Wall clock time and date at job start Tue Mar 31 2020 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48498 * 109.47354 * 239.99667 * 3 2 1 5 5 H 1.48505 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47407 * 119.99484 * 3 2 1 7 7 C 1.37881 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.53114 * 109.52451 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.28061 * 182.37553 * 10 9 7 12 12 N 1.46844 * 109.52231 * 59.17631 * 11 10 9 13 13 C 1.46899 * 110.99923 * 174.15904 * 12 11 10 14 14 C 1.50703 * 109.47238 * 170.00149 * 13 12 11 15 15 C 1.35349 * 126.74991 * 94.99891 * 14 13 12 16 16 N 1.35315 * 106.17628 * 180.02562 * 15 14 13 17 17 C 1.46491 * 125.87053 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.46957 * 125.00065 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72354 * 18 17 16 20 20 O 1.21283 * 120.00262 * 0.02562 * 18 17 16 21 21 N 1.28722 * 108.25681 * 0.26560 * 16 15 14 22 22 N 1.28628 * 110.18337 * 359.55832 * 21 16 15 23 23 C 1.46842 * 111.20249 * 298.26247 * 12 11 10 24 24 C 1.53034 * 109.52415 * 61.73939 * 23 12 11 25 25 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52255 * 300.12495 * 9 7 2 27 27 H 1.08997 * 109.50668 * 62.43506 * 10 9 7 28 28 H 1.08997 * 109.53852 * 302.33651 * 10 9 7 29 29 H 1.09004 * 109.46036 * 299.16235 * 11 10 9 30 30 H 1.08998 * 109.45156 * 179.18961 * 11 10 9 31 31 H 1.09005 * 109.47075 * 50.00409 * 13 12 11 32 32 H 1.08999 * 109.47192 * 290.00348 * 13 12 11 33 33 H 1.08002 * 126.91321 * 0.05044 * 15 14 13 34 34 H 1.09004 * 109.47166 * 5.00331 * 17 16 15 35 35 H 1.08994 * 109.47507 * 245.00037 * 17 16 15 36 36 H 0.96999 * 120.00047 * 180.27521 * 19 18 17 37 37 H 0.97000 * 120.00317 * 0.28382 * 19 18 17 38 38 H 1.08993 * 109.46481 * 181.75638 * 23 12 11 39 39 H 1.09004 * 109.45918 * 301.72598 * 23 12 11 40 40 H 1.09008 * 109.50670 * 180.88312 * 24 23 12 41 41 H 1.08994 * 109.53614 * 60.78267 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9852 -0.0593 12 7 0.6531 -5.0195 -1.2758 13 6 0.0068 -6.3287 -1.4376 14 6 -1.0112 -6.2528 -2.5462 15 6 -0.8221 -6.5887 -3.8437 16 7 -2.0004 -6.3592 -4.4681 17 6 -2.2755 -6.5792 -5.8900 18 6 -3.4710 -7.4851 -6.0360 19 7 -3.9141 -7.8236 -7.2630 20 8 -4.0377 -7.9052 -5.0494 21 7 -2.8366 -5.9095 -3.5988 22 7 -2.2792 -5.8396 -2.4416 23 6 -0.3405 -3.9384 -1.2760 24 6 0.3752 -2.5859 -1.2525 25 1 -0.4850 0.8401 -0.0004 26 1 0.6221 -2.5566 0.8889 27 1 2.8429 -3.6321 0.9113 28 1 2.8995 -3.5845 -0.8674 29 1 0.8315 -5.0705 0.8163 30 1 2.1804 -5.8160 -0.0740 31 1 -0.4891 -6.6066 -0.5074 32 1 0.7592 -7.0772 -1.6858 33 1 0.0864 -6.9647 -4.2906 34 1 -1.4085 -7.0432 -6.3603 35 1 -2.4826 -5.6239 -6.3721 36 1 -4.6860 -8.4035 -7.3570 37 1 -3.4611 -7.4875 -8.0521 38 1 -0.9539 -4.0091 -2.1742 39 1 -0.9756 -4.0286 -0.3947 40 1 -0.3628 -1.7838 -1.2368 41 1 0.9997 -2.4886 -2.1404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462094366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:15 Heat of formation + Delta-G solvation = 70.351460 kcal Electronic energy + Delta-G solvation = -23454.501795 eV Core-core repulsion = 19985.837432 eV Total energy + Delta-G solvation = -3468.664363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.21329 -39.87552 -38.11981 -34.88953 -34.29308 -33.80428 -31.94737 -30.36922 -29.66781 -28.86783 -26.70557 -24.46702 -22.85578 -22.19244 -21.72967 -21.06141 -20.33480 -18.43208 -18.24776 -17.75375 -16.65843 -16.40214 -16.11649 -15.59668 -14.95653 -14.86287 -14.45149 -14.34724 -14.04975 -13.63465 -13.23927 -12.89502 -12.73581 -12.28429 -12.02667 -11.84615 -11.35935 -11.26708 -10.87043 -10.82712 -10.67733 -10.58540 -10.36735 -10.27907 -10.09693 -9.91951 -9.87441 -9.32280 -9.09626 -8.83400 -8.57903 -8.19642 -7.63366 -5.87401 -3.93250 1.61226 1.99531 2.06472 2.69351 2.93466 3.37987 3.42602 3.44976 4.02447 4.20741 4.44395 4.46556 4.52085 4.70914 4.94197 5.16498 5.41986 5.53146 5.72523 5.82459 5.97451 6.08324 6.16864 6.24891 6.26359 6.42989 6.46814 6.50224 6.70468 6.74578 6.80541 6.97813 7.17781 7.26340 7.55707 7.64244 7.71672 7.79430 7.92940 8.16024 8.28291 8.58118 8.66398 9.10527 9.70427 11.18468 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.003255 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.105968 B = 8599.381530 C = 9266.101563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.531 5.531 13 C 0.136 3.864 14 C -0.003 4.003 15 C -0.039 4.039 16 N -0.293 5.293 17 C 0.099 3.901 18 C 0.505 3.495 19 N -0.851 5.851 20 O -0.507 6.507 21 N -0.060 5.060 22 N -0.255 5.255 23 C 0.061 3.939 24 C -0.102 4.102 25 H 0.259 0.741 26 H 0.021 0.979 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.026 0.974 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.191 0.809 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.408 0.592 37 H 0.404 0.596 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.090 0.910 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 -17.039 -16.878 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.257 5.257 13 C 0.007 3.993 14 C -0.139 4.139 15 C -0.189 4.189 16 N -0.087 5.087 17 C -0.027 4.027 18 C 0.286 3.714 19 N -0.417 5.417 20 O -0.380 6.380 21 N -0.040 5.040 22 N -0.124 5.124 23 C -0.066 4.066 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.208 0.792 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.240 0.760 37 H 0.232 0.768 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.108 0.892 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.145 -16.522 -16.265 23.552 hybrid contribution 0.856 0.331 -0.323 0.973 sum -3.289 -16.191 -16.588 23.412 Atomic orbital electron populations 1.69887 1.05825 1.26317 1.50895 1.24983 0.94814 0.98934 0.95346 0.86715 0.79602 0.83486 0.78481 1.20404 1.21430 1.20397 1.21171 0.92767 0.90734 1.50226 0.92863 1.18685 0.92688 0.91662 0.94076 1.21664 0.98650 0.93756 1.00213 1.22130 0.95745 0.99320 0.89530 1.62229 1.23553 1.01512 1.38424 1.20349 0.92161 0.93596 0.93234 1.21827 0.93782 1.03612 0.94727 1.23264 0.91814 1.09825 0.93975 1.46650 1.09135 1.43857 1.09078 1.21735 0.99706 1.02725 0.78511 1.20368 0.85461 0.81516 0.84022 1.43691 1.35954 1.54534 1.07536 1.90911 1.56931 1.52776 1.37364 1.78402 1.17114 1.15245 0.93193 1.75187 1.06721 1.16806 1.13656 1.22273 0.92704 0.92276 0.99354 1.21650 1.00010 0.93323 0.99072 0.93085 0.96121 0.93156 0.92549 0.95540 0.92327 0.93466 0.89626 0.79211 0.84667 0.85244 0.75976 0.76778 0.92507 0.95625 0.89152 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 11.37 55.43 0.63 -25.71 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.41 8.57 -34.44 -0.29 -14.70 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 10 C -0.10 -2.25 5.32 -26.65 -0.14 -2.39 16 11 C 0.06 1.11 5.42 -3.83 -0.02 1.09 16 12 N -0.53 -9.91 4.80 -236.11 -1.13 -11.04 16 13 C 0.14 2.11 5.84 -4.97 -0.03 2.08 16 14 C 0.00 -0.05 5.17 -82.77 -0.43 -0.47 16 15 C -0.04 -0.49 11.50 -17.05 -0.20 -0.68 16 16 N -0.29 -3.69 3.19 -62.45 -0.20 -3.89 16 17 C 0.10 0.63 6.94 -5.20 -0.04 0.60 16 18 C 0.50 4.13 8.11 -10.98 -0.09 4.05 16 19 N -0.85 -2.77 8.87 31.22 0.28 -2.49 16 20 O -0.51 -7.32 16.52 5.55 0.09 -7.23 16 21 N -0.06 -1.05 12.14 60.35 0.73 -0.31 16 22 N -0.26 -4.85 11.18 33.29 0.37 -4.48 16 23 C 0.06 1.34 4.90 -3.84 -0.02 1.32 16 24 C -0.10 -2.57 5.12 -26.65 -0.14 -2.71 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 31 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.14 0.24 8.07 -51.93 -0.42 -0.18 16 35 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.41 1.22 8.93 -40.82 -0.36 0.85 16 37 H 0.40 -0.22 8.83 -40.82 -0.36 -0.58 16 38 H 0.06 1.25 5.80 -51.93 -0.30 0.95 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.55 6.17 -51.92 -0.32 2.23 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -38.58 336.56 -6.81 -45.40 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.95 Total: -2.91 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.68 Total: -9.18 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.68 Total: -47.92 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.23 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.58 -6.81 -45.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462094366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.750 kcal (2) G-P(sol) polarization free energy of solvation -38.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds