Wall clock time and date at job start Tue Mar 31 2020 03:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36602 * 126.57822 * 2 1 4 4 C 1.47518 * 125.77210 * 0.04443 * 3 2 1 5 5 O 1.21593 * 119.99923 * 359.71390 * 4 3 2 6 6 N 1.34774 * 120.00161 * 179.71342 * 4 3 2 7 7 C 1.46501 * 120.00445 * 180.02562 * 6 4 3 8 8 H 1.09008 * 112.90283 * 336.25350 * 7 6 4 9 9 C 1.53779 * 113.61329 * 107.49876 * 7 6 4 10 10 C 1.53781 * 87.08085 * 89.12048 * 9 7 6 11 11 H 1.09002 * 113.68898 * 270.87721 * 10 9 7 12 12 C 1.52996 * 113.61817 * 139.97548 * 10 9 7 13 13 N 1.46504 * 109.46681 * 87.50246 * 12 10 9 14 14 C 1.36943 * 119.99781 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99788 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99622 * 180.27904 * 14 13 12 17 17 N 1.31614 * 120.00467 * 359.72375 * 16 14 13 18 18 Si 1.86801 * 119.99700 * 179.72266 * 16 14 13 19 19 H 1.48501 * 109.46896 * 89.99850 * 18 16 14 20 20 H 1.48499 * 109.47039 * 210.00011 * 18 16 14 21 21 H 1.48501 * 109.47275 * 329.99811 * 18 16 14 22 22 C 1.53778 * 113.61567 * 205.00126 * 7 6 4 23 23 N 1.34397 * 108.45282 * 179.77966 * 3 2 1 24 24 N 1.28761 * 109.52930 * 0.22973 * 23 3 2 25 25 N 1.34816 * 126.58132 * 180.17551 * 2 1 3 26 26 C 1.46497 * 126.59312 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47814 * 89.99681 * 1 2 3 28 28 H 1.09005 * 109.47003 * 210.00112 * 1 2 3 29 29 H 1.09003 * 109.47132 * 329.99076 * 1 2 3 30 30 H 0.96996 * 119.99848 * 0.02562 * 6 4 3 31 31 H 1.08994 * 113.61759 * 334.56992 * 9 7 6 32 32 H 1.09003 * 113.61269 * 203.66919 * 9 7 6 33 33 H 1.09006 * 109.47179 * 327.50862 * 12 10 9 34 34 H 1.08997 * 109.47540 * 207.50325 * 12 10 9 35 35 H 0.97000 * 120.00410 * 0.02562 * 13 12 10 36 36 H 0.96995 * 120.00147 * 180.02562 * 17 16 14 37 37 H 1.09002 * 113.60895 * 156.33347 * 22 7 6 38 38 H 1.08997 * 113.61234 * 25.43260 * 22 7 6 39 39 H 1.09006 * 109.46872 * 270.26961 * 26 25 2 40 40 H 1.08999 * 109.47590 * 30.26971 * 26 25 2 41 41 H 1.08996 * 109.47530 * 150.27526 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6860 2.7628 -0.0035 6 7 2.7816 3.4988 0.0067 7 6 2.3375 4.8948 0.0082 8 1 1.3346 5.0214 -0.3997 9 6 2.5494 5.6072 1.3544 10 6 3.9452 5.9962 0.8394 11 1 4.7163 5.2595 1.0650 12 6 4.3594 7.4220 1.2088 13 7 5.0011 7.4183 2.5258 14 6 5.4575 8.5900 3.0683 15 1 5.3447 9.5166 2.5250 16 6 6.0706 8.5857 4.3136 17 7 6.2085 7.4564 4.9754 18 14 6.7001 10.1827 5.0502 19 1 5.6248 10.8131 5.8576 20 1 7.8704 9.8996 5.9193 21 1 7.1053 11.1052 3.9593 22 6 3.3699 5.8703 -0.5812 23 7 3.5983 0.6789 0.0049 24 7 3.6299 -0.6083 0.0031 25 7 2.3104 -1.0826 -0.0033 26 6 1.8864 -2.4848 -0.0081 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 3.7292 3.2913 0.0098 31 1 2.5721 4.9299 2.2080 32 1 1.8869 6.4594 1.5065 33 1 3.4769 8.0611 1.2364 34 1 5.0596 7.8013 0.4645 35 1 5.1027 6.5861 3.0136 36 1 6.6367 7.4535 5.8458 37 1 2.9317 6.7944 -0.9583 38 1 4.0549 5.4053 -1.2901 39 1 1.7762 -2.8346 1.0184 40 1 0.9319 -2.5741 -0.5268 41 1 2.6356 -3.0893 -0.5194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485678301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:47 Heat of formation + Delta-G solvation = 62.376085 kcal Electronic energy + Delta-G solvation = -22738.888835 eV Core-core repulsion = 19269.878634 eV Total energy + Delta-G solvation = -3469.010201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.32901 -41.11099 -39.34135 -36.35529 -35.96063 -34.35841 -33.32868 -32.73326 -29.38832 -28.34142 -28.28401 -26.60777 -25.49423 -24.51844 -22.95731 -22.20802 -21.57800 -20.24816 -19.11138 -19.01524 -17.46632 -17.11179 -16.91296 -16.66254 -15.94679 -15.93802 -15.56570 -15.25548 -15.14321 -14.96838 -14.46857 -14.22622 -14.11154 -13.96213 -13.71358 -13.35184 -13.30265 -13.10246 -12.98655 -12.90636 -12.68336 -12.20707 -12.16903 -11.91661 -11.73966 -11.35078 -11.18914 -11.13290 -11.12025 -10.84722 -10.32878 -9.96601 -8.97188 -7.94024 -5.22708 0.08652 0.55357 1.11957 1.46763 1.49262 1.57688 2.06952 2.17621 2.56836 3.14686 3.38790 3.42165 3.59856 3.61312 3.62756 3.72897 3.95581 3.97623 4.32711 4.34396 4.39246 4.56735 4.61426 4.65401 4.66846 4.76770 4.82125 4.87668 4.89274 4.94664 5.00072 5.08524 5.17973 5.29311 5.36828 5.49058 5.51162 5.67655 6.28477 6.39174 6.85747 7.09815 7.33946 8.12426 8.34598 9.29851 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.002715 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.259117 B =10310.409752 C =10886.269293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.133 3.867 3 C -0.136 4.136 4 C 0.608 3.392 5 O -0.557 6.557 6 N -0.693 5.693 7 C 0.128 3.872 8 H 0.109 0.891 9 C -0.141 4.141 10 C -0.116 4.116 11 H 0.077 0.923 12 C 0.161 3.839 13 N -0.747 5.747 14 C -0.244 4.244 15 H 0.077 0.923 16 C -0.080 4.080 17 N -0.972 5.972 18 Si 0.976 3.024 19 H -0.286 1.286 20 H -0.296 1.296 21 H -0.268 1.268 22 C -0.117 4.117 23 N -0.227 5.227 24 N -0.095 5.095 25 N -0.354 5.354 26 C 0.071 3.929 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.411 0.589 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.372 0.628 36 H 0.250 0.750 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 -21.200 -15.274 29.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 C -0.276 4.276 4 C 0.393 3.607 5 O -0.435 6.435 6 N -0.342 5.342 7 C 0.023 3.977 8 H 0.127 0.873 9 C -0.179 4.179 10 C -0.135 4.135 11 H 0.095 0.905 12 C 0.035 3.965 13 N -0.389 5.389 14 C -0.376 4.376 15 H 0.095 0.905 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.804 3.196 19 H -0.213 1.213 20 H -0.222 1.222 21 H -0.193 1.193 22 C -0.155 4.155 23 N -0.100 5.100 24 N -0.075 5.075 25 N -0.139 5.139 26 C -0.067 4.067 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.247 0.753 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.986 -21.283 -15.306 29.713 hybrid contribution 0.392 0.548 1.139 1.323 sum -13.594 -20.735 -14.167 28.556 Atomic orbital electron populations 1.20845 0.82023 1.06314 1.05886 1.22398 0.97544 0.85692 0.95010 1.21307 0.89598 0.95720 1.21000 1.16847 0.85357 0.82996 0.75478 1.90730 1.16382 1.84003 1.52375 1.45496 1.10275 1.05243 1.73218 1.21855 0.99699 0.79370 0.96797 0.87321 1.23426 0.97183 1.00248 0.97065 1.22695 0.96604 0.96477 0.97675 0.90499 1.20832 0.94666 0.95011 0.86027 1.42620 1.70859 1.06918 1.18506 1.19690 1.29517 0.88516 0.99913 0.90536 1.25619 1.02970 1.00275 0.98359 1.69832 1.50802 1.26767 1.14919 0.85104 0.77217 0.79106 0.78134 1.21347 1.22217 1.19274 1.23247 0.97302 0.99707 0.95237 1.74575 1.19944 1.04971 1.10477 1.81902 0.98074 1.03070 1.24458 1.50638 1.05191 1.09463 1.48643 1.22732 1.04274 0.73112 1.06598 0.87275 0.87019 0.88823 0.75309 0.93343 0.88818 0.95667 0.96114 0.79698 0.94080 0.86763 0.89581 0.87492 0.85158 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.38 71.24 0.67 -0.32 16 2 C 0.13 2.45 7.02 41.72 0.29 2.74 16 3 C -0.14 -3.49 6.99 40.82 0.29 -3.21 16 4 C 0.61 16.88 7.82 86.69 0.68 17.56 16 5 O -0.56 -16.70 14.32 -4.01 -0.06 -16.76 16 6 N -0.69 -18.40 5.26 -443.22 -2.33 -20.73 16 7 C 0.13 3.29 4.32 45.52 0.20 3.49 16 8 H 0.11 2.72 7.47 -2.38 -0.02 2.70 16 9 C -0.14 -4.37 7.43 31.12 0.23 -4.13 16 10 C -0.12 -3.76 3.63 -10.27 -0.04 -3.80 16 11 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 12 C 0.16 6.55 6.10 86.38 0.53 7.07 16 13 N -0.75 -39.65 5.60 -343.44 -1.92 -41.58 16 14 C -0.24 -14.15 9.99 84.03 0.84 -13.31 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 16 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 17 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 18 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.12 -2.77 7.39 31.12 0.23 -2.54 16 23 N -0.23 -6.40 12.04 -50.00 -0.60 -7.01 16 24 N -0.10 -2.39 13.78 37.02 0.51 -1.88 16 25 N -0.35 -5.76 4.03 -355.10 -1.43 -7.19 16 26 C 0.07 0.27 11.17 127.77 1.43 1.70 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 0.37 7.84 -2.38 -0.02 0.35 16 29 H 0.09 1.49 6.43 -2.39 -0.02 1.47 16 30 H 0.41 10.70 8.39 -92.71 -0.78 9.92 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 2.85 7.90 -2.39 -0.02 2.84 16 33 H 0.03 1.01 7.84 -2.38 -0.02 1.00 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.37 21.17 7.67 -92.71 -0.71 20.46 16 36 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.11 2.35 8.10 -2.39 -0.02 2.33 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 40 H 0.13 -0.35 7.78 -2.39 -0.02 -0.37 16 41 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -78.61 348.25 1.85 -76.75 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.42 Total: 29.42 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 5.81 Total: 0.93 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -5.50 Total: -139.83 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.06 Total: -16.76 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -78.61 1.85 -76.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485678301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.130 kcal (2) G-P(sol) polarization free energy of solvation -78.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds