Wall clock time and date at job start Tue Mar 31 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.50698 * 109.47318 * 125.32189 * 14 13 12 16 16 O 1.21277 * 120.00055 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00119 * 179.97438 * 15 14 13 18 18 C 1.46503 * 120.00262 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47358 * 180.02562 * 18 17 15 20 20 C 1.53778 * 113.61422 * 274.13631 * 19 18 17 21 21 C 1.53948 * 87.02097 * 220.04587 * 20 19 18 22 22 C 1.53775 * 113.61514 * 176.52854 * 19 18 17 23 23 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 24 24 N 1.28636 * 110.17920 * 359.73997 * 23 13 12 25 25 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 28 28 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 29 29 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.46924 * 245.32891 * 14 13 12 31 31 H 1.09000 * 109.46687 * 5.32699 * 14 13 12 32 32 H 0.97007 * 120.00308 * 0.02562 * 17 15 14 33 33 H 1.08996 * 109.46828 * 300.00430 * 18 17 15 34 34 H 1.08997 * 109.47223 * 59.99999 * 18 17 15 35 35 H 1.09006 * 112.85034 * 45.32898 * 19 18 17 36 36 H 1.09007 * 113.61562 * 334.56982 * 20 19 18 37 37 H 1.09005 * 113.61580 * 105.46674 * 20 19 18 38 38 H 1.09000 * 113.54063 * 270.81183 * 21 20 19 39 39 H 1.09008 * 113.66568 * 139.93125 * 21 20 19 40 40 H 1.09000 * 113.61614 * 254.52965 * 22 19 18 41 41 H 1.08996 * 113.61436 * 25.34801 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.4103 -2.1384 1.0664 13 7 7.6475 -1.8703 0.5883 14 6 8.8637 -1.7187 1.3908 15 6 9.9220 -2.6634 0.8825 16 8 9.6840 -3.3914 -0.0578 17 7 11.1333 -2.6987 1.4722 18 6 12.1623 -3.6168 0.9777 19 6 13.4325 -3.4585 1.8160 20 6 14.3576 -2.3322 1.3258 21 6 15.5350 -3.2763 1.6298 22 6 14.5509 -4.4412 1.4312 23 7 7.5709 -1.7651 -0.6923 24 7 6.3594 -1.9536 -1.0814 25 1 -0.4851 0.8401 0.0004 26 1 3.8646 -0.3620 0.0004 27 1 3.8521 -3.0451 0.8825 28 1 3.8454 -3.0397 -0.8974 29 1 6.1310 -2.2805 2.1000 30 1 9.2245 -0.6931 1.3134 31 1 8.6421 -1.9482 2.4331 32 1 11.3238 -2.1162 2.2242 33 1 11.8017 -4.6424 1.0552 34 1 12.3835 -3.3872 -0.0646 35 1 13.2313 -3.4234 2.8867 36 1 14.2436 -2.1035 0.2661 37 1 14.3354 -1.4433 1.9564 38 1 15.9098 -3.1904 2.6498 39 1 16.3277 -3.2420 0.8823 40 1 14.6846 -5.2526 2.1466 41 1 14.4890 -4.7914 0.4008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352983418.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:36 Heat of formation + Delta-G solvation = 72.852201 kcal Electronic energy + Delta-G solvation = -22279.139126 eV Core-core repulsion = 18810.583203 eV Total energy + Delta-G solvation = -3468.555923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.25928 -40.97805 -39.59405 -37.05565 -35.63675 -35.48214 -33.79061 -31.93564 -30.74195 -28.53889 -27.75729 -26.49901 -24.39439 -24.11450 -23.04600 -22.49230 -21.59027 -20.30098 -19.86541 -18.60673 -18.39960 -17.20360 -17.00468 -16.67083 -16.39028 -16.15552 -15.92961 -15.69596 -15.32715 -14.99323 -14.68863 -14.64299 -14.37581 -13.95668 -13.51662 -13.34891 -13.33968 -12.90413 -12.89358 -12.63922 -12.51159 -12.11219 -11.87554 -11.80465 -11.64294 -11.50382 -11.28761 -11.17942 -11.01651 -10.78654 -10.21478 -10.20679 -9.31188 -8.01314 -5.34935 0.58470 1.25935 1.35702 1.40349 1.42098 1.45618 1.50416 2.08976 2.49018 3.27460 3.30535 3.51717 3.65019 3.71594 3.74957 3.82359 3.84278 3.98368 4.01821 4.03865 4.24644 4.29179 4.47683 4.55643 4.68389 4.84748 4.86325 4.87935 4.96504 5.10011 5.10267 5.12794 5.15511 5.23674 5.37173 5.58870 5.60615 5.76181 6.21992 6.39876 7.06481 7.09856 7.52234 7.81205 8.02032 9.19774 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.045472 B = 0.002351 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.621696 B =11907.149019 C =12192.578015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.953 3.047 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.232 4.232 8 H 0.066 0.934 9 N -0.751 5.751 10 C 0.240 3.760 11 C -0.047 4.047 12 C -0.013 4.013 13 N -0.281 5.281 14 C 0.090 3.910 15 C 0.498 3.502 16 O -0.571 6.571 17 N -0.703 5.703 18 C 0.131 3.869 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.137 4.137 23 N -0.095 5.095 24 N -0.304 5.304 25 H 0.259 0.741 26 H 0.363 0.637 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.241 0.759 30 H 0.161 0.839 31 H 0.191 0.809 32 H 0.424 0.576 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.301 -4.742 13.673 39.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.781 3.219 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.363 4.363 8 H 0.084 0.916 9 N -0.397 5.397 10 C 0.113 3.887 11 C -0.185 4.185 12 C -0.164 4.164 13 N -0.075 5.075 14 C -0.033 4.033 15 C 0.282 3.718 16 O -0.449 6.449 17 N -0.357 5.357 18 C 0.007 3.993 19 C -0.132 4.132 20 C -0.176 4.176 21 C -0.179 4.179 22 C -0.175 4.175 23 N -0.074 5.074 24 N -0.172 5.172 25 H 0.068 0.932 26 H 0.196 0.804 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.258 0.742 30 H 0.178 0.822 31 H 0.208 0.792 32 H 0.262 0.738 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 36.776 -5.117 11.715 38.935 hybrid contribution -0.468 0.889 0.637 1.190 sum 36.308 -4.228 12.352 38.584 Atomic orbital electron populations 1.69863 1.06864 1.26650 1.59661 1.25415 0.96076 1.00941 1.02700 0.85441 0.78630 0.80187 0.77671 1.21581 1.21464 1.17959 1.19060 0.82097 0.93903 1.41214 0.91605 1.42668 1.02535 1.03512 1.91005 1.18894 0.81688 0.87951 1.00165 1.22300 0.98272 1.07988 0.89922 1.23983 0.83139 1.06287 1.03023 1.47081 1.09213 1.45216 1.05989 1.22429 0.79996 1.03468 0.97366 1.20781 0.84304 0.83686 0.82989 1.90860 1.80816 1.43724 1.29457 1.45664 1.11345 1.42529 1.36174 1.21386 0.87188 0.92964 0.97773 1.22812 0.91453 0.98241 1.00686 1.23039 0.95823 0.97319 1.01389 1.22859 0.96601 0.95892 1.02564 1.22911 0.95388 0.97176 1.02069 1.78264 1.14791 1.19999 0.94383 1.75059 0.97136 1.16899 1.28080 0.93249 0.80421 0.91191 0.95298 0.74249 0.82178 0.79199 0.73812 0.92594 0.93065 0.86488 0.90993 0.90063 0.89018 0.91541 0.90499 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.62 13.97 21.65 0.30 -63.31 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.95 47.29 27.74 68.60 1.90 49.19 16 4 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.25 -11.47 6.52 99.48 0.65 -10.83 16 7 C -0.23 -13.60 10.47 84.03 0.88 -12.72 16 8 H 0.07 4.14 8.06 -2.91 -0.02 4.11 16 9 N -0.75 -37.28 5.40 -347.18 -1.87 -39.16 16 10 C 0.24 9.95 6.82 85.63 0.58 10.54 16 11 C -0.05 -1.73 6.61 41.60 0.28 -1.46 16 12 C -0.01 -0.34 11.50 83.49 0.96 0.62 16 13 N -0.28 -7.11 3.20 -351.48 -1.12 -8.23 16 14 C 0.09 0.98 6.94 85.63 0.59 1.58 16 15 C 0.50 8.45 7.84 87.66 0.69 9.13 16 16 O -0.57 -17.58 15.68 -3.02 -0.05 -17.63 16 17 N -0.70 -5.99 5.56 -463.08 -2.57 -8.56 16 18 C 0.13 1.45 5.50 86.38 0.47 1.93 16 19 C -0.11 -0.60 3.75 -10.27 -0.04 -0.63 16 20 C -0.14 -0.76 7.65 31.18 0.24 -0.53 16 21 C -0.14 -0.76 8.09 31.18 0.25 -0.51 16 22 C -0.14 -0.89 7.65 31.12 0.24 -0.65 16 23 N -0.10 -3.48 12.13 37.02 0.45 -3.03 16 24 N -0.30 -12.84 12.41 -48.60 -0.60 -13.45 16 25 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 26 H 0.36 17.77 5.52 -92.71 -0.51 17.26 16 27 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.24 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.19 -0.07 8.07 -2.39 -0.02 -0.09 16 32 H 0.42 -0.06 8.47 -92.70 -0.79 -0.85 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.80 7.88 -2.39 -0.02 0.78 16 35 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 36 H 0.07 0.59 7.92 -2.38 -0.02 0.57 16 37 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 Total: -1.00 -91.79 348.78 1.74 -90.05 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -0.30 Total: 9.97 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 5.61 Total: 4.17 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -5.42 Total: -135.75 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.90 Total: 49.19 kcal Total: -91.79 1.74 -90.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352983418.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.900 kcal (2) G-P(sol) polarization free energy of solvation -91.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds