Wall clock time and date at job start Tue Mar 31 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46978 * 2 1 4 4 C 1.53000 * 109.47064 * 119.99904 * 2 1 3 5 5 N 1.46498 * 109.47012 * 174.99819 * 4 2 1 6 6 C 1.34779 * 120.00180 * 180.02562 * 5 4 2 7 7 O 1.21536 * 119.99795 * 359.97438 * 6 5 4 8 8 C 1.47883 * 120.00031 * 180.02562 * 6 5 4 9 9 C 1.36293 * 119.75722 * 354.54415 * 8 6 5 10 10 C 1.40410 * 119.90613 * 179.75708 * 9 8 6 11 11 C 1.36111 * 119.41473 * 0.49378 * 10 9 8 12 12 C 1.41246 * 119.51164 * 359.75819 * 11 10 9 13 13 O 1.21959 * 119.95836 * 179.97438 * 12 11 10 14 14 N 1.34674 * 120.08292 * 0.02562 * 12 11 10 15 15 C 1.46502 * 119.69838 * 179.97438 * 14 12 11 16 16 N 1.46498 * 109.47161 * 239.99761 * 2 1 3 17 17 C 1.46497 * 120.00235 * 300.00549 * 16 2 1 18 18 C 1.36933 * 119.99942 * 119.99677 * 16 2 1 19 19 H 1.08005 * 119.99874 * 24.80156 * 18 16 2 20 20 C 1.38815 * 120.00204 * 204.80195 * 18 16 2 21 21 N 1.31614 * 120.00079 * 13.85094 * 20 18 16 22 22 Si 1.86800 * 120.00019 * 193.84790 * 20 18 16 23 23 H 1.48501 * 109.47231 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47058 * 119.99782 * 22 20 18 25 25 H 1.48499 * 109.46982 * 240.00019 * 22 20 18 26 26 H 1.08994 * 109.47558 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.47018 * 299.99489 * 1 2 3 28 28 H 1.09007 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47028 * 295.00188 * 4 2 1 30 30 H 1.09005 * 109.47063 * 55.00321 * 4 2 1 31 31 H 0.97001 * 120.00092 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.04695 * 359.97438 * 9 8 6 33 33 H 1.07999 * 120.29285 * 180.23050 * 10 9 8 34 34 H 1.08004 * 120.24487 * 179.73225 * 11 10 9 35 35 H 1.08998 * 109.46677 * 241.86333 * 15 14 12 36 36 H 1.08993 * 109.47425 * 1.86556 * 15 14 12 37 37 H 1.09005 * 109.46881 * 121.87455 * 15 14 12 38 38 H 1.09000 * 109.47861 * 90.46830 * 17 16 2 39 39 H 1.08999 * 109.47018 * 210.47132 * 17 16 2 40 40 H 1.09000 * 109.46940 * 330.46390 * 17 16 2 41 41 H 0.97002 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5687 -1.8851 3.1415 8 6 5.6469 -1.5348 2.1316 9 6 6.3105 -1.1221 1.0150 10 6 7.7103 -1.2162 0.9576 11 6 8.3898 -1.7303 2.0190 12 6 7.6768 -2.1555 3.1618 13 8 8.2774 -2.6179 4.1172 14 7 6.3345 -2.0520 3.1971 15 6 5.6034 -2.4962 4.3865 16 7 2.0183 -0.6906 -1.1961 17 6 1.6644 -2.0932 -1.4280 18 6 2.8055 -0.0252 -2.0975 19 1 3.3914 0.8245 -1.7790 20 6 2.8507 -0.4425 -3.4207 21 7 1.9499 -1.2876 -3.8753 22 14 4.1898 0.1953 -4.5561 23 1 5.0720 1.1260 -3.8072 24 1 4.9928 -0.9458 -5.0645 25 1 3.5696 0.9124 -5.6991 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -0.1583 2.1369 30 1 1.6054 -1.7198 1.2951 31 1 3.9824 -0.4622 0.4319 32 1 5.7607 -0.7199 0.1769 33 1 8.2427 -0.8876 0.0773 34 1 9.4662 -1.8129 1.9875 35 1 4.9305 -3.3101 4.1164 36 1 6.3108 -2.8441 5.1390 37 1 5.0245 -1.6647 4.7887 38 1 0.7420 -2.1444 -2.0065 39 1 2.4666 -2.5840 -1.9790 40 1 1.5213 -2.5948 -0.4709 41 1 1.9816 -1.5796 -4.7998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485351038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:17 Heat of formation + Delta-G solvation = -5.931454 kcal Electronic energy + Delta-G solvation = -24101.286997 eV Core-core repulsion = 20597.022008 eV Total energy + Delta-G solvation = -3504.264990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.55083 -39.41865 -37.06644 -36.63829 -34.84569 -33.84850 -32.30249 -30.38072 -29.36610 -27.62271 -26.17770 -26.13442 -24.40164 -23.17644 -22.59118 -20.76840 -19.58603 -17.88941 -17.40786 -17.05529 -16.92827 -16.29580 -15.72802 -15.45080 -15.38248 -14.68377 -14.65314 -14.05333 -13.99457 -13.16840 -12.98826 -12.88204 -12.73296 -12.50506 -12.47447 -12.18771 -12.10809 -11.74061 -11.53019 -11.18587 -10.97503 -10.87819 -10.52297 -10.38772 -10.25088 -10.18739 -10.04743 -9.89851 -9.72013 -8.86444 -8.69165 -8.09918 -6.91198 -5.89279 -3.37692 0.35982 1.58772 2.41508 2.86282 3.24467 3.26184 3.32595 3.36068 3.60744 4.33483 4.48608 4.52296 4.76153 5.07507 5.15471 5.23376 5.28271 5.42252 5.44939 5.47039 5.74553 5.75940 5.79517 5.90286 5.93535 6.06550 6.10415 6.14243 6.28530 6.32450 6.54892 6.67404 6.72323 6.86511 6.94281 7.23210 7.57891 7.61458 7.65073 7.90814 8.16722 8.24768 9.06707 9.69577 10.20236 11.15925 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.005030 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.145121 B = 5565.017461 C = 6977.653961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.071 0.929 4 C 0.105 3.895 5 N -0.683 5.683 6 C 0.547 3.453 7 O -0.539 6.539 8 C 0.121 3.879 9 C -0.180 4.180 10 C -0.022 4.022 11 C -0.225 4.225 12 C 0.512 3.488 13 O -0.556 6.556 14 N -0.477 5.477 15 C 0.066 3.934 16 N -0.593 5.593 17 C 0.163 3.837 18 C -0.269 4.269 19 H 0.069 0.931 20 C 0.010 3.990 21 N -0.898 5.898 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.414 0.586 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.045 0.955 40 H -0.002 1.002 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 1.580 9.002 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.020 4.020 5 N -0.334 5.334 6 C 0.331 3.669 7 O -0.418 6.418 8 C 0.010 3.990 9 C -0.205 4.205 10 C -0.043 4.043 11 C -0.247 4.247 12 C 0.314 3.686 13 O -0.439 6.439 14 N -0.188 5.188 15 C -0.075 4.075 16 N -0.316 5.316 17 C 0.018 3.982 18 C -0.398 4.398 19 H 0.087 0.913 20 C -0.190 4.190 21 N -0.541 5.541 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.217 1.217 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.253 0.747 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.017 0.983 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.188 0.867 10.137 11.420 hybrid contribution 0.737 0.438 -1.394 1.637 sum 5.925 1.306 8.742 10.641 Atomic orbital electron populations 1.22171 0.97216 1.01459 1.00724 1.20646 0.92781 0.95567 0.86313 0.91126 1.22112 0.78099 1.01895 0.99882 1.45795 1.08926 1.56499 1.22209 1.17821 0.85436 0.79855 0.83748 1.90788 1.69486 1.48317 1.33196 1.20250 0.92950 0.96998 0.88796 1.21118 0.95198 1.06184 0.97964 1.21467 0.93477 0.91454 0.97928 1.22360 1.01693 1.06656 0.94006 1.17318 0.80316 0.81266 0.89689 1.90913 1.66151 1.48727 1.38120 1.45384 1.08234 1.49928 1.15276 1.22283 0.96624 1.02351 0.86217 1.44005 1.58166 1.07901 1.21527 1.20709 0.99851 0.83380 0.94228 1.19197 1.18487 1.13375 0.88766 0.91301 1.25068 0.97872 0.99411 0.96634 1.70069 1.33418 1.35663 1.14990 0.86273 0.81512 0.78181 0.81035 1.20152 1.21549 1.21711 0.92043 0.93939 0.93122 0.91837 0.91493 0.74732 0.82538 0.83814 0.83060 0.89455 0.89161 0.89706 0.95726 0.93632 0.98327 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.19 37.16 0.34 -2.17 16 2 C 0.16 2.67 2.87 -67.93 -0.20 2.47 16 3 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 4 C 0.11 1.62 4.92 -4.04 -0.02 1.60 16 5 N -0.68 -10.14 5.33 -61.24 -0.33 -10.46 16 6 C 0.55 8.22 7.70 -12.31 -0.09 8.12 16 7 O -0.54 -9.02 13.20 5.33 0.07 -8.95 16 8 C 0.12 1.66 6.63 -82.33 -0.55 1.11 16 9 C -0.18 -2.13 9.49 -39.46 -0.37 -2.50 16 10 C -0.02 -0.23 10.08 -39.53 -0.40 -0.62 16 11 C -0.22 -2.69 10.00 -39.20 -0.39 -3.08 16 12 C 0.51 7.72 7.43 -15.16 -0.11 7.61 16 13 O -0.56 -9.94 16.39 4.96 0.08 -9.86 16 14 N -0.48 -6.84 3.02 -122.80 -0.37 -7.21 16 15 C 0.07 0.88 8.93 59.85 0.53 1.42 16 16 N -0.59 -12.54 2.28 -173.49 -0.40 -12.93 16 17 C 0.16 3.60 8.04 59.85 0.48 4.08 16 18 C -0.27 -6.29 9.28 -15.06 -0.14 -6.43 16 19 H 0.07 1.53 7.84 -52.48 -0.41 1.12 16 20 C 0.01 0.25 5.04 -17.43 -0.09 0.16 16 21 N -0.90 -24.09 10.90 55.49 0.61 -23.49 16 22 Si 0.90 19.61 29.58 -169.99 -5.03 14.59 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.11 6.88 -51.93 -0.36 0.75 16 31 H 0.41 6.09 5.89 -40.82 -0.24 5.85 16 32 H 0.16 1.74 6.33 -52.49 -0.33 1.40 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.09 1.18 7.21 -51.93 -0.37 0.81 16 36 H 0.09 1.18 6.86 -51.93 -0.36 0.82 16 37 H 0.08 1.10 7.24 -51.93 -0.38 0.72 16 38 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 39 H 0.04 1.10 7.18 -51.93 -0.37 0.73 16 40 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 41 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 335.58 15.07 5.06 5.06 Total: -1.00 -29.46 335.58 -6.92 -36.38 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.61 Total: 5.11 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.00 Total: 11.77 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.49 Total: -54.09 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.15 Total: -18.81 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.46 -6.92 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485351038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.447 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds