Wall clock time and date at job start Tue Mar 31 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99660 * 2 1 4 4 H 1.48500 * 109.46912 * 239.99314 * 3 2 1 5 5 H 1.48497 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46718 * 119.99985 * 3 2 1 7 7 C 1.37875 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52940 * 299.89819 * 9 7 2 11 11 C 1.53119 * 109.50328 * 59.99502 * 9 7 2 12 12 C 1.53119 * 109.15716 * 177.59777 * 11 9 7 13 13 C 1.53031 * 109.28116 * 302.34364 * 12 11 9 14 14 N 1.46850 * 109.52220 * 59.18015 * 13 12 11 15 15 C 1.46904 * 111.00150 * 174.16145 * 14 13 12 16 16 C 1.50696 * 109.46916 * 66.04677 * 15 14 13 17 17 C 1.35355 * 126.75113 * 95.24621 * 16 15 14 18 18 N 1.35311 * 106.17293 * 180.12399 * 17 16 15 19 19 C 1.46509 * 125.86756 * 179.90625 * 18 17 16 20 20 C 1.50698 * 109.47002 * 124.71274 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 20 19 18 22 22 O 1.21283 * 120.00472 * 0.02562 * 20 19 18 23 23 N 1.28710 * 108.26822 * 359.64204 * 18 17 16 24 24 N 1.28636 * 110.17828 * 0.22462 * 23 18 17 25 25 C 1.46846 * 111.19850 * 298.25906 * 14 13 12 26 26 H 0.97003 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.52266 * 57.69265 * 11 9 7 28 28 H 1.09004 * 109.57504 * 297.52996 * 11 9 7 29 29 H 1.09009 * 109.50216 * 182.40451 * 12 11 9 30 30 H 1.09004 * 109.50638 * 62.28864 * 12 11 9 31 31 H 1.09006 * 109.46554 * 299.16780 * 13 12 11 32 32 H 1.08998 * 109.46639 * 179.19779 * 13 12 11 33 33 H 1.09002 * 109.46912 * 306.04583 * 15 14 13 34 34 H 1.08995 * 109.46767 * 186.04707 * 15 14 13 35 35 H 1.08000 * 126.91094 * 0.02562 * 17 16 15 36 36 H 1.09003 * 109.46564 * 4.71702 * 19 18 17 37 37 H 1.08993 * 109.46901 * 244.72037 * 19 18 17 38 38 H 0.97001 * 120.00485 * 0.02562 * 21 20 19 39 39 H 0.97005 * 119.99790 * 179.72635 * 21 20 19 40 40 H 1.09004 * 109.46192 * 181.75367 * 25 14 13 41 41 H 1.08996 * 109.46308 * 301.72593 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6250 -2.5585 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3448 -3.9348 -1.2723 13 6 0.6952 -5.0569 -1.2399 14 7 1.5112 -4.9348 -0.0250 15 6 2.4287 -6.0741 0.1097 16 6 3.4403 -6.0391 -1.0066 17 6 4.6819 -5.5022 -0.9580 18 7 5.2252 -5.6975 -2.1817 19 6 6.5648 -5.2797 -2.6028 20 6 7.3217 -6.4728 -3.1267 21 7 8.5847 -6.3264 -3.5738 22 8 6.7940 -7.5647 -3.1469 23 7 4.3651 -6.3185 -2.9106 24 7 3.2899 -6.5371 -2.2391 25 6 2.2449 -3.6629 -0.0039 26 1 -0.4850 0.8401 -0.0004 27 1 0.9923 -2.4829 -2.1397 28 1 -0.3671 -1.7794 -1.2301 29 1 -0.9400 -4.0165 -2.1819 30 1 -0.9959 -4.0168 -0.4020 31 1 1.3374 -4.9826 -2.1176 32 1 0.1885 -6.0220 -1.2415 33 1 1.8628 -7.0043 0.0583 34 1 2.9434 -6.0145 1.0686 35 1 5.1449 -5.0145 -0.1129 36 1 7.0978 -4.8566 -1.7512 37 1 6.4810 -4.5289 -3.3884 38 1 9.0066 -5.4531 -3.5580 39 1 9.0733 -7.0951 -3.9073 40 1 2.8636 -3.6155 0.8923 41 1 2.8797 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350655244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:20 Heat of formation + Delta-G solvation = 34.638443 kcal Electronic energy + Delta-G solvation = -23941.960578 eV Core-core repulsion = 20471.747582 eV Total energy + Delta-G solvation = -3470.212996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.25592 -40.58946 -39.76132 -36.11259 -35.26472 -34.78152 -33.84129 -31.69357 -31.56698 -29.65597 -27.47672 -26.87106 -24.07598 -23.68452 -23.04984 -22.33427 -21.41904 -20.20923 -18.88862 -18.50805 -18.32223 -17.34075 -17.08909 -16.67121 -16.33356 -16.16595 -15.88647 -15.51564 -15.34153 -14.89495 -14.77892 -14.32882 -14.09923 -13.87068 -13.61307 -13.24615 -12.95285 -12.78963 -12.62730 -12.49204 -12.33859 -11.85752 -11.78532 -11.62920 -11.57681 -11.36816 -10.96225 -10.82219 -10.77317 -10.62536 -10.34140 -10.11319 -9.21053 -8.02781 -6.17086 0.62748 1.31598 1.39467 1.44503 1.46029 1.53411 1.56069 2.37419 2.46577 3.21327 3.24467 3.41716 3.69789 3.81343 3.99929 4.02032 4.14526 4.26391 4.34027 4.43117 4.53774 4.69727 4.78608 4.84542 4.93303 4.98164 5.05490 5.13289 5.21006 5.22321 5.41912 5.55271 5.57749 5.67006 5.78202 6.00480 6.14249 6.23559 6.30242 6.33989 6.50017 6.95885 7.18518 7.50633 7.54828 9.02012 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.004371 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.648815 B = 6404.426472 C = 7664.322430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.052 3.948 10 H 0.000 1.000 11 C -0.101 4.101 12 C -0.112 4.112 13 C 0.074 3.926 14 N -0.530 5.530 15 C 0.139 3.861 16 C -0.066 4.066 17 C -0.029 4.029 18 N -0.282 5.282 19 C 0.085 3.915 20 C 0.506 3.494 21 N -0.823 5.823 22 O -0.578 6.578 23 N -0.103 5.103 24 N -0.298 5.298 25 C 0.087 3.913 26 H 0.259 0.741 27 H 0.010 0.990 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.229 0.771 36 H 0.186 0.814 37 H 0.154 0.846 38 H 0.425 0.575 39 H 0.413 0.587 40 H 0.072 0.928 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.702 -8.530 -2.733 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.033 3.967 10 H 0.018 0.982 11 C -0.139 4.139 12 C -0.150 4.150 13 C -0.054 4.054 14 N -0.252 5.252 15 C 0.009 3.991 16 C -0.205 4.205 17 C -0.180 4.180 18 N -0.076 5.076 19 C -0.038 4.038 20 C 0.288 3.712 21 N -0.389 5.389 22 O -0.457 6.457 23 N -0.082 5.082 24 N -0.165 5.165 25 C -0.040 4.040 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.245 0.755 36 H 0.204 0.796 37 H 0.171 0.829 38 H 0.258 0.742 39 H 0.246 0.754 40 H 0.091 0.909 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 17.488 -9.619 -3.678 20.295 hybrid contribution 1.312 1.564 -0.172 2.049 sum 18.800 -8.055 -3.850 20.812 Atomic orbital electron populations 1.70050 1.07375 1.27019 1.51371 1.25760 0.95595 1.02447 0.94916 0.85670 0.78383 0.79041 0.78893 1.19772 1.21491 1.19074 1.21487 0.93130 0.91849 1.50508 0.92425 1.18603 0.93085 0.91758 0.93253 0.98195 1.21445 0.99087 0.95912 0.97499 1.21611 0.97591 0.95125 1.00666 1.21891 0.94775 0.98453 0.90316 1.62356 1.22913 1.02457 1.37458 1.20800 0.89896 0.94790 0.93593 1.23319 0.97497 1.03478 0.96253 1.24016 0.95915 1.06876 0.91189 1.47025 1.13889 1.37393 1.09289 1.22395 0.77448 0.96437 1.07568 1.20613 0.83327 0.89572 0.77656 1.43501 1.13426 1.16554 1.65429 1.90884 1.69133 1.29222 1.56433 1.78243 0.95449 1.13352 1.21136 1.75019 1.16071 1.20107 1.05314 1.21962 0.95253 0.88092 0.98736 0.93231 0.97067 0.92408 0.92229 0.92524 0.96608 0.90467 0.89070 0.86531 0.75460 0.79640 0.82852 0.74242 0.75446 0.90933 0.97033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.51 11.35 21.45 0.24 -53.26 16 2 C 0.01 0.62 5.30 84.65 0.45 1.07 16 3 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.53 -28.65 8.56 25.60 0.22 -28.43 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.05 2.62 2.26 -11.49 -0.03 2.60 16 10 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 11 C -0.10 -5.08 5.02 30.67 0.15 -4.93 16 12 C -0.11 -4.72 6.09 30.64 0.19 -4.53 16 13 C 0.07 2.84 5.10 86.32 0.44 3.28 16 14 N -0.53 -19.39 4.86 -900.93 -4.38 -23.76 16 15 C 0.14 4.08 5.94 85.55 0.51 4.59 16 16 C -0.07 -2.07 4.81 41.60 0.20 -1.87 16 17 C -0.03 -0.71 10.59 83.49 0.88 0.17 16 18 N -0.28 -7.20 3.20 -351.45 -1.12 -8.32 16 19 C 0.09 1.04 6.94 85.63 0.59 1.64 16 20 C 0.51 8.21 8.11 87.66 0.71 8.92 16 21 N -0.82 -4.51 8.87 -173.53 -1.54 -6.05 16 22 O -0.58 -17.35 16.51 -3.04 -0.05 -17.40 16 23 N -0.10 -3.64 12.13 37.02 0.45 -3.19 16 24 N -0.30 -11.21 11.61 -48.60 -0.56 -11.77 16 25 C 0.09 3.54 4.07 86.33 0.35 3.89 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 3.25 6.15 -2.38 -0.01 3.24 16 29 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.02 0.66 6.88 -2.38 -0.02 0.65 16 32 H 0.08 2.69 8.06 -2.39 -0.02 2.67 16 33 H 0.09 2.57 8.06 -2.39 -0.02 2.55 16 34 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.23 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.19 0.34 8.07 -2.39 -0.02 0.32 16 37 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.42 -1.20 8.83 -92.71 -0.82 -2.02 16 39 H 0.41 2.12 8.93 -92.70 -0.83 1.29 16 40 H 0.07 2.70 8.12 -2.38 -0.02 2.68 16 41 H 0.01 0.48 6.75 -2.39 -0.02 0.47 16 Total: -1.00 -84.76 335.01 -0.85 -85.60 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -0.58 Total: 7.23 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.67 Total: -13.61 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -6.91 Total: -106.37 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.05 Total: -17.40 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -84.76 -0.85 -85.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350655244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.242 kcal (2) G-P(sol) polarization free energy of solvation -84.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds