Wall clock time and date at job start Tue Mar 31 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47017 * 269.99564 * 3 2 1 5 5 H 1.48492 * 109.47131 * 30.00139 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99892 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 N 1.46502 * 109.47073 * 179.97438 * 18 17 15 20 20 C 1.34431 * 126.81866 * 125.00110 * 19 18 17 21 21 N 1.30832 * 108.07286 * 179.97438 * 20 19 18 22 22 C 1.33236 * 109.83132 * 359.97438 * 21 20 19 23 23 N 1.30713 * 108.94996 * 359.75637 * 22 21 20 24 24 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 25 25 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 27 27 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 28 28 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 29 29 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 30 30 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 31 31 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 32 32 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 33 33 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 34 34 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 35 35 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 36 36 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 37 37 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 38 38 H 1.07997 * 125.96521 * 359.97438 * 20 19 18 39 39 H 1.08003 * 125.52582 * 180.02562 * 22 21 20 40 40 H 1.08999 * 113.61567 * 334.48111 * 24 10 9 41 41 H 1.08998 * 113.61196 * 105.38466 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 7 1.3501 -11.1560 5.4466 20 6 1.0393 -11.3293 6.7430 21 7 1.9084 -12.1586 7.2614 22 6 2.7848 -12.5348 6.3311 23 7 2.4812 -11.9516 5.2013 24 6 1.2469 -4.8365 -0.5606 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 3.0560 -3.5693 -0.4293 28 1 2.9742 -4.3216 1.9018 29 1 1.1688 -4.1300 1.9705 30 1 2.8060 -6.1607 0.2828 31 1 0.0882 -6.1151 1.7060 32 1 0.4334 -7.2968 0.4205 33 1 2.5317 -7.3971 2.3080 34 1 2.4196 -9.8859 3.3348 35 1 2.0731 -8.7043 4.6201 36 1 -0.1422 -9.7545 4.9895 37 1 0.2038 -10.9365 3.7044 38 1 0.2159 -10.8651 7.2654 39 1 3.6096 -13.2150 6.4843 40 1 0.1684 -4.7076 -0.4690 41 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489377883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:34 Heat of formation + Delta-G solvation = 80.295220 kcal Electronic energy + Delta-G solvation = -21953.808178 eV Core-core repulsion = 18485.575008 eV Total energy + Delta-G solvation = -3468.233169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41757 -40.06633 -38.56391 -35.33831 -34.77055 -33.35124 -31.59096 -31.17767 -30.21706 -27.60053 -25.20362 -25.09187 -23.79196 -22.36673 -21.96140 -21.12999 -20.56290 -19.12072 -18.05936 -17.11710 -16.87134 -16.39266 -16.28282 -15.65686 -15.20421 -14.98039 -14.78376 -14.51210 -14.15339 -13.88369 -13.57997 -13.25811 -12.99711 -12.95610 -12.46338 -11.97095 -11.88065 -11.73362 -11.44154 -11.28702 -10.88064 -10.59766 -10.45907 -10.36191 -10.22463 -10.17853 -10.13637 -9.94007 -9.87415 -9.54403 -9.17563 -8.91013 -7.00523 -5.82055 -3.11169 1.24027 1.84909 2.35615 2.60157 2.99628 3.39881 3.45087 3.46863 3.95520 4.00902 4.24187 4.41282 4.54683 4.62217 4.73109 4.85727 4.88772 4.95582 5.15908 5.19702 5.29487 5.41823 5.43363 5.74071 5.76203 5.83828 5.86515 6.04114 6.04201 6.15081 6.24187 6.29161 6.35556 6.37826 6.53024 6.76169 7.05498 7.26364 7.65398 7.69510 7.95103 8.36463 9.47538 10.05472 10.39560 11.40236 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032227 B = 0.002065 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.640056 B =13555.945930 C =13818.652349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.161 4.161 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.721 5.721 15 C 0.516 3.484 16 O -0.545 6.545 17 C -0.153 4.153 18 C 0.146 3.854 19 N -0.379 5.379 20 C 0.257 3.743 21 N -0.550 5.550 22 C 0.197 3.803 23 N -0.320 5.320 24 C -0.142 4.142 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.402 0.598 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.081 0.919 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -23.063 9.606 25.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 C -0.202 4.202 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.371 5.371 15 C 0.301 3.699 16 O -0.423 6.423 17 C -0.194 4.194 18 C 0.023 3.977 19 N -0.170 5.170 20 C -0.040 4.040 21 N -0.277 5.277 22 C -0.106 4.106 23 N -0.148 5.148 24 C -0.181 4.181 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.099 0.901 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.678 -23.120 9.059 25.102 hybrid contribution 0.457 1.146 0.132 1.241 sum 4.135 -21.974 9.192 24.175 Atomic orbital electron populations 1.69659 1.05136 1.25786 1.57394 1.24781 0.95542 0.97828 1.02803 0.86183 0.78651 0.83768 0.77536 1.21671 1.21747 1.20743 1.19295 0.91066 0.84232 1.43006 0.91099 1.42411 1.05758 0.99879 1.87051 1.21516 0.95253 0.85082 0.92805 1.24001 1.01279 0.94765 1.00162 1.22697 0.98447 0.94458 0.99125 1.21486 0.95066 0.91828 0.90814 1.46043 1.13021 1.35861 1.42222 1.20250 0.87494 0.80674 0.81477 1.90742 1.15118 1.69782 1.66658 1.21870 0.99989 0.98159 0.99404 1.21561 0.92918 0.91322 0.91849 1.50637 1.22357 1.34365 1.09664 1.26149 0.99194 0.95667 0.82984 1.70563 1.06866 1.16870 1.33377 1.26036 0.99234 0.99352 0.85943 1.78034 1.01941 1.10838 1.24007 1.23427 1.00922 0.97039 0.96743 0.93425 0.78065 0.90749 0.92772 0.90339 0.89346 0.91042 0.91607 0.76374 0.87386 0.88180 0.86957 0.88237 0.76382 0.76694 0.90067 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.43 5.41 -52.64 -0.28 -17.72 16 10 C 0.17 3.09 4.47 -67.12 -0.30 2.79 16 11 C -0.16 -2.52 7.45 -25.77 -0.19 -2.71 16 12 C -0.13 -1.58 3.76 -89.67 -0.34 -1.92 16 13 C 0.13 1.55 5.51 -4.04 -0.02 1.53 16 14 N -0.72 -6.90 5.56 -60.29 -0.33 -7.23 16 15 C 0.52 5.17 7.83 -10.99 -0.09 5.08 16 16 O -0.54 -7.45 15.98 5.56 0.09 -7.36 16 17 C -0.15 -1.05 5.92 -27.88 -0.16 -1.22 16 18 C 0.15 0.98 5.84 -4.04 -0.02 0.96 16 19 N -0.38 -3.00 3.69 -62.63 -0.23 -3.23 16 20 C 0.26 1.82 12.63 -90.65 -1.14 0.68 16 21 N -0.55 -5.09 11.19 -15.83 -0.18 -5.27 16 22 C 0.20 1.67 13.03 -91.82 -1.20 0.48 16 23 N -0.32 -3.06 12.58 29.29 0.37 -2.69 16 24 C -0.14 -2.14 7.39 -25.92 -0.19 -2.34 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 10.05 7.91 -40.82 -0.32 9.72 16 27 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 2.92 8.47 -40.82 -0.35 2.57 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.22 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -34.54 353.18 -9.55 -44.09 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.09 Total: 8.13 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.90 Total: -3.97 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: 0.07 Total: -63.26 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.54 -9.55 -44.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489377883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.382 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds