Wall clock time and date at job start Tue Mar 31 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36946 * 119.99921 * 2 1 4 4 H 1.07999 * 119.99804 * 212.73935 * 3 2 1 5 5 C 1.38805 * 119.99982 * 32.74190 * 3 2 1 6 6 N 1.31627 * 120.00014 * 6.12001 * 5 3 2 7 7 Si 1.86796 * 120.00177 * 186.11806 * 5 3 2 8 8 H 1.48502 * 109.47423 * 89.99847 * 7 5 3 9 9 H 1.48501 * 109.47523 * 210.00026 * 7 5 3 10 10 H 1.48506 * 109.46937 * 330.00026 * 7 5 3 11 11 C 1.46495 * 120.00107 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47260 * 90.00221 * 11 2 1 13 13 H 1.08999 * 109.47487 * 60.00042 * 12 11 2 14 14 O 1.42900 * 109.46875 * 299.99617 * 12 11 2 15 15 C 1.53005 * 109.47193 * 180.02562 * 12 11 2 16 16 N 1.46503 * 109.46880 * 184.99690 * 15 12 11 17 17 C 1.46499 * 120.00273 * 269.99755 * 16 15 12 18 18 C 1.34779 * 119.99824 * 90.00124 * 16 15 12 19 19 O 1.21513 * 120.00160 * 2.35516 * 18 16 15 20 20 C 1.48167 * 119.99683 * 182.35868 * 18 16 15 21 21 C 1.39308 * 119.72241 * 172.40768 * 20 18 16 22 22 C 1.38593 * 119.06047 * 179.97438 * 21 20 18 23 23 C 1.38626 * 118.48983 * 0.02562 * 22 21 20 24 24 C 1.38562 * 119.34964 * 0.27632 * 23 22 21 25 25 N 1.31532 * 120.90179 * 359.42361 * 24 23 22 26 26 H 1.09005 * 109.47065 * 265.23833 * 1 2 3 27 27 H 1.08999 * 109.47195 * 25.23530 * 1 2 3 28 28 H 1.08992 * 109.47011 * 145.23849 * 1 2 3 29 29 H 0.97006 * 119.99945 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.47328 * 329.99760 * 11 2 1 31 31 H 1.09010 * 109.47181 * 210.00014 * 11 2 1 32 32 H 0.96701 * 114.00512 * 299.99919 * 14 12 11 33 33 H 1.08996 * 109.47052 * 65.00081 * 15 12 11 34 34 H 1.09003 * 109.47013 * 304.99563 * 15 12 11 35 35 H 1.09005 * 109.47251 * 263.71021 * 17 16 15 36 36 H 1.09001 * 109.46620 * 23.70470 * 17 16 15 37 37 H 1.08997 * 109.47416 * 143.70695 * 17 16 15 38 38 H 1.08006 * 120.47211 * 359.95647 * 21 20 18 39 39 H 1.07999 * 120.75473 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.32884 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.54771 * 179.70166 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1010 1.2603 -0.5058 5 6 1.6211 2.2926 0.6502 6 7 0.5237 2.1726 1.3672 7 14 2.4669 3.9520 0.5077 8 1 1.9201 4.6877 -0.6607 9 1 2.2263 4.7381 1.7444 10 1 3.9268 3.7494 0.3260 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 3.0416 -0.9498 -1.9567 14 8 1.2039 -1.8803 -2.1169 15 6 3.2170 -3.0351 -1.4438 16 7 3.5655 -3.3972 -2.8199 17 6 2.6449 -4.2097 -3.6190 18 6 4.7330 -2.9828 -3.3507 19 8 5.5156 -2.3453 -2.6744 20 6 5.0620 -3.3047 -4.7591 21 6 6.1914 -2.7428 -5.3503 22 6 6.4865 -3.0537 -6.6683 23 6 5.6412 -3.9156 -7.3496 24 6 4.5316 -4.4327 -6.7005 25 7 4.2781 -4.1254 -5.4470 26 1 -0.3633 -0.0853 1.0242 27 1 -0.3633 0.9296 -0.4381 28 1 -0.3633 -0.8442 -0.5859 29 1 0.1541 2.9461 1.8212 30 1 1.6085 -2.0286 0.5130 31 1 3.1500 -1.1385 0.5134 32 1 0.6268 -2.5433 -1.7137 33 1 2.5917 -3.8153 -1.0100 34 1 4.1277 -2.9294 -0.8542 35 1 2.9439 -5.2566 -3.5651 36 1 1.6326 -4.1005 -3.2299 37 1 2.6733 -3.8767 -4.6565 38 1 6.8278 -2.0742 -4.7896 39 1 7.3553 -2.6339 -7.1534 40 1 5.8428 -4.1777 -8.3777 41 1 3.8682 -5.1007 -7.2298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486320958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:12 Heat of formation + Delta-G solvation = -27.797107 kcal Electronic energy + Delta-G solvation = -23648.213708 eV Core-core repulsion = 20143.000553 eV Total energy + Delta-G solvation = -3505.213156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.78181 -40.19422 -38.85970 -36.88874 -36.04138 -33.62776 -33.31856 -32.50335 -31.13047 -28.08500 -27.74622 -27.33387 -25.07278 -24.45236 -23.52635 -22.33611 -21.05329 -18.88160 -18.44071 -18.02100 -17.41504 -17.11696 -16.80171 -16.62757 -16.43482 -16.27765 -15.63552 -15.44516 -15.20995 -14.75708 -14.47366 -14.42968 -14.32290 -13.89255 -13.61550 -13.18186 -13.07205 -12.87094 -12.81556 -12.58114 -12.48608 -12.26825 -12.11224 -12.03270 -11.82948 -11.40894 -11.29323 -10.92486 -10.64745 -10.23573 -10.12649 -9.57330 -8.56547 -7.87304 -5.44234 -0.35397 0.25856 1.41158 1.42076 1.52005 1.66801 1.93882 2.46651 2.85430 3.07033 3.25739 3.52505 3.66168 3.75652 3.97728 4.05517 4.06447 4.10011 4.16389 4.40940 4.45331 4.50251 4.57164 4.71730 4.77196 4.91676 4.95031 5.00101 5.05817 5.17376 5.19264 5.27745 5.36725 5.53808 5.59285 5.66392 5.73010 6.28213 6.36060 6.71190 6.98767 7.05868 7.15194 7.85036 8.31362 9.14648 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.003670 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.313161 B = 7627.398925 C = 8373.087000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.609 5.609 3 C -0.272 4.272 4 H 0.050 0.950 5 C -0.043 4.043 6 N -0.932 5.932 7 Si 0.966 3.034 8 H -0.284 1.284 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.124 3.876 12 C 0.095 3.905 13 H 0.047 0.953 14 O -0.559 6.559 15 C 0.090 3.910 16 N -0.585 5.585 17 C 0.084 3.916 18 C 0.549 3.451 19 O -0.581 6.581 20 C 0.052 3.948 21 C -0.130 4.130 22 C -0.080 4.080 23 C -0.135 4.135 24 C 0.084 3.916 25 N -0.462 5.462 26 H -0.005 1.005 27 H 0.012 0.988 28 H 0.038 0.962 29 H 0.251 0.749 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.379 0.621 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -18.998 -18.529 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.332 5.332 3 C -0.402 4.402 4 H 0.068 0.932 5 C -0.239 4.239 6 N -0.577 5.577 7 Si 0.793 3.207 8 H -0.211 1.211 9 H -0.211 1.211 10 H -0.198 1.198 11 C -0.003 4.003 12 C 0.032 3.968 13 H 0.065 0.935 14 O -0.366 6.366 15 C -0.034 4.034 16 N -0.314 5.314 17 C -0.057 4.057 18 C 0.337 3.663 19 O -0.462 6.462 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.154 4.154 24 C -0.075 4.075 25 N -0.174 5.174 26 H 0.014 0.986 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.227 0.773 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.151 0.849 39 H 0.189 0.811 40 H 0.199 0.801 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.118 -18.449 -17.980 26.727 hybrid contribution 0.853 1.353 0.410 1.651 sum 7.971 -17.096 -17.570 25.779 Atomic orbital electron populations 1.20483 0.82664 0.97008 0.96057 1.43818 1.02057 1.01111 1.86206 1.19326 1.04120 0.89741 1.27036 0.93227 1.25953 0.98712 1.02403 0.96786 1.70162 1.23090 1.29839 1.34656 0.85302 0.78528 0.79872 0.76949 1.21102 1.21128 1.19794 1.21476 0.96449 0.88286 0.94098 1.22682 0.84518 0.94911 0.94723 0.93518 1.86599 1.29201 1.64331 1.56442 1.22261 1.01029 0.97452 0.82634 1.47766 1.18424 1.50949 1.14307 1.22442 0.91793 0.94044 0.97455 1.18572 0.81890 0.79171 0.86682 1.90756 1.50706 1.42397 1.62303 1.20905 0.94929 0.98632 0.93903 1.22229 0.96363 0.99371 0.97159 1.22029 1.00380 0.95801 0.92338 1.22861 0.94243 0.95319 1.02991 1.23681 0.96602 0.97434 0.89749 1.68049 1.27402 1.12190 1.09798 0.98627 0.96873 0.94403 0.93994 0.91288 0.93761 0.77296 0.86378 0.90440 0.91676 0.90720 0.88119 0.84935 0.81113 0.80136 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.36 8.78 127.77 1.12 10.48 16 2 N -0.61 -32.41 2.81 -726.95 -2.05 -34.46 16 3 C -0.27 -16.20 9.56 84.03 0.80 -15.39 16 4 H 0.05 3.01 7.84 -2.91 -0.02 2.99 16 5 C -0.04 -2.53 5.16 84.86 0.44 -2.09 16 6 N -0.93 -57.39 11.04 21.65 0.24 -57.15 16 7 Si 0.97 47.80 29.56 68.60 2.03 49.83 16 8 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 11 C 0.12 5.21 5.38 86.38 0.47 5.68 16 12 C 0.09 3.53 3.48 30.59 0.11 3.64 16 13 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 14 O -0.56 -19.37 10.93 -148.98 -1.63 -21.00 16 15 C 0.09 2.65 5.05 86.38 0.44 3.08 16 16 N -0.59 -17.15 2.84 -849.81 -2.41 -19.56 16 17 C 0.08 1.84 9.07 127.77 1.16 3.00 16 18 C 0.55 18.55 7.66 86.88 0.67 19.21 16 19 O -0.58 -23.95 15.91 -3.76 -0.06 -24.01 16 20 C 0.05 1.41 6.62 41.91 0.28 1.69 16 21 C -0.13 -2.97 9.63 22.61 0.22 -2.76 16 22 C -0.08 -1.09 10.17 22.45 0.23 -0.86 16 23 C -0.13 -1.28 10.11 22.44 0.23 -1.05 16 24 C 0.08 1.07 11.18 84.82 0.95 2.02 16 25 N -0.46 -9.68 6.04 -184.91 -1.12 -10.80 16 26 H 0.00 -0.25 7.74 -2.38 -0.02 -0.27 16 27 H 0.01 0.72 7.18 -2.39 -0.02 0.70 16 28 H 0.04 1.61 6.81 -2.39 -0.02 1.60 16 29 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 30 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 31 H 0.04 1.95 8.04 -2.38 -0.02 1.93 16 32 H 0.38 9.55 8.81 -74.06 -0.65 8.89 16 33 H 0.12 2.53 8.07 -2.39 -0.02 2.51 16 34 H 0.08 2.53 7.39 -2.39 -0.02 2.51 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.44 7.25 -2.39 -0.02 1.43 16 37 H 0.10 2.31 5.26 -2.68 -0.01 2.30 16 38 H 0.13 3.30 7.66 -2.91 -0.02 3.28 16 39 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 41 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -81.52 341.20 2.48 -79.04 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.38 Total: 11.46 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 7.09 Total: 26.65 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -5.33 Total: -121.96 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.69 Total: -45.01 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -81.52 2.48 -79.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486320958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.239 kcal (2) G-P(sol) polarization free energy of solvation -81.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds