Wall clock time and date at job start Tue Mar 31 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47121 * 2 1 4 4 C 1.53005 * 109.47033 * 239.99836 * 2 1 3 5 5 N 1.46492 * 109.46899 * 185.00073 * 4 2 1 6 6 C 1.46496 * 120.00250 * 270.00171 * 5 4 2 7 7 C 1.34774 * 120.00078 * 90.00209 * 5 4 2 8 8 O 1.21546 * 119.99953 * 5.25655 * 7 5 4 9 9 C 1.47886 * 120.00405 * 185.25047 * 7 5 4 10 10 C 1.36300 * 119.75176 * 85.03759 * 9 7 5 11 11 C 1.40407 * 119.90247 * 179.97438 * 10 9 7 12 12 C 1.36104 * 119.41677 * 0.02562 * 11 10 9 13 13 C 1.41238 * 119.51069 * 359.97438 * 12 11 10 14 14 O 1.21963 * 119.95367 * 180.02562 * 13 12 11 15 15 N 1.34668 * 120.08954 * 0.27883 * 13 12 11 16 16 C 1.46500 * 119.70445 * 179.70446 * 15 13 12 17 17 N 1.46500 * 109.46987 * 120.00099 * 2 1 3 18 18 C 1.36939 * 120.00105 * 274.99745 * 17 2 1 19 19 H 1.07998 * 119.99544 * 0.02562 * 18 17 2 20 20 C 1.38805 * 119.99894 * 179.97438 * 18 17 2 21 21 N 1.31621 * 119.99923 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00346 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47404 * 89.99773 * 22 20 18 24 24 H 1.48508 * 109.47401 * 210.00112 * 22 20 18 25 25 H 1.48501 * 109.46929 * 329.99761 * 22 20 18 26 26 H 1.08997 * 109.46841 * 300.00289 * 1 2 3 27 27 H 1.09003 * 109.46877 * 59.99489 * 1 2 3 28 28 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46777 * 65.00122 * 4 2 1 30 30 H 1.09003 * 109.47048 * 305.00448 * 4 2 1 31 31 H 1.09006 * 109.47182 * 274.94010 * 6 5 4 32 32 H 1.08998 * 109.47363 * 34.93516 * 6 5 4 33 33 H 1.09002 * 109.47670 * 154.93847 * 6 5 4 34 34 H 1.08002 * 120.04804 * 0.02940 * 10 9 7 35 35 H 1.08003 * 120.28778 * 179.97438 * 11 10 9 36 36 H 1.08004 * 120.24328 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.47083 * 359.97438 * 16 15 13 38 38 H 1.08998 * 109.47315 * 120.00017 * 16 15 13 39 39 H 1.09005 * 109.46877 * 239.99629 * 16 15 13 40 40 H 0.97004 * 120.00135 * 94.99782 * 17 2 1 41 41 H 0.97008 * 120.00044 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.3343 0.2339 -1.7612 7 6 4.0757 -1.8987 -0.6116 8 8 3.3876 -2.8226 -0.2239 9 6 5.5445 -1.9513 -0.4480 10 6 6.1256 -1.3668 0.6376 11 6 7.5198 -1.4154 0.7963 12 6 8.2777 -2.0480 -0.1406 13 6 7.6497 -2.6452 -1.2559 14 8 8.3210 -3.2146 -2.1001 15 7 6.3113 -2.5824 -1.3910 16 6 5.6694 -3.1992 -2.5545 17 7 2.0183 -0.6906 1.1962 18 6 2.1492 -0.0075 2.3758 19 1 1.8920 1.0403 2.4243 20 6 2.6113 -0.6621 3.5092 21 7 2.7375 -0.0054 4.6429 22 14 3.0555 -2.4745 3.4254 23 1 4.4883 -2.6168 3.0621 24 1 2.8153 -3.1049 4.7484 25 1 2.2159 -3.1429 2.3989 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -0.1584 -2.1369 30 1 1.6053 -1.7198 -1.2952 31 1 4.4698 0.0553 -2.8279 32 1 3.8481 1.1982 -1.6132 33 1 5.3060 0.2374 -1.2672 34 1 5.5143 -0.8679 1.3751 35 1 7.9868 -0.9540 1.6539 36 1 9.3513 -2.0929 -0.0321 37 1 6.4292 -3.6538 -3.1902 38 1 4.9695 -3.9649 -2.2199 39 1 5.1318 -2.4374 -3.1192 40 1 2.2490 -1.6318 1.1526 41 1 3.0602 -0.4629 5.4351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485919646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:01 Heat of formation + Delta-G solvation = -31.525355 kcal Electronic energy + Delta-G solvation = -24992.251700 eV Core-core repulsion = 21486.876875 eV Total energy + Delta-G solvation = -3505.374825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.73778 -40.93429 -38.21143 -37.67643 -36.19692 -35.72670 -34.03221 -31.73047 -31.01326 -28.77141 -28.38132 -27.43112 -25.58784 -25.00293 -23.78288 -21.93544 -20.99321 -19.76182 -18.94395 -18.57180 -18.11143 -17.78996 -16.95072 -16.84829 -16.50233 -16.36696 -15.73079 -15.60528 -15.03277 -14.60327 -14.55166 -14.41752 -14.23354 -13.80760 -13.71147 -13.57380 -13.48570 -13.22275 -13.14462 -13.00931 -12.80399 -12.69001 -12.36729 -12.22462 -11.84143 -11.78748 -11.64906 -11.21163 -11.04429 -10.97706 -9.78133 -9.26565 -9.21136 -8.02247 -5.30306 -0.50109 0.58840 0.90076 1.29462 1.35096 1.44717 1.48965 1.95445 2.41761 2.44755 3.01996 3.30348 3.45831 3.67483 3.85403 4.00399 4.08458 4.14077 4.15358 4.18543 4.31809 4.36314 4.53557 4.57106 4.61502 4.68907 4.80805 4.85639 4.88264 4.92885 5.03841 5.14819 5.23121 5.27527 5.34318 5.59508 5.78072 5.82382 6.08227 6.23749 6.74981 6.78148 7.12923 7.93465 8.09355 9.19340 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.006887 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.093870 B = 4064.764531 C = 5075.237706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.109 3.891 5 N -0.583 5.583 6 C 0.067 3.933 7 C 0.561 3.439 8 O -0.554 6.554 9 C 0.122 3.878 10 C -0.187 4.187 11 C -0.005 4.005 12 C -0.229 4.229 13 C 0.507 3.493 14 O -0.587 6.587 15 N -0.482 5.482 16 C 0.047 3.953 17 N -0.756 5.756 18 C -0.209 4.209 19 H 0.067 0.933 20 C -0.047 4.047 21 N -0.977 5.977 22 Si 0.919 3.081 23 H -0.273 1.273 24 H -0.303 1.303 25 H -0.275 1.275 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.368 0.632 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 0.951 -17.420 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.078 0.922 4 C -0.013 4.013 5 N -0.313 5.313 6 C -0.074 4.074 7 C 0.346 3.654 8 O -0.432 6.432 9 C 0.012 3.988 10 C -0.211 4.211 11 C -0.026 4.026 12 C -0.251 4.251 13 C 0.310 3.690 14 O -0.473 6.473 15 N -0.195 5.195 16 C -0.093 4.093 17 N -0.402 5.402 18 C -0.340 4.340 19 H 0.085 0.915 20 C -0.239 4.239 21 N -0.628 5.628 22 Si 0.750 3.250 23 H -0.199 1.199 24 H -0.230 1.230 25 H -0.201 1.201 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.154 0.846 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.203 0.797 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.512 0.280 -17.716 18.556 hybrid contribution 0.024 -1.218 1.021 1.590 sum 5.536 -0.938 -16.695 17.614 Atomic orbital electron populations 1.22236 0.96770 1.01071 1.01580 1.20996 0.93423 0.96104 0.85586 0.92176 1.22103 0.77490 1.02591 0.99134 1.47737 1.08090 1.20221 1.55230 1.22167 0.95115 0.90816 0.99350 1.18066 0.86034 0.83301 0.77973 1.90824 1.63848 1.38575 1.49991 1.20172 0.91122 0.95754 0.91779 1.21043 0.97027 1.05045 0.98019 1.21686 0.91412 0.91579 0.97955 1.22500 1.02886 1.04581 0.95104 1.17673 0.80272 0.82334 0.88706 1.90888 1.62056 1.48567 1.45762 1.45455 1.07899 1.45451 1.20670 1.22382 0.99712 1.00066 0.87151 1.43165 1.79715 1.10100 1.07186 1.19050 1.33412 0.94443 0.87124 0.91475 1.25061 1.03374 0.99751 0.95673 1.69816 1.55451 1.36682 1.00879 0.85962 0.79344 0.83999 0.75722 1.19911 1.23034 1.20077 0.94742 0.89582 0.93974 0.84570 0.90764 0.89292 0.88524 0.91527 0.84505 0.80827 0.80758 0.87375 0.90505 0.88081 0.79677 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 9.49 71.98 0.68 -3.98 16 2 C 0.15 4.83 3.20 44.99 0.14 4.97 16 3 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 4 C 0.11 2.66 5.18 86.38 0.45 3.11 16 5 N -0.58 -14.82 2.77 -850.16 -2.36 -17.18 16 6 C 0.07 1.15 10.39 127.77 1.33 2.48 16 7 C 0.56 18.20 5.03 86.80 0.44 18.64 16 8 O -0.55 -22.42 14.73 -3.86 -0.06 -22.47 16 9 C 0.12 3.67 4.64 40.45 0.19 3.85 16 10 C -0.19 -5.64 9.19 22.35 0.21 -5.44 16 11 C -0.01 -0.12 10.08 22.30 0.22 0.11 16 12 C -0.23 -5.53 10.00 22.51 0.23 -5.31 16 13 C 0.51 14.89 7.43 85.00 0.63 15.52 16 14 O -0.59 -20.18 16.39 -5.20 -0.09 -20.27 16 15 N -0.48 -13.27 3.02 -660.60 -1.99 -15.27 16 16 C 0.05 1.06 9.62 127.77 1.23 2.29 16 17 N -0.76 -34.14 4.33 -322.93 -1.40 -35.53 16 18 C -0.21 -11.40 10.41 84.03 0.87 -10.52 16 19 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 20 C -0.05 -2.73 5.50 84.86 0.47 -2.26 16 21 N -0.98 -61.36 13.97 21.65 0.30 -61.06 16 22 Si 0.92 48.20 27.74 68.60 1.90 50.11 16 23 H -0.27 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.30 -16.16 7.11 99.48 0.71 -15.45 16 25 H -0.27 -14.54 6.52 99.48 0.65 -13.89 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.14 1.96 8.07 -2.39 -0.02 1.94 16 30 H 0.07 2.05 7.36 -2.39 -0.02 2.03 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.07 1.28 6.23 -2.39 -0.01 1.26 16 34 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.11 2.40 6.86 -2.39 -0.02 2.38 16 38 H 0.08 1.81 8.07 -2.39 -0.02 1.79 16 39 H 0.10 1.72 8.09 -2.38 -0.02 1.70 16 40 H 0.37 17.55 3.11 -92.71 -0.29 17.26 16 41 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -78.04 340.92 4.08 -73.96 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.69 Total: 24.24 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 7.08 Total: 23.47 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -5.45 Total: -129.04 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -0.14 Total: -42.74 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.90 Total: 50.11 kcal Total: -78.04 4.08 -73.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485919646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.432 kcal (2) G-P(sol) polarization free energy of solvation -78.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds