Wall clock time and date at job start Tue Mar 31 2020 02:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46978 * 2 1 4 4 C 1.53000 * 109.47064 * 119.99904 * 2 1 3 5 5 N 1.46498 * 109.47012 * 174.99819 * 4 2 1 6 6 C 1.34779 * 120.00180 * 180.02562 * 5 4 2 7 7 O 1.21536 * 119.99795 * 359.97438 * 6 5 4 8 8 C 1.47883 * 120.00031 * 180.02562 * 6 5 4 9 9 C 1.36293 * 119.75722 * 354.54415 * 8 6 5 10 10 C 1.40410 * 119.90613 * 179.75708 * 9 8 6 11 11 C 1.36111 * 119.41473 * 0.49378 * 10 9 8 12 12 C 1.41246 * 119.51164 * 359.75819 * 11 10 9 13 13 O 1.21959 * 119.95836 * 179.97438 * 12 11 10 14 14 N 1.34674 * 120.08292 * 0.02562 * 12 11 10 15 15 C 1.46502 * 119.69838 * 179.97438 * 14 12 11 16 16 N 1.46498 * 109.47161 * 239.99761 * 2 1 3 17 17 C 1.46497 * 120.00235 * 300.00549 * 16 2 1 18 18 C 1.36933 * 119.99942 * 119.99677 * 16 2 1 19 19 H 1.08005 * 119.99874 * 24.80156 * 18 16 2 20 20 C 1.38815 * 120.00204 * 204.80195 * 18 16 2 21 21 N 1.31614 * 120.00079 * 13.85094 * 20 18 16 22 22 Si 1.86800 * 120.00019 * 193.84790 * 20 18 16 23 23 H 1.48501 * 109.47231 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47058 * 119.99782 * 22 20 18 25 25 H 1.48499 * 109.46982 * 240.00019 * 22 20 18 26 26 H 1.08994 * 109.47558 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.47018 * 299.99489 * 1 2 3 28 28 H 1.09007 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47028 * 295.00188 * 4 2 1 30 30 H 1.09005 * 109.47063 * 55.00321 * 4 2 1 31 31 H 0.97001 * 120.00092 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.04695 * 359.97438 * 9 8 6 33 33 H 1.07999 * 120.29285 * 180.23050 * 10 9 8 34 34 H 1.08004 * 120.24487 * 179.73225 * 11 10 9 35 35 H 1.08998 * 109.46677 * 241.86333 * 15 14 12 36 36 H 1.08993 * 109.47425 * 1.86556 * 15 14 12 37 37 H 1.09005 * 109.46881 * 121.87455 * 15 14 12 38 38 H 1.09000 * 109.47861 * 90.46830 * 17 16 2 39 39 H 1.08999 * 109.47018 * 210.47132 * 17 16 2 40 40 H 1.09000 * 109.46940 * 330.46390 * 17 16 2 41 41 H 0.97002 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5687 -1.8851 3.1415 8 6 5.6469 -1.5348 2.1316 9 6 6.3105 -1.1221 1.0150 10 6 7.7103 -1.2162 0.9576 11 6 8.3898 -1.7303 2.0190 12 6 7.6768 -2.1555 3.1618 13 8 8.2774 -2.6179 4.1172 14 7 6.3345 -2.0520 3.1971 15 6 5.6034 -2.4962 4.3865 16 7 2.0183 -0.6906 -1.1961 17 6 1.6644 -2.0932 -1.4280 18 6 2.8055 -0.0252 -2.0975 19 1 3.3914 0.8245 -1.7790 20 6 2.8507 -0.4425 -3.4207 21 7 1.9499 -1.2876 -3.8753 22 14 4.1898 0.1953 -4.5561 23 1 5.0720 1.1260 -3.8072 24 1 4.9928 -0.9458 -5.0645 25 1 3.5696 0.9124 -5.6991 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.7516 -0.1583 2.1369 30 1 1.6054 -1.7198 1.2951 31 1 3.9824 -0.4622 0.4319 32 1 5.7607 -0.7199 0.1769 33 1 8.2427 -0.8876 0.0773 34 1 9.4662 -1.8129 1.9875 35 1 4.9305 -3.3101 4.1164 36 1 6.3108 -2.8441 5.1390 37 1 5.0245 -1.6647 4.7887 38 1 0.7420 -2.1444 -2.0065 39 1 2.4666 -2.5840 -1.9790 40 1 1.5213 -2.5948 -0.4709 41 1 1.9816 -1.5796 -4.7998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485351038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:16 Heat of formation + Delta-G solvation = -24.340070 kcal Electronic energy + Delta-G solvation = -24102.085255 eV Core-core repulsion = 20597.022008 eV Total energy + Delta-G solvation = -3505.063247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.62723 -40.62249 -38.50040 -37.82325 -36.02745 -35.12534 -33.83539 -31.64973 -30.85678 -28.66942 -27.95635 -27.37356 -25.53975 -24.82755 -23.62833 -21.93692 -21.03568 -19.10556 -18.72568 -18.48682 -17.96939 -17.44516 -17.04427 -16.86009 -16.59934 -16.09782 -15.59539 -15.58005 -15.27674 -14.62434 -14.48152 -14.25462 -13.89583 -13.80869 -13.51786 -13.46914 -13.13455 -13.02677 -12.84304 -12.80104 -12.62999 -12.49986 -12.21062 -12.00530 -11.74546 -11.46409 -11.42336 -11.14831 -10.89043 -10.56520 -10.08242 -9.16351 -8.71126 -7.75529 -5.24155 -0.64092 0.57993 1.34807 1.54690 1.58392 1.66299 1.71970 2.11378 2.57709 2.58516 3.37327 3.41978 3.54763 3.68931 3.85987 4.05471 4.12949 4.24036 4.38274 4.39346 4.43844 4.63250 4.70700 4.76545 4.79807 4.85657 4.96073 4.96615 5.08451 5.17379 5.26890 5.29796 5.37611 5.43822 5.53369 5.74333 5.78440 5.87123 6.41110 6.43765 6.80849 7.00095 7.22654 7.93345 8.40483 9.29207 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.005030 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.145121 B = 5565.017461 C = 6977.653961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.155 3.845 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.682 5.682 6 C 0.550 3.450 7 O -0.560 6.560 8 C 0.098 3.902 9 C -0.161 4.161 10 C -0.007 4.007 11 C -0.226 4.226 12 C 0.498 3.502 13 O -0.597 6.597 14 N -0.481 5.481 15 C 0.071 3.929 16 N -0.601 5.601 17 C 0.183 3.817 18 C -0.255 4.255 19 H 0.087 0.913 20 C -0.049 4.049 21 N -0.939 5.939 22 Si 0.958 3.042 23 H -0.251 1.251 24 H -0.299 1.299 25 H -0.307 1.307 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.416 0.584 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.086 0.914 38 H -0.006 1.006 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 3.170 9.179 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.098 0.902 4 C -0.009 4.009 5 N -0.333 5.333 6 C 0.335 3.665 7 O -0.441 6.441 8 C -0.012 4.012 9 C -0.185 4.185 10 C -0.028 4.028 11 C -0.248 4.248 12 C 0.302 3.698 13 O -0.484 6.484 14 N -0.192 5.192 15 C -0.070 4.070 16 N -0.325 5.325 17 C 0.037 3.963 18 C -0.385 4.385 19 H 0.105 0.895 20 C -0.244 4.244 21 N -0.585 5.585 22 Si 0.788 3.212 23 H -0.174 1.174 24 H -0.226 1.226 25 H -0.235 1.235 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.255 0.745 32 H 0.187 0.813 33 H 0.202 0.798 34 H 0.189 0.811 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.012 0.988 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.422 2.500 10.335 12.422 hybrid contribution 0.309 -0.011 -1.411 1.445 sum 6.732 2.489 8.924 11.452 Atomic orbital electron populations 1.22070 0.96305 1.01192 1.01342 1.20814 0.93443 0.95807 0.85153 0.90177 1.21924 0.78378 1.01170 0.99432 1.45730 1.08681 1.56583 1.22264 1.17957 0.86002 0.79225 0.83277 1.90780 1.70103 1.49182 1.33989 1.20179 0.92272 0.99126 0.89590 1.21435 0.96110 1.03867 0.97132 1.21838 0.92683 0.89747 0.98550 1.22551 1.02643 1.06428 0.93175 1.17873 0.80438 0.81247 0.90292 1.90886 1.66838 1.50956 1.39693 1.45411 1.08288 1.49933 1.15584 1.22204 0.96367 1.02204 0.86215 1.44160 1.58318 1.07710 1.22274 1.20356 0.97308 0.84314 0.94287 1.19646 1.17606 1.12608 0.88676 0.89502 1.25766 0.99858 1.00426 0.98355 1.70240 1.35615 1.38030 1.14644 0.85338 0.79474 0.77462 0.78963 1.17416 1.22607 1.23475 0.94192 0.90480 0.93887 0.89873 0.92713 0.74512 0.81320 0.79797 0.81131 0.89985 0.89419 0.89531 0.98782 0.96288 0.96205 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.19 71.98 0.66 -3.86 16 2 C 0.16 4.95 2.87 44.99 0.13 5.08 16 3 H 0.08 2.44 7.88 -2.39 -0.02 2.42 16 4 C 0.12 3.27 4.92 86.38 0.42 3.70 16 5 N -0.68 -18.58 5.33 -465.95 -2.48 -21.06 16 6 C 0.55 15.58 7.70 86.80 0.67 16.25 16 7 O -0.56 -18.14 13.20 -3.83 -0.05 -18.19 16 8 C 0.10 2.51 6.63 40.45 0.27 2.77 16 9 C -0.16 -3.27 9.49 22.35 0.21 -3.06 16 10 C -0.01 -0.12 10.08 22.30 0.22 0.11 16 11 C -0.23 -4.79 10.00 22.51 0.23 -4.57 16 12 C 0.50 14.52 7.43 85.00 0.63 15.15 16 13 O -0.60 -21.39 16.39 -5.18 -0.08 -21.48 16 14 N -0.48 -13.38 3.02 -660.60 -1.99 -15.38 16 15 C 0.07 1.90 8.93 127.77 1.14 3.04 16 16 N -0.60 -24.62 2.28 -702.79 -1.60 -26.22 16 17 C 0.18 8.07 8.04 127.77 1.03 9.10 16 18 C -0.26 -11.46 9.28 84.03 0.78 -10.68 16 19 H 0.09 3.55 7.84 -2.91 -0.02 3.53 16 20 C -0.05 -2.39 5.04 84.86 0.43 -1.96 16 21 N -0.94 -51.26 10.90 21.65 0.24 -51.02 16 22 Si 0.96 39.58 29.58 68.60 2.03 41.61 16 23 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 24 H -0.30 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.31 -13.40 7.11 99.48 0.71 -12.69 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.35 7.67 -2.38 -0.02 1.34 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 1.71 6.88 -2.38 -0.02 1.69 16 31 H 0.42 10.98 5.89 -92.71 -0.55 10.44 16 32 H 0.17 3.06 6.33 -2.91 -0.02 3.04 16 33 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.08 2.25 7.21 -2.39 -0.02 2.23 16 36 H 0.09 2.36 6.86 -2.39 -0.02 2.34 16 37 H 0.09 2.24 7.24 -2.38 -0.02 2.22 16 38 H -0.01 -0.31 7.57 -2.39 -0.02 -0.33 16 39 H 0.02 0.91 7.18 -2.39 -0.02 0.89 16 40 H 0.02 0.77 6.53 -2.39 -0.02 0.75 16 41 H 0.24 13.21 8.31 -92.71 -0.77 12.44 16 Total: -1.00 -64.51 335.58 3.38 -61.13 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.50 Total: 19.57 kcal Atomic # 6 Polarization: 24.23 SS G_CDS: 6.82 Total: 31.06 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -5.84 Total: -113.69 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.14 Total: -39.67 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -64.51 3.38 -61.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485351038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.788 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds