Wall clock time and date at job start Tue Mar 31 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46831 * 2 1 4 4 C 1.52998 * 109.47031 * 240.00203 * 2 1 3 5 5 N 1.46499 * 109.46833 * 184.99859 * 4 2 1 6 6 C 1.34777 * 119.99997 * 180.02562 * 5 4 2 7 7 O 1.21541 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.47877 * 120.00243 * 179.97438 * 6 5 4 9 9 C 1.36302 * 119.75824 * 353.84404 * 8 6 5 10 10 C 1.40400 * 119.90807 * 179.75609 * 9 8 6 11 11 C 1.36112 * 119.41882 * 0.49158 * 10 9 8 12 12 C 1.41247 * 119.50564 * 359.75681 * 11 10 9 13 13 O 1.21965 * 119.95433 * 180.02562 * 12 11 10 14 14 N 1.34674 * 120.08801 * 0.02562 * 12 11 10 15 15 C 1.46500 * 119.70100 * 179.97438 * 14 12 11 16 16 N 1.46500 * 109.46908 * 120.00058 * 2 1 3 17 17 C 1.46490 * 119.99910 * 60.00489 * 16 2 1 18 18 C 1.36932 * 119.99625 * 239.99751 * 16 2 1 19 19 H 1.08003 * 120.00801 * 24.71226 * 18 16 2 20 20 C 1.38820 * 120.00060 * 204.70707 * 18 16 2 21 21 N 1.31623 * 119.99526 * 6.61790 * 20 18 16 22 22 Si 1.86801 * 120.00239 * 186.61671 * 20 18 16 23 23 H 1.48501 * 109.47167 * 90.00069 * 22 20 18 24 24 H 1.48501 * 109.46789 * 210.00088 * 22 20 18 25 25 H 1.48500 * 109.47206 * 329.99853 * 22 20 18 26 26 H 1.08995 * 109.46896 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46919 * 300.00115 * 1 2 3 28 28 H 1.09001 * 109.46852 * 59.99678 * 1 2 3 29 29 H 1.09001 * 109.46884 * 65.00239 * 4 2 1 30 30 H 1.08991 * 109.47518 * 304.99821 * 4 2 1 31 31 H 0.96997 * 120.00139 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.04406 * 359.97438 * 9 8 6 33 33 H 1.08001 * 120.29646 * 180.22608 * 10 9 8 34 34 H 1.07995 * 120.24594 * 179.73623 * 11 10 9 35 35 H 1.09000 * 109.47601 * 244.50370 * 15 14 12 36 36 H 1.09005 * 109.47079 * 4.51065 * 15 14 12 37 37 H 1.09004 * 109.46302 * 124.50605 * 15 14 12 38 38 H 1.09000 * 109.47560 * 95.09178 * 17 16 2 39 39 H 1.09004 * 109.47398 * 215.08698 * 17 16 2 40 40 H 1.08996 * 109.47512 * 335.08592 * 17 16 2 41 41 H 0.97000 * 119.99472 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1731 -1.4281 -2.1912 7 8 3.5688 -1.8832 -3.1424 8 6 5.6469 -1.5337 -2.1322 9 6 6.3302 -0.9126 -1.1296 10 6 7.7291 -1.0150 -1.0677 11 6 8.3900 -1.7285 -2.0200 12 6 7.6578 -2.3578 -3.0510 13 8 8.2416 -2.9995 -3.9082 14 7 6.3159 -2.2502 -3.0887 15 6 5.5649 -2.9059 -4.1621 16 7 2.0183 -0.6906 1.1962 17 6 1.6645 -2.0931 1.4279 18 6 2.8056 -0.0251 2.0975 19 1 2.7519 1.0511 2.1703 20 6 3.6728 -0.7338 2.9178 21 7 3.8350 -2.0280 2.7418 22 14 4.6094 0.1495 4.2714 23 1 3.8079 0.1307 5.5214 24 1 5.9060 -0.5359 4.5044 25 1 4.8588 1.5556 3.8644 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7517 -0.1582 -2.1369 30 1 1.6055 -1.7197 -1.2952 31 1 3.9823 -0.4627 -0.4316 32 1 5.7959 -0.3453 -0.3819 33 1 8.2764 -0.5284 -0.2740 34 1 9.4661 -1.8124 -1.9877 35 1 5.0765 -2.1506 -4.7778 36 1 6.2478 -3.4910 -4.7783 37 1 4.8118 -3.5642 -3.7289 38 1 2.4603 -2.7357 1.0513 39 1 1.5352 -2.2635 2.4968 40 1 0.7346 -2.3239 0.9082 41 1 4.4407 -2.5232 3.3152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485351039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:19 Heat of formation + Delta-G solvation = -4.934552 kcal Electronic energy + Delta-G solvation = -24368.425536 eV Core-core repulsion = 20864.203776 eV Total energy + Delta-G solvation = -3504.221761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39976 -39.26226 -37.00689 -36.51110 -34.71667 -33.72026 -32.31743 -30.26926 -29.29542 -27.48978 -26.17747 -26.06753 -24.29490 -23.13204 -22.45118 -20.59835 -19.54285 -17.74893 -17.26577 -17.05137 -16.80621 -16.14959 -15.58368 -15.42983 -15.22406 -14.61976 -14.53221 -14.02411 -13.81197 -13.08360 -12.91246 -12.86195 -12.57516 -12.37293 -12.36250 -12.25526 -11.96116 -11.74662 -11.57525 -11.16526 -10.94327 -10.79393 -10.49750 -10.41845 -10.11490 -10.04501 -9.99782 -9.91554 -9.57838 -8.73176 -8.67857 -7.94587 -6.92806 -5.87050 -3.38860 0.51667 1.74394 2.55630 3.02761 3.25629 3.33146 3.35133 3.41565 3.76306 4.32869 4.65294 4.66981 4.90812 5.21461 5.24185 5.26501 5.31711 5.46120 5.57646 5.58610 5.80320 5.89563 5.90788 5.95019 6.00684 6.04618 6.17398 6.25467 6.27597 6.43260 6.57095 6.68297 6.72964 6.84914 7.07427 7.31542 7.62997 7.69635 7.80453 8.04515 8.23837 8.35699 9.08066 9.69458 10.19810 11.14878 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.005768 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.978882 B = 4852.950555 C = 6309.482822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.071 0.929 4 C 0.106 3.894 5 N -0.678 5.678 6 C 0.549 3.451 7 O -0.544 6.544 8 C 0.122 3.878 9 C -0.174 4.174 10 C -0.019 4.019 11 C -0.228 4.228 12 C 0.513 3.487 13 O -0.559 6.559 14 N -0.476 5.476 15 C 0.067 3.933 16 N -0.595 5.595 17 C 0.163 3.837 18 C -0.265 4.265 19 H 0.068 0.932 20 C 0.009 3.991 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.418 0.582 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.030 0.970 39 H 0.042 0.958 40 H -0.003 1.003 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.319 3.622 -6.766 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.019 4.019 5 N -0.329 5.329 6 C 0.333 3.667 7 O -0.424 6.424 8 C 0.011 3.989 9 C -0.199 4.199 10 C -0.041 4.041 11 C -0.250 4.250 12 C 0.315 3.685 13 O -0.443 6.443 14 N -0.188 5.188 15 C -0.074 4.074 16 N -0.319 5.319 17 C 0.019 3.981 18 C -0.395 4.395 19 H 0.086 0.914 20 C -0.190 4.190 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.258 0.742 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.305 2.740 -7.890 8.454 hybrid contribution 0.725 0.492 1.440 1.685 sum 2.030 3.232 -6.451 7.495 Atomic orbital electron populations 1.22170 0.97273 1.01564 1.00791 1.20671 0.92782 0.95937 0.85766 0.91119 1.22103 0.78639 1.01589 0.99606 1.45739 1.08703 1.56282 1.22138 1.17786 0.85430 0.79767 0.83736 1.90769 1.69540 1.48620 1.33487 1.20226 0.93154 0.94750 0.90735 1.21081 0.94942 1.04607 0.99245 1.21450 0.93660 0.92763 0.96239 1.22327 1.01547 1.04014 0.97094 1.17298 0.80353 0.83168 0.87715 1.90901 1.67225 1.44634 1.41500 1.45353 1.08292 1.41742 1.23384 1.22265 0.96240 0.99187 0.89692 1.43945 1.58134 1.09712 1.20070 1.20788 0.93966 0.84389 0.98967 1.19222 1.15005 0.91421 1.13844 0.91426 1.25088 0.97865 0.95922 1.00175 1.70063 1.38617 1.06176 1.39581 0.86326 0.79363 0.78854 0.82388 1.21519 1.21623 1.20426 0.92884 0.92307 0.93496 0.92218 0.91817 0.74223 0.82658 0.83962 0.83161 0.89768 0.89263 0.89501 0.95167 0.93886 0.98450 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.18 37.16 0.34 -2.01 16 2 C 0.16 2.68 2.87 -67.93 -0.19 2.48 16 3 H 0.07 1.18 7.88 -51.92 -0.41 0.77 16 4 C 0.11 1.74 4.97 -4.04 -0.02 1.72 16 5 N -0.68 -11.37 5.33 -61.25 -0.33 -11.70 16 6 C 0.55 9.28 7.69 -12.31 -0.09 9.19 16 7 O -0.54 -9.94 13.22 5.33 0.07 -9.87 16 8 C 0.12 1.92 6.63 -82.33 -0.55 1.38 16 9 C -0.17 -2.45 9.49 -39.47 -0.37 -2.83 16 10 C -0.02 -0.24 10.08 -39.53 -0.40 -0.64 16 11 C -0.23 -3.11 10.00 -39.20 -0.39 -3.50 16 12 C 0.51 8.56 7.43 -15.16 -0.11 8.45 16 13 O -0.56 -10.77 16.39 4.95 0.08 -10.69 16 14 N -0.48 -7.66 3.02 -122.80 -0.37 -8.03 16 15 C 0.07 1.00 8.93 59.85 0.53 1.53 16 16 N -0.60 -12.56 2.29 -173.49 -0.40 -12.96 16 17 C 0.16 3.62 8.08 59.84 0.48 4.10 16 18 C -0.27 -6.17 9.32 -15.06 -0.14 -6.32 16 19 H 0.07 1.55 7.81 -52.48 -0.41 1.14 16 20 C 0.01 0.22 5.22 -17.43 -0.09 0.12 16 21 N -0.90 -23.08 10.48 55.49 0.58 -22.50 16 22 Si 0.90 19.44 29.56 -169.99 -5.02 14.42 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H 0.05 0.81 6.67 -51.93 -0.35 0.46 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 31 H 0.42 7.29 5.90 -40.82 -0.24 7.05 16 32 H 0.16 2.13 6.34 -52.49 -0.33 1.80 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.08 1.21 7.36 -51.93 -0.38 0.82 16 36 H 0.09 1.29 6.88 -51.93 -0.36 0.93 16 37 H 0.09 1.32 7.09 -51.93 -0.37 0.95 16 38 H 0.03 0.74 7.34 -51.93 -0.38 0.36 16 39 H 0.04 1.05 7.28 -51.93 -0.38 0.68 16 40 H 0.00 -0.06 6.44 -51.93 -0.33 -0.39 16 41 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -28.40 335.16 -6.93 -35.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.60 Total: 7.29 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -1.00 Total: 13.67 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.51 Total: -55.19 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.15 Total: -20.56 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.40 -6.93 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485351039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.395 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds