Wall clock time and date at job start Tue Mar 31 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30836 * 125.95840 * 2 1 4 4 C 1.33244 * 109.82212 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.51973 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47109 * 90.00425 * 5 4 3 7 7 O 1.21283 * 120.00228 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00196 * 179.97438 * 6 5 4 9 9 C 1.47428 * 125.64887 * 355.09661 * 8 6 5 10 10 C 1.54912 * 104.83298 * 155.60698 * 9 8 6 11 11 C 1.55152 * 101.58021 * 37.00957 * 10 9 8 12 12 C 1.47027 * 125.64966 * 174.78687 * 8 6 5 13 13 H 1.08992 * 109.88147 * 300.74139 * 12 8 6 14 14 C 1.53003 * 109.88103 * 61.91325 * 12 8 6 15 15 N 1.46499 * 109.47056 * 185.24246 * 14 12 8 16 16 C 1.36933 * 120.00024 * 185.00544 * 15 14 12 17 17 H 1.08006 * 119.99754 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00274 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00515 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99650 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47178 * 89.99939 * 20 18 16 22 22 H 1.48509 * 109.46783 * 210.00138 * 20 18 16 23 23 H 1.48497 * 109.47176 * 329.99522 * 20 18 16 24 24 N 1.30713 * 108.95020 * 0.26865 * 4 3 2 25 25 N 1.34422 * 125.95965 * 180.02562 * 2 1 3 26 26 H 0.96996 * 126.82613 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.46977 * 89.97685 * 1 2 3 28 28 H 1.09000 * 109.47403 * 209.97549 * 1 2 3 29 29 H 1.08998 * 109.47280 * 329.97741 * 1 2 3 30 30 H 1.08995 * 109.47678 * 330.00125 * 5 4 3 31 31 H 1.09003 * 109.47232 * 209.99850 * 5 4 3 32 32 H 1.08998 * 110.36953 * 274.44751 * 9 8 6 33 33 H 1.09006 * 110.36209 * 36.66112 * 9 8 6 34 34 H 1.09000 * 111.00358 * 155.09004 * 10 9 8 35 35 H 1.09009 * 111.00139 * 278.89589 * 10 9 8 36 36 H 1.09004 * 110.72018 * 82.86554 * 11 10 9 37 37 H 1.09002 * 110.71916 * 205.95476 * 11 10 9 38 38 H 1.09005 * 109.46658 * 305.24244 * 14 12 8 39 39 H 1.08989 * 109.47479 * 65.23946 * 14 12 8 40 40 H 0.96997 * 119.99751 * 5.01420 * 15 14 12 41 41 H 0.96998 * 120.00472 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7372 1.6236 -0.0013 6 6 5.1319 1.9354 1.4193 7 8 4.5140 1.4470 2.3415 8 7 6.1716 2.7571 1.6649 9 6 7.0685 3.3355 0.6479 10 6 7.6349 4.6200 1.3032 11 6 7.8008 4.1698 2.7786 12 6 6.5952 3.2301 2.9910 13 1 5.7804 3.7745 3.4681 14 6 7.0094 2.0407 3.8598 15 7 7.3098 2.5075 5.2156 16 6 7.8025 1.6333 6.1473 17 1 7.9701 0.5997 5.8824 18 6 8.0866 2.0754 7.4320 19 7 8.5607 1.2352 8.3274 20 14 7.7961 3.8629 7.8902 21 1 6.4137 4.0228 8.4083 22 1 8.7674 4.2696 8.9374 23 1 7.9765 4.7174 6.6892 24 7 3.6194 -0.6168 -0.0067 25 7 2.2964 -1.0881 -0.0005 26 1 2.0093 -2.0146 -0.0006 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3634 0.8898 0.5142 30 1 4.4698 2.5470 -0.5151 31 1 5.5740 1.1509 -0.5154 32 1 7.8756 2.6411 0.4148 33 1 6.5093 3.5829 -0.2544 34 1 8.5964 4.8899 0.8665 35 1 6.9264 5.4445 1.2229 36 1 8.7385 3.6308 2.9143 37 1 7.7490 5.0260 3.4512 38 1 6.1952 1.3168 3.8968 39 1 7.8949 1.5699 3.4331 40 1 7.1595 3.4358 5.4533 41 1 8.7596 1.5443 9.2251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482056256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:54 Heat of formation + Delta-G solvation = 36.422289 kcal Electronic energy + Delta-G solvation = -23369.102108 eV Core-core repulsion = 19898.966465 eV Total energy + Delta-G solvation = -3470.135642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.19805 -41.22719 -38.71087 -36.60145 -34.75473 -33.74841 -33.38287 -32.75665 -31.13308 -30.21998 -28.62290 -26.83498 -24.77120 -23.59977 -22.71179 -22.04190 -21.44889 -20.36320 -19.46336 -18.90078 -18.22571 -17.55028 -16.68953 -16.51422 -16.28792 -15.83515 -15.44059 -15.27673 -15.08624 -14.86217 -14.58972 -14.11442 -13.93916 -13.73751 -13.65417 -13.63143 -13.35311 -13.05803 -12.98293 -12.81081 -12.75375 -12.15213 -12.05132 -11.91049 -11.82114 -11.56689 -11.31306 -11.14705 -11.06164 -10.87536 -10.48619 -9.69155 -9.37845 -8.08096 -5.43810 0.53588 1.33261 1.40044 1.46703 1.54091 1.57505 1.71649 2.12563 2.44707 2.97706 3.22159 3.44703 3.52634 3.61784 3.75152 3.81851 3.96903 3.96986 4.29405 4.31130 4.34635 4.38300 4.55002 4.69023 4.71674 4.77094 4.85986 4.93986 5.02744 5.04579 5.11433 5.18966 5.21199 5.31431 5.38698 5.44819 5.66610 6.14417 6.18115 6.51675 6.99633 7.03308 7.12313 7.72687 7.97023 9.13781 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003776 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.361457 B = 7412.626678 C = 8427.622437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.566 5.566 4 C 0.234 3.766 5 C -0.033 4.033 6 C 0.526 3.474 7 O -0.582 6.582 8 N -0.610 5.610 9 C 0.089 3.911 10 C -0.118 4.118 11 C -0.124 4.124 12 C 0.134 3.866 13 H 0.060 0.940 14 C 0.154 3.846 15 N -0.748 5.748 16 C -0.243 4.243 17 H 0.044 0.956 18 C -0.063 4.063 19 N -0.984 5.984 20 Si 0.962 3.038 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.241 1.241 24 N -0.341 5.341 25 N -0.476 5.476 26 H 0.454 0.546 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.002 0.998 39 H 0.023 0.977 40 H 0.368 0.632 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 5.796 -27.221 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.007 3.993 3 N -0.297 5.297 4 C -0.049 4.049 5 C -0.075 4.075 6 C 0.314 3.686 7 O -0.462 6.462 8 N -0.344 5.344 9 C -0.032 4.032 10 C -0.155 4.155 11 C -0.162 4.162 12 C 0.029 3.971 13 H 0.078 0.922 14 C 0.027 3.973 15 N -0.395 5.395 16 C -0.374 4.374 17 H 0.062 0.938 18 C -0.254 4.254 19 N -0.634 5.634 20 Si 0.787 3.213 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.165 1.165 24 N -0.171 5.171 25 N -0.196 5.196 26 H 0.303 0.697 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.020 0.980 39 H 0.041 0.959 40 H 0.202 0.798 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.969 5.237 -26.730 29.752 hybrid contribution -0.315 -0.520 1.364 1.494 sum -12.284 4.717 -25.366 28.575 Atomic orbital electron populations 1.20645 0.79982 1.06252 1.06346 1.25284 0.98376 0.82021 0.93641 1.70286 1.01538 1.31212 1.26641 1.23718 0.93576 0.90084 0.97537 1.19977 0.93916 1.00020 0.93576 1.20579 0.78880 0.77504 0.91601 1.90760 1.54814 1.52414 1.48169 1.48548 1.29771 1.47569 1.08505 1.22806 0.93479 0.95288 0.91589 1.22813 1.03528 0.96700 0.92495 1.22672 0.95883 0.98217 0.99404 1.21622 0.97616 0.93997 0.83819 0.92233 1.20943 0.96312 0.95768 0.84285 1.42430 1.79467 1.08837 1.08743 1.18957 1.34576 0.92147 0.91700 0.93761 1.25601 1.01118 1.03139 0.95539 1.69900 1.52105 1.36606 1.04792 0.85320 0.77474 0.79863 0.78627 1.20819 1.21313 1.16502 1.77872 0.98939 1.12748 1.27530 1.47863 1.03281 1.11040 1.57448 0.69728 0.86407 0.87371 0.88540 0.82847 0.83925 0.89918 0.86471 0.86901 0.89230 0.90938 0.89729 0.98009 0.95882 0.79786 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.51 71.24 0.75 0.08 16 2 C 0.28 5.95 8.24 138.23 1.14 7.09 16 3 N -0.57 -15.81 11.19 -179.73 -2.01 -17.82 16 4 C 0.23 6.77 6.63 138.63 0.92 7.69 16 5 C -0.03 -0.74 5.26 29.10 0.15 -0.59 16 6 C 0.53 16.92 7.66 87.66 0.67 17.59 16 7 O -0.58 -26.10 14.84 -3.04 -0.05 -26.14 16 8 N -0.61 -16.80 3.06 -788.03 -2.41 -19.21 16 9 C 0.09 1.37 6.74 86.86 0.59 1.95 16 10 C -0.12 -1.70 7.08 31.99 0.23 -1.47 16 11 C -0.12 -3.11 6.24 31.78 0.20 -2.91 16 12 C 0.13 4.52 2.94 45.34 0.13 4.65 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.15 7.09 5.66 86.38 0.49 7.57 16 15 N -0.75 -39.02 5.22 -343.46 -1.79 -40.81 16 16 C -0.24 -15.25 10.47 84.03 0.88 -14.37 16 17 H 0.04 3.09 8.06 -2.91 -0.02 3.07 16 18 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.98 -66.21 13.97 21.65 0.30 -65.91 16 20 Si 0.96 47.20 27.74 68.60 1.90 49.11 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.24 -10.33 6.52 99.48 0.65 -9.68 16 24 N -0.34 -10.12 12.80 -51.34 -0.66 -10.78 16 25 N -0.48 -10.22 7.45 -50.70 -0.38 -10.60 16 26 H 0.45 6.02 8.96 -213.10 -1.91 4.11 16 27 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.15 2.29 7.95 -2.39 -0.02 2.27 16 31 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 0.92 7.46 -2.38 -0.02 0.90 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 2.02 7.76 -2.38 -0.02 2.00 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.00 0.10 6.56 -2.38 -0.02 0.09 16 39 H 0.02 1.07 8.02 -2.39 -0.02 1.05 16 40 H 0.37 17.73 5.48 -92.71 -0.51 17.23 16 41 H 0.26 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -96.24 341.76 0.10 -96.14 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -1.41 Total: 22.19 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 6.61 Total: 23.84 kcal Atomic # 7 Polarization: -158.18 SS G_CDS: -6.95 Total: -165.13 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.90 Total: 49.11 kcal Total: -96.24 0.10 -96.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482056256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.561 kcal (2) G-P(sol) polarization free energy of solvation -96.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds