C 0.506 3.494 21 N -0.851 5.851 22 O -0.508 6.508 23 N -0.065 5.065 24 N -0.258 5.258 25 C 0.068 3.932 26 H 0.260 0.740 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.189 0.811 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.404 0.596 39 H 0.408 0.592 40 H 0.057 0.943 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.919 -9.149 -3.381 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.069 0.931 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.064 4.064 14 N -0.246 5.246 15 C 0.005 3.995 16 C -0.179 4.179 17 C -0.191 4.191 18 N -0.083 5.083 19 C -0.028 4.028 20 C 0.288 3.712 21 N -0.417 5.417 22 O -0.381 6.381 23 N -0.044 5.044 24 N -0.126 5.126 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.206 0.794 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.233 0.767 39 H 0.240 0.760 40 H 0.075 0.925 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 14.621 -10.258 -4.290 18.369 hybrid contribution 2.077 1.733 0.042 2.705 sum 16.698 -8.526 -4.248 19.224 Atomic orbital electron populations 1.69886 1.05810 1.26374 1.50479 1.24929 0.94804 0.98830 0.95221 0.86720 0.79655 0.83553 0.78373 1.20557 1.21285 1.20330 1.21082 0.92596 0.90766 1.50866 0.93131 1.18659 0.92638 0.90231 0.94852 0.94762 1.21630 0.99948 0.94838 0.98309 1.21692 0.97298 0.96491 1.00132 1.22027 0.95370 0.98534 0.90512 1.62414 1.22040 1.02145 1.38030 1.20727 0.90123 0.96209 0.92425 1.23157 0.95994 1.02142 0.96627 1.23424 0.96731 1.08560 0.90398 1.46643 1.12742 1.39262 1.09702 1.21758 0.79806 0.96663 1.04615 1.20355 0.82414 0.90253 0.78202 1.43690 1.15063 1.15130 1.67804 1.90899 1.67361 1.26724 1.53141 1.78344 0.94672 1.11448 1.19977 1.75100 1.14851 1.18636 1.04021 1.22306 0.96540 0.88613 0.98447 0.93003 0.95511 0.89228 0.93613 0.92150 0.94988 0.92251 0.89620 0.89348 0.79412 0.84609 0.85253 0.76724 0.76001 0.92475 0.96317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.35 55.43 0.63 -24.67 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.47 6.09 -26.65 -0.16 -2.63 16 13 C 0.06 1.24 5.10 -3.84 -0.02 1.22 16 14 N -0.52 -9.92 4.86 -236.11 -1.15 -11.07 16 15 C 0.14 2.13 5.94 -4.98 -0.03 2.10 16 16 C -0.04 -0.67 4.81 -82.77 -0.40 -1.06 16 17 C -0.04 -0.57 10.59 -17.05 -0.18 -0.75 16 18 N -0.29 -3.99 3.20 -62.44 -0.20 -4.19 16 19 C 0.10 0.76 6.94 -5.19 -0.04 0.73 16 20 C 0.51 4.60 8.11 -10.99 -0.09 4.52 16 21 N -0.85 -3.50 8.87 31.22 0.28 -3.22 16 22 O -0.51 -7.65 16.51 5.55 0.09 -7.56 16 23 N -0.07 -1.16 12.13 60.35 0.73 -0.43 16 24 N -0.26 -4.86 11.61 33.29 0.39 -4.47 16 25 C 0.07 1.42 4.07 -3.83 -0.02 1.41 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 29 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.03 0.67 6.88 -51.93 -0.36 0.32 16 32 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.19 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.14 0.49 8.07 -51.93 -0.42 0.07 16 37 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.40 0.20 8.83 -40.82 -0.36 -0.16 16 39 H 0.41 1.49 8.93 -40.82 -0.36 1.12 16 40 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 41 H 0.02 0.41 6.75 -51.93 -0.35 0.06 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -36.96 335.01 -6.80 -43.76 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.93 Total: -0.41 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.66 Total: -8.67 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.68 Total: -48.05 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.96 -6.80 -43.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350655244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.359 kcal (2) G-P(sol) polarization free energy of solvation -36.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds