Wall clock time and date at job start Tue Mar 31 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36946 * 119.99921 * 2 1 4 4 H 1.07999 * 119.99804 * 212.73935 * 3 2 1 5 5 C 1.38805 * 119.99982 * 32.74190 * 3 2 1 6 6 N 1.31627 * 120.00014 * 6.12001 * 5 3 2 7 7 Si 1.86796 * 120.00177 * 186.11806 * 5 3 2 8 8 H 1.48502 * 109.47423 * 89.99847 * 7 5 3 9 9 H 1.48501 * 109.47523 * 210.00026 * 7 5 3 10 10 H 1.48506 * 109.46937 * 330.00026 * 7 5 3 11 11 C 1.46495 * 120.00107 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47260 * 90.00221 * 11 2 1 13 13 H 1.08999 * 109.47487 * 60.00042 * 12 11 2 14 14 O 1.42900 * 109.46875 * 299.99617 * 12 11 2 15 15 C 1.53005 * 109.47193 * 180.02562 * 12 11 2 16 16 N 1.46503 * 109.46880 * 184.99690 * 15 12 11 17 17 C 1.46499 * 120.00273 * 269.99755 * 16 15 12 18 18 C 1.34779 * 119.99824 * 90.00124 * 16 15 12 19 19 O 1.21513 * 120.00160 * 2.35516 * 18 16 15 20 20 C 1.48167 * 119.99683 * 182.35868 * 18 16 15 21 21 C 1.39308 * 119.72241 * 172.40768 * 20 18 16 22 22 C 1.38593 * 119.06047 * 179.97438 * 21 20 18 23 23 C 1.38626 * 118.48983 * 0.02562 * 22 21 20 24 24 C 1.38562 * 119.34964 * 0.27632 * 23 22 21 25 25 N 1.31532 * 120.90179 * 359.42361 * 24 23 22 26 26 H 1.09005 * 109.47065 * 265.23833 * 1 2 3 27 27 H 1.08999 * 109.47195 * 25.23530 * 1 2 3 28 28 H 1.08992 * 109.47011 * 145.23849 * 1 2 3 29 29 H 0.97006 * 119.99945 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.47328 * 329.99760 * 11 2 1 31 31 H 1.09010 * 109.47181 * 210.00014 * 11 2 1 32 32 H 0.96701 * 114.00512 * 299.99919 * 14 12 11 33 33 H 1.08996 * 109.47052 * 65.00081 * 15 12 11 34 34 H 1.09003 * 109.47013 * 304.99563 * 15 12 11 35 35 H 1.09005 * 109.47251 * 263.71021 * 17 16 15 36 36 H 1.09001 * 109.46620 * 23.70470 * 17 16 15 37 37 H 1.08997 * 109.47416 * 143.70695 * 17 16 15 38 38 H 1.08006 * 120.47211 * 359.95647 * 21 20 18 39 39 H 1.07999 * 120.75473 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.32884 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.54771 * 179.70166 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1010 1.2603 -0.5058 5 6 1.6211 2.2926 0.6502 6 7 0.5237 2.1726 1.3672 7 14 2.4669 3.9520 0.5077 8 1 1.9201 4.6877 -0.6607 9 1 2.2263 4.7381 1.7444 10 1 3.9268 3.7494 0.3260 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 3.0416 -0.9498 -1.9567 14 8 1.2039 -1.8803 -2.1169 15 6 3.2170 -3.0351 -1.4438 16 7 3.5655 -3.3972 -2.8199 17 6 2.6449 -4.2097 -3.6190 18 6 4.7330 -2.9828 -3.3507 19 8 5.5156 -2.3453 -2.6744 20 6 5.0620 -3.3047 -4.7591 21 6 6.1914 -2.7428 -5.3503 22 6 6.4865 -3.0537 -6.6683 23 6 5.6412 -3.9156 -7.3496 24 6 4.5316 -4.4327 -6.7005 25 7 4.2781 -4.1254 -5.4470 26 1 -0.3633 -0.0853 1.0242 27 1 -0.3633 0.9296 -0.4381 28 1 -0.3633 -0.8442 -0.5859 29 1 0.1541 2.9461 1.8212 30 1 1.6085 -2.0286 0.5130 31 1 3.1500 -1.1385 0.5134 32 1 0.6268 -2.5433 -1.7137 33 1 2.5917 -3.8153 -1.0100 34 1 4.1277 -2.9294 -0.8542 35 1 2.9439 -5.2566 -3.5651 36 1 1.6326 -4.1005 -3.2299 37 1 2.6733 -3.8767 -4.6565 38 1 6.8278 -2.0742 -4.7896 39 1 7.3553 -2.6339 -7.1534 40 1 5.8428 -4.1777 -8.3777 41 1 3.8682 -5.1007 -7.2298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486320958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:13 Heat of formation + Delta-G solvation = -1.963758 kcal Electronic energy + Delta-G solvation = -23647.093490 eV Core-core repulsion = 20143.000553 eV Total energy + Delta-G solvation = -3504.092937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.87504 -39.14178 -37.34394 -35.33371 -34.44753 -32.85621 -31.73859 -31.26167 -29.63476 -26.72920 -26.18126 -25.58279 -24.00336 -23.68640 -22.00279 -20.53932 -19.98562 -17.53376 -17.14398 -16.66734 -16.31345 -15.97550 -15.63865 -15.22345 -15.01691 -14.73273 -14.56533 -14.06874 -13.69086 -13.57339 -13.34361 -13.04904 -12.84012 -12.70741 -12.36524 -12.01842 -11.76900 -11.36819 -11.08514 -10.83566 -10.61769 -10.48904 -10.32231 -10.28769 -10.15115 -10.02105 -9.86428 -9.70983 -9.46643 -9.25911 -8.50385 -8.28256 -6.46536 -5.67040 -3.20382 0.44048 0.92132 2.69773 2.99859 3.43614 3.49133 3.52008 3.67243 3.91810 4.46886 4.51101 4.55894 4.69615 4.79305 4.94063 5.07157 5.22180 5.37606 5.43100 5.49681 5.50434 5.68116 5.74360 5.81113 5.92328 5.98982 6.03753 6.09706 6.13674 6.38311 6.64578 6.72863 6.85186 6.97500 7.35926 7.47023 7.51498 7.76833 7.90039 8.18134 8.25581 8.55479 9.33723 9.93589 10.47926 11.38321 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.003670 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.313161 B = 7627.398925 C = 8373.087000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.589 5.589 3 C -0.257 4.257 4 H 0.062 0.938 5 C 0.008 3.992 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.095 0.905 14 O -0.549 6.549 15 C 0.081 3.919 16 N -0.584 5.584 17 C 0.082 3.918 18 C 0.561 3.439 19 O -0.533 6.533 20 C 0.086 3.914 21 C -0.112 4.112 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.089 3.911 25 N -0.450 5.450 26 H 0.014 0.986 27 H 0.046 0.954 28 H 0.000 1.000 29 H 0.252 0.748 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.358 0.642 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -16.978 -16.035 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.311 5.311 3 C -0.387 4.387 4 H 0.079 0.921 5 C -0.190 4.190 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.203 1.203 11 C -0.003 4.003 12 C 0.009 3.991 13 H 0.113 0.887 14 O -0.352 6.352 15 C -0.043 4.043 16 N -0.314 5.314 17 C -0.060 4.060 18 C 0.348 3.652 19 O -0.410 6.410 20 C -0.052 4.052 21 C -0.133 4.133 22 C -0.108 4.108 23 C -0.175 4.175 24 C -0.070 4.070 25 N -0.162 5.162 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.203 0.797 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.119 -16.375 -15.474 23.628 hybrid contribution 0.865 0.843 -0.205 1.225 sum 7.983 -15.532 -15.679 23.470 Atomic orbital electron populations 1.20714 0.82827 0.97285 0.96924 1.43591 1.01628 1.00136 1.85766 1.19135 1.04287 0.88005 1.27282 0.92052 1.25237 0.97926 0.99096 0.96782 1.70026 1.21986 1.29116 1.33841 0.86275 0.79395 0.84043 0.76966 1.21440 1.21648 1.20310 1.21301 0.97074 0.89579 0.92331 1.23269 0.84185 0.94203 0.97490 0.88663 1.86644 1.29135 1.63189 1.56260 1.22444 1.01556 0.98384 0.81873 1.47631 1.18324 1.51149 1.14316 1.22315 0.92003 0.93789 0.97927 1.17929 0.81996 0.79943 0.85370 1.90806 1.49199 1.40203 1.60784 1.21259 0.93080 0.95932 0.94922 1.22168 0.96712 0.98970 0.95431 1.21647 0.99272 0.95973 0.93874 1.22361 0.95943 0.97678 1.01489 1.22966 0.95665 0.97533 0.90793 1.68151 1.27485 1.12301 1.08261 0.96749 0.93505 0.98189 0.93771 0.94441 0.92510 0.79715 0.90355 0.89029 0.93261 0.91825 0.87889 0.83366 0.84105 0.84382 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.26 8.78 59.85 0.53 4.79 16 2 N -0.59 -15.45 2.81 -181.12 -0.51 -15.96 16 3 C -0.26 -7.46 9.56 -15.06 -0.14 -7.60 16 4 H 0.06 1.79 7.84 -52.49 -0.41 1.37 16 5 C 0.01 0.25 5.16 -17.43 -0.09 0.16 16 6 N -0.91 -27.35 11.04 55.49 0.61 -26.74 16 7 Si 0.90 22.79 29.56 -169.99 -5.02 17.77 16 8 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.13 2.64 5.38 -4.05 -0.02 2.62 16 12 C 0.07 1.32 3.48 -26.73 -0.09 1.23 16 13 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 14 O -0.55 -9.87 10.93 -35.23 -0.39 -10.26 16 15 C 0.08 1.21 5.05 -4.04 -0.02 1.19 16 16 N -0.58 -8.59 2.84 -182.57 -0.52 -9.11 16 17 C 0.08 0.97 9.07 59.85 0.54 1.51 16 18 C 0.56 9.08 7.66 -12.18 -0.09 8.99 16 19 O -0.53 -10.21 15.91 5.35 0.09 -10.12 16 20 C 0.09 1.14 6.62 -83.01 -0.55 0.59 16 21 C -0.11 -1.26 9.63 -39.05 -0.38 -1.64 16 22 C -0.08 -0.65 10.17 -39.31 -0.40 -1.05 16 23 C -0.15 -1.05 10.11 -39.32 -0.40 -1.45 16 24 C 0.09 0.72 11.18 -17.56 -0.20 0.52 16 25 N -0.45 -5.06 6.04 -9.80 -0.06 -5.12 16 26 H 0.01 0.38 7.74 -51.93 -0.40 -0.02 16 27 H 0.05 1.31 7.18 -51.93 -0.37 0.93 16 28 H 0.00 -0.01 6.81 -51.93 -0.35 -0.36 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.06 1.22 8.04 -51.92 -0.42 0.80 16 32 H 0.36 5.05 8.81 45.56 0.40 5.46 16 33 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.09 1.46 7.39 -51.93 -0.38 1.07 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.70 7.25 -51.93 -0.38 0.32 16 37 H 0.10 1.26 5.26 -52.08 -0.27 0.99 16 38 H 0.15 1.68 7.66 -52.48 -0.40 1.28 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -35.45 341.20 -7.05 -42.50 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.08 Total: 2.04 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -1.31 Total: 9.85 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.47 Total: -56.92 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.30 Total: -20.38 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.45 -7.05 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486320958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.539 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds