Wall clock time and date at job start Tue Mar 31 2020 03:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36602 * 126.57822 * 2 1 4 4 C 1.47518 * 125.77210 * 0.04443 * 3 2 1 5 5 O 1.21593 * 119.99923 * 359.71390 * 4 3 2 6 6 N 1.34774 * 120.00161 * 179.71342 * 4 3 2 7 7 C 1.46501 * 120.00445 * 180.02562 * 6 4 3 8 8 H 1.09008 * 112.90283 * 336.25350 * 7 6 4 9 9 C 1.53779 * 113.61329 * 107.49876 * 7 6 4 10 10 C 1.53781 * 87.08085 * 89.12048 * 9 7 6 11 11 H 1.09002 * 113.68898 * 270.87721 * 10 9 7 12 12 C 1.52996 * 113.61817 * 139.97548 * 10 9 7 13 13 N 1.46504 * 109.46681 * 87.50246 * 12 10 9 14 14 C 1.36943 * 119.99781 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27904 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99811 * 18 16 14 22 22 C 1.53778 * 113.61567 * 205.00126 * 7 6 4 23 23 N 1.34397 * 108.45282 * 179.77966 * 3 2 1 24 24 N 1.28761 * 109.52930 * 0.22973 * 23 3 2 25 25 N 1.34816 * 126.58132 * 180.17551 * 2 1 3 26 26 C 1.46497 * 126.59312 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47814 * 89.99681 * 1 2 3 28 28 H 1.09005 * 109.47003 * 210.00112 * 1 2 3 29 29 H 1.09003 * 109.47132 * 329.99076 * 1 2 3 30 30 H 0.96996 * 119.99848 * 0.02562 * 6 4 3 31 31 H 1.08994 * 113.61759 * 334.56992 * 9 7 6 32 32 H 1.09003 * 113.61269 * 203.66919 * 9 7 6 33 33 H 1.09006 * 109.47179 * 327.50862 * 12 10 9 34 34 H 1.08997 * 109.47540 * 207.50325 * 12 10 9 35 35 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 36 36 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 37 37 H 1.09002 * 113.60895 * 156.33347 * 22 7 6 38 38 H 1.08997 * 113.61234 * 25.43260 * 22 7 6 39 39 H 1.09006 * 109.46872 * 270.26961 * 26 25 2 40 40 H 1.08999 * 109.47590 * 30.26971 * 26 25 2 41 41 H 1.08996 * 109.47530 * 150.27526 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6860 2.7628 -0.0035 6 7 2.7816 3.4988 0.0067 7 6 2.3375 4.8948 0.0082 8 1 1.3346 5.0214 -0.3997 9 6 2.5494 5.6072 1.3544 10 6 3.9452 5.9962 0.8394 11 1 4.7163 5.2595 1.0650 12 6 4.3594 7.4220 1.2088 13 7 5.0011 7.4183 2.5258 14 6 5.4575 8.5900 3.0683 15 1 5.3447 9.5166 2.5250 16 6 6.0706 8.5857 4.3136 17 7 6.2085 7.4564 4.9754 18 14 6.7001 10.1827 5.0502 19 1 5.6248 10.8131 5.8576 20 1 7.8704 9.8996 5.9193 21 1 7.1053 11.1052 3.9593 22 6 3.3699 5.8703 -0.5812 23 7 3.5983 0.6789 0.0049 24 7 3.6299 -0.6083 0.0031 25 7 2.3104 -1.0826 -0.0033 26 6 1.8864 -2.4848 -0.0081 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 3.7292 3.2913 0.0098 31 1 2.5721 4.9299 2.2080 32 1 1.8869 6.4594 1.5065 33 1 3.4769 8.0611 1.2364 34 1 5.0596 7.8013 0.4645 35 1 5.1027 6.5861 3.0136 36 1 6.6367 7.4535 5.8458 37 1 2.9317 6.7944 -0.9583 38 1 4.0549 5.4053 -1.2901 39 1 1.7762 -2.8346 1.0184 40 1 0.9319 -2.5741 -0.5268 41 1 2.6356 -3.0893 -0.5194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485678301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:48 Heat of formation + Delta-G solvation = 89.358620 kcal Electronic energy + Delta-G solvation = -22737.718785 eV Core-core repulsion = 19269.878634 eV Total energy + Delta-G solvation = -3467.840151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51538 -39.98179 -38.16264 -35.29516 -34.45491 -33.03633 -32.58394 -30.79574 -28.56356 -27.81489 -26.68684 -25.42312 -24.07296 -23.06089 -21.65294 -21.20864 -20.67790 -18.95982 -18.20037 -16.98027 -16.72714 -16.17065 -15.95933 -14.92347 -14.88651 -14.58488 -14.48684 -14.02584 -13.91248 -13.66200 -13.57055 -13.40118 -13.24653 -12.93489 -12.70227 -12.28677 -12.19621 -12.05548 -11.58704 -11.41774 -10.97844 -10.78555 -10.52163 -10.41703 -10.28257 -10.09217 -10.03298 -9.75689 -9.54570 -9.42559 -8.91692 -8.77714 -6.83295 -5.69461 -2.97493 0.83808 1.51968 1.71304 3.06782 3.17963 3.48107 3.52791 3.54797 3.91311 3.99670 4.26890 4.47895 4.50577 4.63913 4.75604 4.77601 4.89931 4.96166 5.08318 5.20035 5.22340 5.31689 5.43589 5.61542 5.64598 5.82660 5.95687 6.01360 6.07305 6.10333 6.19884 6.32388 6.38938 6.50370 6.69385 6.86861 7.02001 7.42471 7.74802 7.76185 8.13815 8.49789 9.60556 10.20683 10.55050 11.53571 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.002715 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.259117 B =10310.409752 C =10886.269293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.123 3.877 3 C -0.105 4.105 4 C 0.609 3.391 5 O -0.540 6.540 6 N -0.692 5.692 7 C 0.116 3.884 8 H 0.102 0.898 9 C -0.138 4.138 10 C -0.114 4.114 11 H 0.089 0.911 12 C 0.163 3.837 13 N -0.732 5.732 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.138 4.138 23 N -0.200 5.200 24 N -0.067 5.067 25 N -0.367 5.367 26 C 0.087 3.913 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.410 0.590 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 -20.532 -13.929 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.245 4.245 4 C 0.393 3.607 5 O -0.417 6.417 6 N -0.342 5.342 7 C 0.011 3.989 8 H 0.120 0.880 9 C -0.177 4.177 10 C -0.133 4.133 11 H 0.107 0.893 12 C 0.035 3.965 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.212 4.212 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.177 4.177 23 N -0.073 5.073 24 N -0.046 5.046 25 N -0.153 5.153 26 C -0.054 4.054 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.245 0.755 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.614 -20.599 -13.914 27.876 hybrid contribution 0.047 0.449 0.752 0.877 sum -12.567 -20.150 -13.162 27.151 Atomic orbital electron populations 1.20727 0.84579 1.05548 1.04611 1.21930 0.96258 0.86321 0.96969 1.21220 0.89058 0.95460 1.18761 1.16659 0.85564 0.82416 0.76026 1.90751 1.15883 1.83579 1.51448 1.45463 1.10167 1.05227 1.73325 1.21984 0.99098 0.79295 0.98505 0.88035 1.23418 0.97594 1.00192 0.96494 1.22774 0.96584 0.99385 0.94571 0.89295 1.20638 0.95069 0.92223 0.88562 1.42364 1.70470 1.08108 1.16668 1.19250 1.30424 0.87431 0.99756 0.91251 1.24741 1.01950 0.96891 0.97611 1.69662 1.49421 1.24521 1.14688 0.86194 0.78164 0.82951 0.78927 1.21785 1.21826 1.20806 1.23317 0.97897 0.99078 0.97369 1.74620 1.19024 1.04171 1.09479 1.82021 0.95879 1.03420 1.23318 1.50295 1.06517 1.07785 1.50659 1.22166 1.02423 0.76049 1.04772 0.89026 0.90653 0.86804 0.75453 0.91269 0.89012 0.96216 0.96408 0.78300 0.93591 0.88616 0.91140 0.89218 0.88526 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 9.38 36.01 0.34 -0.30 16 2 C 0.12 1.22 7.02 -81.87 -0.57 0.64 16 3 C -0.11 -1.35 6.99 -83.55 -0.58 -1.94 16 4 C 0.61 8.44 7.82 -12.48 -0.10 8.34 16 5 O -0.54 -8.18 14.32 5.28 0.08 -8.10 16 6 N -0.69 -9.18 5.26 -54.06 -0.28 -9.46 16 7 C 0.12 1.54 4.32 -67.12 -0.29 1.25 16 8 H 0.10 1.34 7.47 -51.92 -0.39 0.96 16 9 C -0.14 -2.14 7.43 -25.92 -0.19 -2.33 16 10 C -0.11 -1.87 3.63 -89.81 -0.33 -2.19 16 11 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 12 C 0.16 3.33 6.10 -4.04 -0.02 3.31 16 13 N -0.73 -19.16 5.60 -59.91 -0.34 -19.49 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 17 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 18 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.14 -1.76 7.39 -25.92 -0.19 -1.95 16 23 N -0.20 -2.76 12.04 32.85 0.40 -2.37 16 24 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 25 N -0.37 -3.29 4.03 -63.59 -0.26 -3.54 16 26 C 0.09 0.29 11.17 59.85 0.67 0.96 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.28 7.84 -51.93 -0.41 -0.13 16 29 H 0.11 0.98 6.43 -51.93 -0.33 0.65 16 30 H 0.41 5.23 8.39 -40.82 -0.34 4.89 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.41 7.90 -51.93 -0.41 1.00 16 33 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 36 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 0.08 7.78 -51.93 -0.40 -0.32 16 41 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -35.61 348.25 -6.08 -41.68 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.93 Total: 8.22 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.52 Total: -1.78 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 1.08 Total: -63.20 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.61 -6.08 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485678301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.042 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds