Wall clock time and date at job start Tue Mar 31 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48498 * 109.47354 * 239.99667 * 3 2 1 5 5 H 1.48505 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47407 * 119.99484 * 3 2 1 7 7 C 1.37881 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.53114 * 109.52451 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.28061 * 182.37553 * 10 9 7 12 12 N 1.46844 * 109.52231 * 59.17631 * 11 10 9 13 13 C 1.46899 * 110.99923 * 174.15904 * 12 11 10 14 14 C 1.50703 * 109.47238 * 170.00149 * 13 12 11 15 15 C 1.35349 * 126.74991 * 94.99891 * 14 13 12 16 16 N 1.35315 * 106.17628 * 180.02562 * 15 14 13 17 17 C 1.46491 * 125.87053 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.46957 * 125.00065 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72354 * 18 17 16 20 20 O 1.21283 * 120.00262 * 0.02562 * 18 17 16 21 21 N 1.28722 * 108.25681 * 0.26560 * 16 15 14 22 22 N 1.28628 * 110.18337 * 359.55832 * 21 16 15 23 23 C 1.46842 * 111.20249 * 298.26247 * 12 11 10 24 24 C 1.53034 * 109.52415 * 61.73939 * 23 12 11 25 25 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.52255 * 300.12495 * 9 7 2 27 27 H 1.08997 * 109.50668 * 62.43506 * 10 9 7 28 28 H 1.08997 * 109.53852 * 302.33651 * 10 9 7 29 29 H 1.09004 * 109.46036 * 299.16235 * 11 10 9 30 30 H 1.08998 * 109.45156 * 179.18961 * 11 10 9 31 31 H 1.09005 * 109.47075 * 50.00409 * 13 12 11 32 32 H 1.08999 * 109.47192 * 290.00348 * 13 12 11 33 33 H 1.08002 * 126.91321 * 0.05044 * 15 14 13 34 34 H 1.09004 * 109.47166 * 5.00331 * 17 16 15 35 35 H 1.08994 * 109.47507 * 245.00037 * 17 16 15 36 36 H 0.96999 * 120.00047 * 180.27521 * 19 18 17 37 37 H 0.97000 * 120.00317 * 0.28382 * 19 18 17 38 38 H 1.08993 * 109.46481 * 181.75638 * 23 12 11 39 39 H 1.09004 * 109.45918 * 301.72598 * 23 12 11 40 40 H 1.09008 * 109.50670 * 180.88312 * 24 23 12 41 41 H 1.08994 * 109.53614 * 60.78267 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9852 -0.0593 12 7 0.6531 -5.0195 -1.2758 13 6 0.0068 -6.3287 -1.4376 14 6 -1.0112 -6.2528 -2.5462 15 6 -0.8221 -6.5887 -3.8437 16 7 -2.0004 -6.3592 -4.4681 17 6 -2.2755 -6.5792 -5.8900 18 6 -3.4710 -7.4851 -6.0360 19 7 -3.9141 -7.8236 -7.2630 20 8 -4.0377 -7.9052 -5.0494 21 7 -2.8366 -5.9095 -3.5988 22 7 -2.2792 -5.8396 -2.4416 23 6 -0.3405 -3.9384 -1.2760 24 6 0.3752 -2.5859 -1.2525 25 1 -0.4850 0.8401 -0.0004 26 1 0.6221 -2.5566 0.8889 27 1 2.8429 -3.6321 0.9113 28 1 2.8995 -3.5845 -0.8674 29 1 0.8315 -5.0705 0.8163 30 1 2.1804 -5.8160 -0.0740 31 1 -0.4891 -6.6066 -0.5074 32 1 0.7592 -7.0772 -1.6858 33 1 0.0864 -6.9647 -4.2906 34 1 -1.4085 -7.0432 -6.3603 35 1 -2.4826 -5.6239 -6.3721 36 1 -4.6860 -8.4035 -7.3570 37 1 -3.4611 -7.4875 -8.0521 38 1 -0.9539 -4.0091 -2.1742 39 1 -0.9756 -4.0286 -0.3947 40 1 -0.3628 -1.7838 -1.2368 41 1 0.9997 -2.4886 -2.1404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462094366.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:14 Heat of formation + Delta-G solvation = 37.225703 kcal Electronic energy + Delta-G solvation = -23455.938235 eV Core-core repulsion = 19985.837432 eV Total energy + Delta-G solvation = -3470.100804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.24618 -40.55123 -39.74333 -36.21728 -35.32391 -34.76675 -33.64389 -31.83200 -31.42392 -29.64224 -28.33229 -26.19949 -23.94221 -23.61389 -23.36099 -22.19700 -21.28965 -20.28691 -18.89088 -18.48536 -18.36486 -17.29865 -17.23349 -16.68148 -16.33905 -16.07866 -15.87431 -15.78659 -15.05546 -14.77457 -14.74621 -14.51389 -14.19848 -13.80900 -13.41250 -13.36324 -13.00306 -12.80694 -12.58957 -12.46029 -12.27165 -11.97231 -11.84210 -11.76816 -11.55933 -11.32745 -10.90913 -10.77483 -10.75569 -10.59404 -10.35930 -10.15815 -9.16619 -8.04959 -6.19896 0.67001 1.35221 1.41860 1.43759 1.44173 1.51751 1.52819 2.41813 2.45413 3.17399 3.22018 3.39889 3.75184 3.84637 3.95625 4.07438 4.21249 4.28069 4.35797 4.43446 4.53559 4.61832 4.72347 4.82429 4.90943 5.00506 5.03623 5.14780 5.19297 5.27743 5.37261 5.59724 5.62632 5.63862 5.81224 6.00511 6.03261 6.25701 6.34548 6.35330 6.41666 6.93344 7.22675 7.48193 7.57240 8.99380 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.003255 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.105968 B = 8599.381530 C = 9266.101563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.098 4.098 11 C 0.064 3.936 12 N -0.527 5.527 13 C 0.140 3.860 14 C -0.040 4.040 15 C -0.011 4.011 16 N -0.284 5.284 17 C 0.088 3.912 18 C 0.502 3.498 19 N -0.824 5.824 20 O -0.581 6.581 21 N -0.104 5.104 22 N -0.310 5.310 23 C 0.084 3.916 24 C -0.091 4.091 25 H 0.258 0.742 26 H -0.020 1.020 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.131 0.869 33 H 0.245 0.755 34 H 0.193 0.807 35 H 0.156 0.844 36 H 0.412 0.588 37 H 0.425 0.575 38 H 0.054 0.946 39 H -0.004 1.004 40 H 0.051 0.949 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -18.507 -19.581 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.135 4.135 11 C -0.063 4.063 12 N -0.252 5.252 13 C 0.011 3.989 14 C -0.178 4.178 15 C -0.162 4.162 16 N -0.078 5.078 17 C -0.035 4.035 18 C 0.285 3.715 19 N -0.390 5.390 20 O -0.460 6.460 21 N -0.083 5.083 22 N -0.178 5.178 23 C -0.045 4.045 24 C -0.129 4.129 25 H 0.067 0.933 26 H -0.001 1.001 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.149 0.851 33 H 0.261 0.739 34 H 0.211 0.789 35 H 0.173 0.827 36 H 0.244 0.756 37 H 0.258 0.742 38 H 0.073 0.927 39 H 0.015 0.985 40 H 0.069 0.931 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.519 -17.996 -19.057 26.255 hybrid contribution 0.021 0.728 0.371 0.817 sum -1.498 -17.268 -18.687 25.488 Atomic orbital electron populations 1.70071 1.07459 1.27013 1.51650 1.25851 0.95629 1.02727 0.94955 0.85632 0.78311 0.78842 0.78987 1.19310 1.21319 1.19477 1.21584 0.93137 0.92039 1.50121 0.92497 1.18672 0.93201 0.93255 0.92465 1.21529 0.97770 0.93525 1.00708 1.22128 0.96055 0.99044 0.89102 1.62194 1.22558 1.02187 1.38265 1.20490 0.93116 0.92233 0.93049 1.22124 0.93233 1.05734 0.96719 1.24001 0.92892 1.06709 0.92608 1.47088 1.08546 1.41505 1.10668 1.22417 1.01290 1.04200 0.75620 1.20737 0.85516 0.81054 0.84175 1.43514 1.35397 1.53086 1.06978 1.90897 1.59335 1.55882 1.39882 1.78291 1.18672 1.17551 0.93771 1.75101 1.08692 1.18684 1.15286 1.21851 0.92593 0.92086 0.97921 1.21398 0.98901 0.94215 0.98423 0.93282 1.00145 0.92410 0.92210 0.96628 0.87699 0.94662 0.85089 0.73888 0.78946 0.82670 0.75593 0.74194 0.92718 0.98527 0.93095 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.72 11.37 21.45 0.24 -56.48 16 2 C 0.01 0.36 5.31 84.66 0.45 0.81 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.53 -30.49 8.57 25.60 0.22 -30.27 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.04 2.28 2.16 -11.46 -0.02 2.25 16 10 C -0.10 -4.11 5.32 30.65 0.16 -3.94 16 11 C 0.06 2.25 5.42 86.33 0.47 2.71 16 12 N -0.53 -18.93 4.80 -900.93 -4.32 -23.25 16 13 C 0.14 4.05 5.84 85.56 0.50 4.55 16 14 C -0.04 -1.24 5.17 41.60 0.22 -1.03 16 15 C -0.01 -0.24 11.50 83.49 0.96 0.72 16 16 N -0.28 -6.57 3.19 -351.48 -1.12 -7.69 16 17 C 0.09 0.80 6.94 85.64 0.59 1.39 16 18 C 0.50 7.30 8.11 87.66 0.71 8.01 16 19 N -0.82 -3.19 8.87 -173.53 -1.54 -4.73 16 20 O -0.58 -16.97 16.52 -3.04 -0.05 -17.02 16 21 N -0.10 -3.67 12.14 37.02 0.45 -3.22 16 22 N -0.31 -12.16 11.18 -48.60 -0.54 -12.70 16 23 C 0.08 3.79 4.90 86.33 0.42 4.21 16 24 C -0.09 -4.76 5.12 30.65 0.16 -4.60 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 26 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.10 2.79 8.12 -2.39 -0.02 2.77 16 31 H 0.04 1.11 8.08 -2.38 -0.02 1.09 16 32 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.24 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.19 -0.54 8.07 -2.38 -0.02 -0.56 16 35 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.41 1.67 8.93 -92.71 -0.83 0.84 16 37 H 0.43 -2.08 8.83 -92.71 -0.82 -2.90 16 38 H 0.05 2.50 5.80 -2.39 -0.01 2.49 16 39 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.05 3.04 6.17 -2.38 -0.01 3.03 16 41 H 0.03 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -92.84 336.56 -0.61 -93.45 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -0.58 Total: -0.37 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.84 Total: -15.17 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -6.84 Total: -108.07 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -92.84 -0.61 -93.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462094366.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.677 kcal (2) G-P(sol) polarization free energy of solvation -92.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds