Wall clock time and date at job start Tue Mar 31 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47121 * 2 1 4 4 C 1.53005 * 109.47033 * 239.99836 * 2 1 3 5 5 N 1.46492 * 109.46899 * 185.00073 * 4 2 1 6 6 C 1.46496 * 120.00250 * 270.00171 * 5 4 2 7 7 C 1.34774 * 120.00078 * 90.00209 * 5 4 2 8 8 O 1.21546 * 119.99953 * 5.25655 * 7 5 4 9 9 C 1.47886 * 120.00405 * 185.25047 * 7 5 4 10 10 C 1.36300 * 119.75176 * 85.03759 * 9 7 5 11 11 C 1.40407 * 119.90247 * 179.97438 * 10 9 7 12 12 C 1.36104 * 119.41677 * 0.02562 * 11 10 9 13 13 C 1.41238 * 119.51069 * 359.97438 * 12 11 10 14 14 O 1.21963 * 119.95367 * 180.02562 * 13 12 11 15 15 N 1.34668 * 120.08954 * 0.27883 * 13 12 11 16 16 C 1.46500 * 119.70445 * 179.70446 * 15 13 12 17 17 N 1.46500 * 109.46987 * 120.00099 * 2 1 3 18 18 C 1.36939 * 120.00105 * 274.99745 * 17 2 1 19 19 H 1.07998 * 119.99544 * 0.02562 * 18 17 2 20 20 C 1.38805 * 119.99894 * 179.97438 * 18 17 2 21 21 N 1.31621 * 119.99923 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00346 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47404 * 89.99773 * 22 20 18 24 24 H 1.48508 * 109.47401 * 210.00112 * 22 20 18 25 25 H 1.48501 * 109.46929 * 329.99761 * 22 20 18 26 26 H 1.08997 * 109.46841 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46877 * 59.99489 * 1 2 3 28 28 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46777 * 65.00122 * 4 2 1 30 30 H 1.09003 * 109.47048 * 305.00448 * 4 2 1 31 31 H 1.09006 * 109.47182 * 274.94010 * 6 5 4 32 32 H 1.08998 * 109.47363 * 34.93516 * 6 5 4 33 33 H 1.09002 * 109.47670 * 154.93847 * 6 5 4 34 34 H 1.08002 * 120.04804 * 0.02940 * 10 9 7 35 35 H 1.08003 * 120.28778 * 179.97438 * 11 10 9 36 36 H 1.08004 * 120.24328 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.47083 * 359.97438 * 16 15 13 38 38 H 1.08998 * 109.47315 * 120.00017 * 16 15 13 39 39 H 1.09005 * 109.46877 * 239.99629 * 16 15 13 40 40 H 0.97004 * 120.00135 * 94.99782 * 17 2 1 41 41 H 0.97008 * 120.00044 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2339 -1.7612 7 6 4.0757 -1.8987 -0.6116 8 8 3.3876 -2.8226 -0.2239 9 6 5.5445 -1.9513 -0.4480 10 6 6.1256 -1.3668 0.6376 11 6 7.5198 -1.4154 0.7963 12 6 8.2777 -2.0480 -0.1406 13 6 7.6497 -2.6452 -1.2559 14 8 8.3210 -3.2146 -2.1001 15 7 6.3113 -2.5824 -1.3910 16 6 5.6694 -3.1992 -2.5545 17 7 2.0183 -0.6906 1.1962 18 6 2.1492 -0.0075 2.3758 19 1 1.8920 1.0403 2.4243 20 6 2.6113 -0.6621 3.5092 21 7 2.7375 -0.0054 4.6429 22 14 3.0555 -2.4745 3.4254 23 1 4.4883 -2.6168 3.0621 24 1 2.8153 -3.1049 4.7484 25 1 2.2159 -3.1429 2.3989 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -0.1584 -2.1369 30 1 1.6053 -1.7198 -1.2952 31 1 4.4698 0.0553 -2.8279 32 1 3.8481 1.1982 -1.6132 33 1 5.3060 0.2374 -1.2672 34 1 5.5143 -0.8679 1.3751 35 1 7.9868 -0.9540 1.6539 36 1 9.3513 -2.0929 -0.0321 37 1 6.4292 -3.6538 -3.1902 38 1 4.9695 -3.9649 -2.2199 39 1 5.1318 -2.4374 -3.1192 40 1 2.2490 -1.6318 1.1526 41 1 3.0602 -0.4629 5.4351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485919646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:01 Heat of formation + Delta-G solvation = -7.366994 kcal Electronic energy + Delta-G solvation = -24991.204115 eV Core-core repulsion = 21486.876875 eV Total energy + Delta-G solvation = -3504.327239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58188 -39.69696 -36.93131 -36.30369 -34.77132 -34.61792 -32.11695 -30.39712 -29.35796 -27.75420 -27.35326 -26.29222 -24.16353 -23.31433 -22.66955 -20.53792 -19.66183 -17.96739 -17.67917 -17.42191 -16.91159 -16.60379 -15.78919 -15.40034 -15.17642 -14.77911 -14.64174 -14.03020 -13.60882 -13.43198 -13.16973 -13.07824 -12.81778 -12.60884 -12.53749 -12.35243 -12.26167 -12.03120 -11.83971 -11.60053 -11.53774 -10.88412 -10.74509 -10.64833 -10.40784 -10.17436 -10.02034 -9.78450 -9.57473 -8.95884 -8.59651 -8.04946 -7.27386 -5.78679 -3.13391 0.59821 1.76119 2.09559 2.63690 3.05689 3.40820 3.49683 3.53556 3.59897 4.11760 4.52671 4.61323 4.85604 5.01240 5.05296 5.07163 5.09782 5.19582 5.22827 5.40150 5.45512 5.47354 5.50881 5.62380 5.65763 5.76902 5.84763 6.00836 6.04788 6.10164 6.22785 6.34538 6.37436 6.47215 6.65920 6.90973 6.92973 7.23074 7.91078 7.95985 8.03022 8.40684 9.22775 9.95341 10.16038 11.38994 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.006887 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.093870 B = 4064.764531 C = 5075.237706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.159 3.841 3 H 0.057 0.943 4 C 0.104 3.896 5 N -0.589 5.589 6 C 0.075 3.925 7 C 0.567 3.433 8 O -0.510 6.510 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.013 4.013 12 C -0.235 4.235 13 C 0.517 3.483 14 O -0.558 6.558 15 N -0.485 5.485 16 C 0.050 3.950 17 N -0.748 5.748 18 C -0.241 4.241 19 H 0.089 0.911 20 C 0.009 3.991 21 N -0.933 5.933 22 Si 0.868 3.132 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.268 1.268 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.372 0.628 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 0.370 -15.018 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.075 0.925 4 C -0.019 4.019 5 N -0.321 5.321 6 C -0.069 4.069 7 C 0.351 3.649 8 O -0.384 6.384 9 C 0.017 3.983 10 C -0.202 4.202 11 C -0.034 4.034 12 C -0.256 4.256 13 C 0.319 3.681 14 O -0.441 6.441 15 N -0.199 5.199 16 C -0.092 4.092 17 N -0.395 5.395 18 C -0.371 4.371 19 H 0.106 0.894 20 C -0.187 4.187 21 N -0.581 5.581 22 Si 0.698 3.302 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.194 1.194 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.208 0.792 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.166 -0.342 -15.235 16.091 hybrid contribution 0.217 -1.155 0.389 1.237 sum 5.383 -1.496 -14.846 15.863 Atomic orbital electron populations 1.22370 0.98214 1.01178 1.00717 1.20617 0.92445 0.95963 0.86106 0.92540 1.22077 0.77753 1.02821 0.99253 1.47581 1.07565 1.20368 1.56546 1.21875 0.95878 0.91329 0.97775 1.17815 0.85734 0.83086 0.78263 1.90852 1.62913 1.36816 1.47824 1.20294 0.91532 0.95192 0.91306 1.21087 0.95830 1.04767 0.98494 1.21491 0.92801 0.91972 0.97154 1.22291 1.01763 1.05481 0.96100 1.17286 0.80102 0.82362 0.88353 1.90903 1.61500 1.47082 1.44627 1.45413 1.08031 1.46036 1.20435 1.22235 0.99719 0.99442 0.87760 1.43016 1.79494 1.10209 1.06737 1.19040 1.36853 0.95377 0.85872 0.89365 1.24591 1.01526 0.97049 0.95530 1.69703 1.52693 1.35478 1.00207 0.86793 0.79296 0.87339 0.76807 1.20746 1.22056 1.19400 0.91960 0.94105 0.93382 0.89827 0.89714 0.92565 0.90061 0.90842 0.82110 0.83783 0.83048 0.87499 0.89977 0.90501 0.79198 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.49 37.16 0.35 -2.29 16 2 C 0.16 2.79 3.20 -67.93 -0.22 2.57 16 3 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 4 C 0.10 1.44 5.18 -4.04 -0.02 1.42 16 5 N -0.59 -8.27 2.77 -182.68 -0.51 -8.77 16 6 C 0.07 0.77 10.39 59.84 0.62 1.40 16 7 C 0.57 9.56 5.03 -12.31 -0.06 9.49 16 8 O -0.51 -10.43 14.73 5.33 0.08 -10.35 16 9 C 0.13 1.98 4.64 -82.33 -0.38 1.59 16 10 C -0.18 -2.77 9.19 -39.46 -0.36 -3.13 16 11 C -0.01 -0.16 10.08 -39.53 -0.40 -0.56 16 12 C -0.23 -3.08 10.00 -39.21 -0.39 -3.47 16 13 C 0.52 7.97 7.43 -15.17 -0.11 7.86 16 14 O -0.56 -9.90 16.39 4.95 0.08 -9.82 16 15 N -0.49 -7.02 3.02 -122.80 -0.37 -7.39 16 16 C 0.05 0.59 9.62 59.85 0.58 1.17 16 17 N -0.75 -17.13 4.33 -53.42 -0.23 -17.36 16 18 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.65 13.97 55.49 0.78 -27.88 16 22 Si 0.87 22.78 27.74 -169.99 -4.71 18.07 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.27 -7.13 6.52 56.52 0.37 -6.76 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.08 1.28 7.36 -51.93 -0.38 0.90 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.76 8.11 -51.93 -0.42 0.33 16 33 H 0.07 0.80 6.23 -51.93 -0.32 0.47 16 34 H 0.16 2.83 8.06 -52.49 -0.42 2.41 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 37 H 0.11 1.25 6.86 -51.93 -0.36 0.89 16 38 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 39 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.37 8.95 3.11 -40.82 -0.13 8.82 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -34.98 340.92 -6.24 -41.22 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.84 Total: 7.64 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -0.65 Total: 9.52 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.33 Total: -61.41 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.16 Total: -20.17 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.98 -6.24 -41.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485919646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.857 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds