Wall clock time and date at job start Tue Mar 31 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46831 * 2 1 4 4 C 1.52998 * 109.47031 * 240.00203 * 2 1 3 5 5 N 1.46499 * 109.46833 * 184.99859 * 4 2 1 6 6 C 1.34777 * 119.99997 * 180.02562 * 5 4 2 7 7 O 1.21541 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.47877 * 120.00243 * 179.97438 * 6 5 4 9 9 C 1.36302 * 119.75824 * 353.84404 * 8 6 5 10 10 C 1.40400 * 119.90807 * 179.75609 * 9 8 6 11 11 C 1.36112 * 119.41882 * 0.49158 * 10 9 8 12 12 C 1.41247 * 119.50564 * 359.75681 * 11 10 9 13 13 O 1.21965 * 119.95433 * 180.02562 * 12 11 10 14 14 N 1.34674 * 120.08801 * 0.02562 * 12 11 10 15 15 C 1.46500 * 119.70100 * 179.97438 * 14 12 11 16 16 N 1.46500 * 109.46908 * 120.00058 * 2 1 3 17 17 C 1.46490 * 119.99910 * 60.00489 * 16 2 1 18 18 C 1.36932 * 119.99625 * 239.99751 * 16 2 1 19 19 H 1.08003 * 120.00801 * 24.71226 * 18 16 2 20 20 C 1.38820 * 120.00060 * 204.70707 * 18 16 2 21 21 N 1.31623 * 119.99526 * 6.61790 * 20 18 16 22 22 Si 1.86801 * 120.00239 * 186.61671 * 20 18 16 23 23 H 1.48501 * 109.47167 * 90.00069 * 22 20 18 24 24 H 1.48501 * 109.46789 * 210.00088 * 22 20 18 25 25 H 1.48500 * 109.47206 * 329.99853 * 22 20 18 26 26 H 1.08995 * 109.46896 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46919 * 300.00115 * 1 2 3 28 28 H 1.09001 * 109.46852 * 59.99678 * 1 2 3 29 29 H 1.09001 * 109.46884 * 65.00239 * 4 2 1 30 30 H 1.08991 * 109.47518 * 304.99821 * 4 2 1 31 31 H 0.96997 * 120.00139 * 0.02562 * 5 4 2 32 32 H 1.07998 * 120.04406 * 359.97438 * 9 8 6 33 33 H 1.08001 * 120.29646 * 180.22608 * 10 9 8 34 34 H 1.07995 * 120.24594 * 179.73623 * 11 10 9 35 35 H 1.09000 * 109.47601 * 244.50370 * 15 14 12 36 36 H 1.09005 * 109.47079 * 4.51065 * 15 14 12 37 37 H 1.09004 * 109.46302 * 124.50605 * 15 14 12 38 38 H 1.09000 * 109.47560 * 95.09178 * 17 16 2 39 39 H 1.09004 * 109.47398 * 215.08698 * 17 16 2 40 40 H 1.08996 * 109.47512 * 335.08592 * 17 16 2 41 41 H 0.97000 * 119.99472 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1731 -1.4281 -2.1912 7 8 3.5688 -1.8832 -3.1424 8 6 5.6469 -1.5337 -2.1322 9 6 6.3302 -0.9126 -1.1296 10 6 7.7291 -1.0150 -1.0677 11 6 8.3900 -1.7285 -2.0200 12 6 7.6578 -2.3578 -3.0510 13 8 8.2416 -2.9995 -3.9082 14 7 6.3159 -2.2502 -3.0887 15 6 5.5649 -2.9059 -4.1621 16 7 2.0183 -0.6906 1.1962 17 6 1.6645 -2.0931 1.4279 18 6 2.8056 -0.0251 2.0975 19 1 2.7519 1.0511 2.1703 20 6 3.6728 -0.7338 2.9178 21 7 3.8350 -2.0280 2.7418 22 14 4.6094 0.1495 4.2714 23 1 3.8079 0.1307 5.5214 24 1 5.9060 -0.5359 4.5044 25 1 4.8588 1.5556 3.8644 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.7517 -0.1582 -2.1369 30 1 1.6055 -1.7197 -1.2952 31 1 3.9823 -0.4627 -0.4316 32 1 5.7959 -0.3453 -0.3819 33 1 8.2764 -0.5284 -0.2740 34 1 9.4661 -1.8124 -1.9877 35 1 5.0765 -2.1506 -4.7778 36 1 6.2478 -3.4910 -4.7783 37 1 4.8118 -3.5642 -3.7289 38 1 2.4603 -2.7357 1.0513 39 1 1.5352 -2.2635 2.4968 40 1 0.7346 -2.3239 0.9082 41 1 4.4407 -2.5232 3.3152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485351039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:18 Heat of formation + Delta-G solvation = -22.085081 kcal Electronic energy + Delta-G solvation = -24369.169239 eV Core-core repulsion = 20864.203776 eV Total energy + Delta-G solvation = -3504.965464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.62763 -40.59887 -38.48625 -37.82227 -36.01129 -35.10794 -33.86394 -31.63479 -30.78984 -28.68028 -27.95003 -27.35627 -25.54076 -24.77754 -23.63790 -21.90274 -21.01358 -19.05848 -18.75701 -18.49469 -17.98420 -17.42880 -17.03636 -16.87536 -16.57565 -16.10491 -15.60836 -15.56826 -15.20118 -14.63188 -14.40418 -14.27265 -13.81576 -13.79008 -13.60776 -13.48328 -13.16017 -13.12874 -12.81304 -12.76448 -12.58192 -12.41207 -12.21051 -12.03293 -11.69328 -11.43910 -11.42603 -11.15952 -10.88799 -10.55243 -10.05015 -9.16667 -8.69777 -7.70312 -5.22574 -0.64501 0.56924 1.33978 1.54348 1.59896 1.65072 1.73607 2.14787 2.57336 2.58237 3.39366 3.43634 3.53245 3.71071 3.84628 4.07192 4.11855 4.22384 4.37066 4.42309 4.43027 4.65510 4.69609 4.75217 4.83080 4.86466 4.90046 4.95313 5.13457 5.15685 5.29784 5.33576 5.37528 5.42054 5.60108 5.77363 5.82991 5.86434 6.42534 6.46265 6.79390 7.01664 7.25375 7.95391 8.41884 9.30017 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.005768 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.978882 B = 4852.950555 C = 6309.482822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 H 0.080 0.920 4 C 0.112 3.888 5 N -0.678 5.678 6 C 0.549 3.451 7 O -0.562 6.562 8 C 0.099 3.901 9 C -0.160 4.160 10 C -0.008 4.008 11 C -0.226 4.226 12 C 0.498 3.502 13 O -0.596 6.596 14 N -0.480 5.480 15 C 0.072 3.928 16 N -0.603 5.603 17 C 0.182 3.818 18 C -0.259 4.259 19 H 0.075 0.925 20 C -0.036 4.036 21 N -0.928 5.928 22 Si 0.954 3.046 23 H -0.302 1.302 24 H -0.298 1.298 25 H -0.263 1.263 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.416 0.584 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.002 0.998 39 H 0.012 0.988 40 H 0.019 0.981 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 5.527 -6.550 8.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.098 0.902 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.334 3.666 7 O -0.444 6.444 8 C -0.011 4.011 9 C -0.184 4.184 10 C -0.029 4.029 11 C -0.248 4.248 12 C 0.302 3.698 13 O -0.483 6.483 14 N -0.192 5.192 15 C -0.069 4.069 16 N -0.327 5.327 17 C 0.037 3.963 18 C -0.389 4.389 19 H 0.093 0.907 20 C -0.232 4.232 21 N -0.574 5.574 22 Si 0.784 3.216 23 H -0.230 1.230 24 H -0.225 1.225 25 H -0.188 1.188 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.255 0.745 32 H 0.179 0.821 33 H 0.200 0.800 34 H 0.191 0.809 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.021 0.979 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.430 4.695 -7.683 9.116 hybrid contribution 0.600 -0.046 1.379 1.504 sum 2.029 4.649 -6.304 8.091 Atomic orbital electron populations 1.22072 0.95207 1.01621 1.02074 1.20865 0.94160 0.95828 0.84257 0.90216 1.22042 0.78353 1.00909 0.99991 1.45752 1.08892 1.56277 1.21943 1.17944 0.85989 0.79281 0.83396 1.90754 1.70093 1.49369 1.34136 1.20184 0.92645 0.96450 0.91844 1.21346 0.95978 1.03007 0.98094 1.21804 0.92784 0.91816 0.96527 1.22546 1.02570 1.03435 0.96204 1.17841 0.80470 0.83269 0.88206 1.90876 1.67816 1.46523 1.43050 1.45394 1.08399 1.41774 1.23594 1.22200 0.95966 0.99132 0.89586 1.44065 1.57990 1.09242 1.21388 1.20429 0.93975 0.84940 0.96941 1.19498 1.14027 0.91751 1.13579 0.90733 1.25624 0.99125 0.96332 1.02102 1.70225 1.39508 1.07332 1.40350 0.85471 0.77659 0.78684 0.79748 1.22983 1.22481 1.18778 0.93428 0.92863 0.90387 0.90107 0.93318 0.74536 0.82074 0.80049 0.80914 0.89438 0.89258 0.90215 0.97923 0.96964 0.96214 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.18 71.98 0.66 -3.40 16 2 C 0.16 4.97 2.87 44.99 0.13 5.10 16 3 H 0.08 2.42 7.88 -2.38 -0.02 2.40 16 4 C 0.11 3.47 4.97 86.38 0.43 3.90 16 5 N -0.68 -22.00 5.33 -465.96 -2.48 -24.48 16 6 C 0.55 18.24 7.69 86.80 0.67 18.91 16 7 O -0.56 -20.38 13.22 -3.84 -0.05 -20.43 16 8 C 0.10 3.03 6.63 40.45 0.27 3.30 16 9 C -0.16 -4.19 9.49 22.34 0.21 -3.98 16 10 C -0.01 -0.18 10.08 22.30 0.22 0.05 16 11 C -0.23 -5.68 10.00 22.51 0.23 -5.46 16 12 C 0.50 16.37 7.43 85.00 0.63 17.00 16 13 O -0.60 -23.08 16.39 -5.20 -0.09 -23.17 16 14 N -0.48 -15.36 3.02 -660.58 -1.99 -17.36 16 15 C 0.07 2.18 8.93 127.77 1.14 3.32 16 16 N -0.60 -24.75 2.29 -702.78 -1.61 -26.36 16 17 C 0.18 8.08 8.08 127.77 1.03 9.11 16 18 C -0.26 -11.66 9.32 84.04 0.78 -10.88 16 19 H 0.07 3.24 7.81 -2.91 -0.02 3.22 16 20 C -0.04 -1.70 5.22 84.86 0.44 -1.25 16 21 N -0.93 -47.91 10.48 21.65 0.23 -47.68 16 22 Si 0.95 39.28 29.56 68.60 2.03 41.31 16 23 H -0.30 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 H 0.05 1.33 6.67 -2.39 -0.02 1.32 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.66 7.84 -2.39 -0.02 1.65 16 31 H 0.42 13.94 5.90 -92.71 -0.55 13.40 16 32 H 0.16 4.07 6.34 -2.91 -0.02 4.05 16 33 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.09 2.54 7.36 -2.39 -0.02 2.52 16 36 H 0.09 2.66 6.88 -2.38 -0.02 2.64 16 37 H 0.08 2.49 7.09 -2.38 -0.02 2.47 16 38 H 0.00 0.12 7.34 -2.39 -0.02 0.11 16 39 H 0.01 0.58 7.28 -2.38 -0.02 0.57 16 40 H 0.02 0.76 6.44 -2.39 -0.02 0.75 16 41 H 0.24 12.67 8.31 -92.71 -0.77 11.90 16 Total: -1.00 -61.08 335.16 3.39 -57.70 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.50 Total: 24.75 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 6.85 Total: 35.73 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.86 Total: -115.89 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -0.14 Total: -43.59 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -61.08 3.39 -57.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485351039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.611 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds