Wall clock time and date at job start Tue Mar 31 2020 03:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.50698 * 109.47318 * 125.32189 * 14 13 12 16 16 O 1.21277 * 120.00055 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00119 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00262 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47358 * 180.02562 * 18 17 15 20 20 C 1.53778 * 113.61422 * 274.13631 * 19 18 17 21 21 C 1.53948 * 87.02097 * 220.04587 * 20 19 18 22 22 C 1.53775 * 113.61514 * 176.52854 * 19 18 17 23 23 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 24 24 N 1.28636 * 110.17920 * 359.73997 * 23 13 12 25 25 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 28 28 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 29 29 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.46924 * 245.32891 * 14 13 12 31 31 H 1.09000 * 109.46687 * 5.32699 * 14 13 12 32 32 H 0.97007 * 120.00308 * 0.02562 * 17 15 14 33 33 H 1.08996 * 109.46828 * 300.00430 * 18 17 15 34 34 H 1.08997 * 109.47223 * 59.99999 * 18 17 15 35 35 H 1.09006 * 112.85034 * 45.32898 * 19 18 17 36 36 H 1.09007 * 113.61562 * 334.56982 * 20 19 18 37 37 H 1.09005 * 113.61580 * 105.46674 * 20 19 18 38 38 H 1.09000 * 113.54063 * 270.81183 * 21 20 19 39 39 H 1.09008 * 113.66568 * 139.93125 * 21 20 19 40 40 H 1.09000 * 113.61614 * 254.52965 * 22 19 18 41 41 H 1.08996 * 113.61436 * 25.34801 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8637 -1.7187 1.3908 15 6 9.9220 -2.6634 0.8825 16 8 9.6840 -3.3914 -0.0578 17 7 11.1333 -2.6987 1.4722 18 6 12.1623 -3.6168 0.9777 19 6 13.4325 -3.4585 1.8160 20 6 14.3576 -2.3322 1.3258 21 6 15.5350 -3.2763 1.6298 22 6 14.5509 -4.4412 1.4312 23 7 7.5709 -1.7651 -0.6923 24 7 6.3594 -1.9536 -1.0814 25 1 -0.4851 0.8401 0.0004 26 1 3.8646 -0.3620 0.0004 27 1 3.8521 -3.0451 0.8825 28 1 3.8454 -3.0397 -0.8974 29 1 6.1310 -2.2805 2.1000 30 1 9.2245 -0.6931 1.3134 31 1 8.6421 -1.9482 2.4331 32 1 11.3238 -2.1162 2.2242 33 1 11.8017 -4.6424 1.0552 34 1 12.3835 -3.3872 -0.0646 35 1 13.2313 -3.4234 2.8867 36 1 14.2436 -2.1035 0.2661 37 1 14.3354 -1.4433 1.9564 38 1 15.9098 -3.1904 2.6498 39 1 16.3277 -3.2420 0.8823 40 1 14.6846 -5.2526 2.1466 41 1 14.4890 -4.7914 0.4008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352983418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:37 Heat of formation + Delta-G solvation = 104.394575 kcal Electronic energy + Delta-G solvation = -22277.771346 eV Core-core repulsion = 18810.583203 eV Total energy + Delta-G solvation = -3467.188143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.02953 -40.31711 -39.13468 -35.35461 -34.93613 -34.18947 -31.85013 -30.29317 -29.94394 -27.84528 -26.20277 -26.04857 -23.57783 -22.41257 -22.10777 -21.26832 -20.62878 -19.86104 -18.06881 -17.73608 -17.28536 -16.54749 -16.16258 -15.73285 -15.57824 -14.89582 -14.63506 -14.46802 -14.26152 -14.00149 -13.82829 -13.18283 -13.03338 -12.78232 -12.65454 -12.56090 -12.21759 -12.03731 -11.51103 -11.21349 -11.05542 -11.01050 -10.86595 -10.83253 -10.58835 -10.43303 -10.12835 -9.78852 -9.58391 -9.54701 -8.91160 -8.84557 -7.18389 -5.71597 -3.06852 1.70038 2.08560 2.14250 2.75344 2.89379 3.42711 3.48183 3.50824 3.90455 3.99009 4.07999 4.13747 4.24329 4.27975 4.50874 4.64052 4.65351 4.69117 4.87750 5.11958 5.17140 5.19752 5.20258 5.34422 5.37074 5.41873 5.43064 5.60703 5.60858 5.75753 5.79261 5.82325 5.93668 6.34281 6.60767 6.63966 6.74943 6.92245 7.68816 8.03568 8.47177 8.81623 9.25614 9.98193 10.18772 11.46585 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.045472 B = 0.002351 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.621696 B =11907.149019 C =12192.578015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.750 5.750 10 C 0.238 3.762 11 C -0.010 4.010 12 C -0.046 4.046 13 N -0.294 5.294 14 C 0.101 3.899 15 C 0.500 3.500 16 O -0.502 6.502 17 N -0.727 5.727 18 C 0.130 3.870 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.132 4.132 23 N -0.067 5.067 24 N -0.255 5.255 25 H 0.259 0.741 26 H 0.362 0.638 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.191 0.809 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.512 -5.925 10.514 35.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.109 3.891 11 C -0.147 4.147 12 C -0.195 4.195 13 N -0.088 5.088 14 C -0.025 4.025 15 C 0.283 3.717 16 O -0.374 6.374 17 N -0.381 5.381 18 C 0.007 3.993 19 C -0.144 4.144 20 C -0.175 4.175 21 C -0.181 4.181 22 C -0.170 4.170 23 N -0.046 5.046 24 N -0.123 5.123 25 H 0.069 0.931 26 H 0.195 0.805 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.208 0.792 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 33.874 -6.304 8.509 35.491 hybrid contribution 0.270 1.388 1.569 2.112 sum 34.144 -4.916 10.078 35.938 Atomic orbital electron populations 1.69698 1.05019 1.25774 1.57670 1.24631 0.95205 0.97129 1.02046 0.86539 0.78988 0.85009 0.77933 1.20975 1.21778 1.20594 1.19057 0.80252 0.94907 1.42931 0.88880 1.42663 1.03899 1.01828 1.91191 1.18915 0.80213 0.89802 1.00139 1.22503 0.98988 1.04698 0.88478 1.23409 0.83937 1.10026 1.02162 1.46670 1.07469 1.47837 1.06842 1.21715 0.82769 1.02151 0.95884 1.20377 0.83188 0.84285 0.83848 1.90866 1.79506 1.40752 1.26320 1.45834 1.12735 1.43129 1.36450 1.21422 0.86114 0.93631 0.98138 1.22838 0.93066 0.98347 1.00181 1.23053 0.95804 0.96833 1.01857 1.22843 0.96824 0.96373 1.02035 1.22873 0.94991 0.96709 1.02381 1.78372 1.15709 1.18598 0.91957 1.75139 0.95912 1.15145 1.26100 0.93080 0.80506 0.93591 0.93395 0.79168 0.85578 0.84826 0.76380 0.91189 0.91023 0.88496 0.89749 0.91289 0.90092 0.91205 0.91070 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 23.01 27.74 -169.99 -4.71 18.29 16 4 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 7 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.75 -18.89 5.40 -61.09 -0.33 -19.22 16 10 C 0.24 4.99 6.82 -5.19 -0.04 4.95 16 11 C -0.01 -0.18 6.61 -82.78 -0.55 -0.73 16 12 C -0.05 -0.68 11.50 -17.04 -0.20 -0.88 16 13 N -0.29 -4.19 3.20 -62.45 -0.20 -4.39 16 14 C 0.10 0.79 6.94 -5.20 -0.04 0.76 16 15 C 0.50 4.86 7.84 -10.99 -0.09 4.77 16 16 O -0.50 -7.79 15.68 5.56 0.09 -7.70 16 17 N -0.73 -4.14 5.56 -60.30 -0.33 -4.47 16 18 C 0.13 0.80 5.50 -4.04 -0.02 0.77 16 19 C -0.13 -0.47 3.75 -89.81 -0.34 -0.81 16 20 C -0.14 -0.52 7.65 -25.83 -0.20 -0.72 16 21 C -0.14 -0.51 8.09 -25.83 -0.21 -0.72 16 22 C -0.13 -0.51 7.65 -25.92 -0.20 -0.71 16 23 N -0.07 -1.26 12.13 60.35 0.73 -0.53 16 24 N -0.25 -5.38 12.41 33.29 0.41 -4.97 16 25 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 26 H 0.36 9.18 5.52 -40.82 -0.23 8.95 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 30 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.13 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.40 0.87 8.47 -40.82 -0.35 0.53 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 35 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.36 8.10 -51.93 -0.42 -0.06 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -39.75 348.78 -6.48 -46.24 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.05 Total: 0.94 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.12 Total: -0.42 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: 1.06 Total: -62.60 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.75 -6.48 -46.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352983418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.632 kcal (2) G-P(sol) polarization free energy of solvation -39.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds